ViewGene

Locus Name:
GeneID:
Location:

GeneID:628
TrivialName: PA14_72800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72800
PAO1 Ortholog Locus:PA5518
Sequence Length:1704
Protein Length:567
Start: 6485007
Stop: 6483304
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08903.1|AE004964_6 (AE004964) probable potassium efflux transporter [Pseudomonas aeruginosa PAO1]
Identities = 566/567 (99%), Positives = 566/567 (99%)
Sequence:
ATGCACCATACGCCGTTACTCACCACACTCGCCGCGGGGTTCGTCCTCGCCTTCCTCTTCGGGGCCCTGGCC
AATCGCCTGCGCATTTCGCCGCTGGTCGGCTACTTGCTCGCAGGTGTTCTGGCCGGGCCGTTCACTCCCGGT
TATGTCGCCGACCAGGCGCTGTCGCAGGAAATCGCCGAACTCGGCGTGATCCTGCTGATGTTCGGCGTCGGC
CTGCACTTCTCGCTCAAGGACCTGCTCTCGGTGAAGGCCATCGCCATTCCCGGGGCGCTGGTGCAGATCGGC
GTCGCCACGCTGCTTGGCATCGGCCTGGCCAAGCTGCTCGGCTGGAGCTTCGGCGGCGGCCTGGTATTCGGC
CTGAGCCTGTCGGTGGCCAGTACCGTGGTGCTGTTGCGCGCCCTGGAGCAGCGCCAGTTGCTGGACACCAAG
CGTGGCAGGATCGCCATCGGCTGGCTGATCGTCGAGGACCTGGCGATGGTCCTGACCCTGGTACTCCTGCCG
GCGCTCGCCGGCACCCTCGGCGGCAAGACCGACGGCGGCGACGCCGGTCTGCTCTGGCCGCTGCTGATTACC
CTGGGCAAGGTCGCCGCCTTCGTCGCCCTGATGATCTTCGGCGGTCGCCGGGTGGTGCCCTGGGTGCTGGAG
AGGATCGCCGCCAGCGGTTCGCGGGAACTCTTCACCCTGGCCGTGCTGGCCATCGCCCTGGGCATCGCCTAT
GGCTCGGCGGTGCTGTTCGGGGTGTCCTTCGCGCTAGGCGCCTTCTTCGCCGGGATGATCCTCAACGAGTCC
GAACTCAGCCACGAGGCGGCGGAGAACTCGTTGCCGCTGCGCGACGCTTTCGCGGTGCTGTTCTTCGTCTCG
GTGGGGATGCTGTTCAATCCGATGATCCTGTTGCAGGAGCCGCTGACGGTCCTGGCCACCTTCCTGGTCATC
GTCTTCGGCAAGTCGGTGGCCGCCTACCTGATCGTCCGCGCCTTCGGCCATCCGAACAGCACCGCACTGGTG
ATCGCCGCCAGCCTGGCGCAGATCGGCGAGTTTTCCTTCATTCTCATCGGCCTGGGCATTGGCCTCGAACTG
GTGCCGGAGCAGAGCCGCGACCTGGTGCTGGCCGGGGCGATCCTGTCGATCCTGGTCAATCCGCTGCTGTTC
ATCGCCATCGATCGCCTGCAGCAACGCAAGGAGCAGCGCCTGGCGGAGGCCGCTGGCGGGGTTCGCGAGATG
CCGGCGCAGGACCTGCCGCCGCCGATCCTGGAGCGCGAGCATGCGGTGCTGATCGGTCATGGCCGGGTTGGC
GGGTTGGTCAGCGCTCGCCTGCGCGCCGCCGGGACGCCCTTCGTGGTGGTGGTGGACAAGCGTGACAAGGCC
GACGAACTGCGCGAACAGGGCTACAGCGTGGTCCTCGGCAACGCCGCCAGTCCCGGCGTGCTGGAACTGGCC
AACATCGCCGAGGCGCGCTGGTTGCTGATCGCCATTCCCAACGGCTTCGAGGCCGGGCAGATCGCCAGCCAC
GCCCGCGCGGTGAACCCGCCGCTGGACATCGTCGCCCGGGCGCATTTCGACGCCGAGGTGGACTACCTGGAG
CAGAACGGCGCCAACCTGGTGATCATGGGCGAGCGCGAGATCGCCTGCGGCATGGTCCATCGCCTGGGACTC
GACCGTGACGAGCGCGGCGCCGACGCACCGCTGCCGCAGTCGGCCTGA
Translation:
MHHTPLLTTLAAGFVLAFLFGALANRLRISPLVGYLLAGVLAGPFTPGYVADQALSQEIAELGVILLMFGVG
LHFSLKDLLSVKAIAIPGALVQIGVATLLGIGLAKLLGWSFGGGLVFGLSLSVASTVVLLRALEQRQLLDTK
RGRIAIGWLIVEDLAMVLTLVLLPALAGTLGGKTDGGDAGLLWPLLITLGKVAAFVALMIFGGRRVVPWVLE
RIAASGSRELFTLAVLAIALGIAYGSAVLFGVSFALGAFFAGMILNESELSHEAAENSLPLRDAFAVLFFVS
VGMLFNPMILLQEPLTVLATFLVIVFGKSVAAYLIVRAFGHPNSTALVIAASLAQIGEFSFILIGLGIGLEL
VPEQSRDLVLAGAILSILVNPLLFIAIDRLQQRKEQRLAEAAGGVREMPAQDLPPPILEREHAVLIGHGRVG
GLVSARLRAAGTPFVVVVDKRDKADELREQGYSVVLGNAASPGVLELANIAEARWLLIAIPNGFEAGQIASH
ARAVNPPLDIVARAHFDAEVDYLEQNGANLVIMGEREIACGMVHRLGLDRDERGADAPLPQSA*
AnnotationID:637GeneID:628
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:27
Gene Name:
Confidence Code:3
GeneProduct:putative potassium efflux protein
Cell Localization:()
Synonyms:rosB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4651,COG0475
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL19446.1| (AE008718) putative CPA2 family transport protein [Salmonella
           typhimurium LT2]
          Length = 558

