ViewGene

Locus Name:
GeneID:
Location:

GeneID:6282
TrivialName: PA14_22880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22880
PAO1 Ortholog Locus:
Sequence Length:213
Protein Length:70
Start: 1985296
Stop: 1985508
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO55334.1| (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 29/57 (50%), Positives = 45/57 (78%)
Sequence:
TTGCGGTCCGCGCCGAAAAAGGGGGAACGCTTGAAAAGTCCTTGCATCAATATCTGTGAGTTCGATGCCGAC
GTGTGCCGCGGCTGCGGGCGTACGCGCCAGGAAATCCGTGCCTGGAAGCGCGCGGACAAGGCCGAGCAGCGA
CTGATCCTCGCCGAGGCCGACCTGCGCCTGCTGGCGTTGCAGGCGCGCGGTCGGCGCAAGTTCCGCTGA
Translation:
MRSAPKKGERLKSPCINICEFDADVCRGCGRTRQEIRAWKRADKAEQRLILAEADLRLLALQARGRRKFR*
AnnotationID:6283GeneID:6282
AnnotatorUID: diggins
Modification Date/Time: 2005-09-18 18:06:50
Gene Name:
Confidence Code:3
GeneProduct:putative Fe-S protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3313
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3313, Predicted Fe-S protein
CD-Length = 74 residues,  75.7% aligned
Score = 45.0 bits (106), Expect = 2e-06
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Genomic Context:
Comment:
ReferenceID:16082
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29678
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32346
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6282_cdd.html
URL:
GC ORFID: 49284How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2968635Stop: 2968423
Length: 213
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCGGTCCGCGCCGAAAAAGGGGGAACGCTTGAAAAGTCCTTGCATCAATATCTGTGAGTTCGATGCCGAC
GTGTGCCGCGGCTGCGGGCGTACGCGCCAGGAAATCCGTGCCTGGAAGCGCGCGGACAAGGCCGAGCAGCGA
CTGATCCTCGCCGAGGCCGACCTGCGCCTGCTGGCGTTGCAGGCGCGCGGTCGGCGCAAGTTCCGCTGA