 Score =  667 bits (1722), Expect = 0.0
 Identities = 350/555 (63%), Positives = 439/555 (79%), Gaps = 13/555 (2%)

>gb|AAG54827.1|AE005227_1 (AE005227) putative transport protein [Escherichia coli O157:H7
           EDL933]
          Length = 558

 Score =  665 bits (1715), Expect = 0.0
 Identities = 348/555 (62%), Positives = 441/555 (79%), Gaps = 13/555 (2%)

>gb|AAP15955.1| (AE016979) putative transport protein [Shigella flexneri 2a str.
           2457T]
          Length = 558

 Score =  664 bits (1712), Expect = 0.0
 Identities = 348/555 (62%), Positives = 440/555 (79%), Gaps = 13/555 (2%)

Structural Features:
COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component 
[Inorganic ion transport and metabolism]
CD-Length = 408 residues, 100.0% aligned
Score =  536 bits (1381), Expect = 3e-153
Identities = 316/409 (77%), Positives = 358/409 (87%), Gaps = 2/409 (0%)

COG0475, KefB, Kef-type K+ transport systems, membrane components 
[Inorganic ion transport and metabolism]
CD-Length = 397 residues,  99.0% aligned
Score =  184 bits (468), Expect = 3e-47
Identities = 141/406 (34%), Positives = 227/406 (55%), Gaps = 18/406 (4%)
Genomic Context:
Comment:
ReferenceID:1259
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18401
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33307
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:628_cdd.html
URL:
Homologs By Global Alignment
Gene ID:628

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1065 PA5518_tr translation of PA5518 567 99.82 99.82 0 2786.0
40914 gb|AAG08903.1|AE004964_6 (AE004964) probable potassium efflux transporter [Pseudomonas aeruginosa PAO1] 567 99.82 99.82 0 2786.0
40915 emb|CAE29284.1| (BX572605) putative potassium efflux transporter [Rhodopseudomonas palustris CGA009] 586 61.60 75.76 28 1759.0
40927 emb|CAC92334.1| (AJ414155) putative potassium antiporter [Yersinia pestis CO92] 575 61.21 75.65 20 1712.0
40926 gb|AAM84665.1|AE013712_2 (AE013712) putative potassium efflux protein [Yersinia pestis KIM] 575 61.21 75.65 20 1712.0
GC ORFID: 43630How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5518Glimmer Score:
Start: 5748696Stop: 5746993
Length: 1704
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5518 translation of PA5518Homolog Bit Score 1077.0
Other Homologs: t_PA5518 (ORF: GLIMMER)
GC ORF Sequence
ATGCACCATACGCCGTTACTCACCACACTCGCCGCGGGGTTCGTCCTCGCCTTCCTCTTCGGGGCCCTGGCC
AATCGCCTGCGCATTTCGCCGCTGGTCGGCTACTTGCTCGCAGGTGTTCTGGCCGGGCCGTTCACTCCCGGT
TATGTCGCCGACCAGGCGCTGTCGCAGGAAATCGCCGAACTCGGCGTGATCCTGCTGATGTTCGGCGTCGGC
CTGCACTTCTCGCTCAAGGACCTGCTCTCGGTGAAGGCCATCGCCATTCCCGGGGCGCTGGTGCAGATCGGC
GTCGCCACGCTGCTTGGCATCGGCCTGGCCAAGCTGCTCGGCTGGAGCTTCGGCGGCGGCCTGGTATTCGGC
CTGAGCCTGTCGGTGGCCAGTACCGTGGTGCTGTTGCGCGCCCTGGAGCAGCGCCAGTTGCTGGACACCAAG
CGTGGCAGGATCGCCATCGGCTGGCTGATCGTCGAGGACCTGGCGATGGTCCTGACCCTGGTACTCCTGCCG
GCGCTCGCCGGCACCCTCGGCGGCAAGACCGACGGCGGCGACGCCGGTCTGCTCTGGCCGCTGCTGATTACC
CTGGGCAAGGTCGCCGCCTTCGTCGCCCTGATGATCTTCGGCGGTCGCCGGGTGGTGCCCTGGGTGCTGGAG
AGGATCGCCGCCAGCGGTTCGCGGGAACTCTTCACCCTGGCCGTGCTGGCCATCGCCCTGGGCATCGCCTAT
GGCTCGGCGGTGCTGTTCGGGGTGTCCTTCGCGCTAGGCGCCTTCTTCGCCGGGATGATCCTCAACGAGTCC
GAACTCAGCCACGAGGCGGCGGAGAACTCGTTGCCGCTGCGCGACGCTTTCGCGGTGCTGTTCTTCGTCTCG
GTGGGGATGCTGTTCAATCCGATGATCCTGTTGCAGGAGCCGCTGACGGTCCTGGCCACCTTCCTGGTCATC
GTCTTCGGCAAGTCGGTGGCCGCCTACCTGATCGTCCGCGCCTTCGGCCATCCGAACAGCACCGCACTGGTG
ATCGCCGCCAGCCTGGCGCAGATCGGCGAGTTTTCCTTCATTCTCATCGGCCTGGGCATTGGCCTCGAACTG
GTGCCGGAGCAGAGCCGCGACCTGGTGCTGGCCGGGGCGATCCTGTCGATCCTGGTCAATCCGCTGCTGTTC
ATCGCCATCGATCGCCTGCAGCAACGCAAGGAGCAGCGCCTGGCGGAGGCCGCTGGCGGGGTTCGCGAGATG
CCGGCGCAGGACCTGCCGCCGCCGATCCTGGAGCGCGAGCATGCGGTGCTGATCGGTCATGGCCGGGTTGGC
GGGTTGGTCAGCGCTCGCCTGCGCGCCGCCGGGACGCCCTTCGTGGTGGTGGTGGACAAGCGTGACAAGGCC
GACGAACTGCGCGAACAGGGCTACAGCGTGGTCCTCGGCAACGCCGCCAGTCCCGGCGTGCTGGAACTGGCC
AACATCGCCGAGGCGCGCTGGTTGCTGATCGCCATTCCCAACGGCTTCGAGGCCGGGCAGATCGCCAGCCAC
GCCCGCGCGGTGAACCCGCCGCTGGACATCGTCGCCCGGGCGCATTTCGACGCCGAGGTGGACTACCTGGAG
CAGAACGGCGCCAACCTGGTGATCATGGGCGAGCGCGAGATCGCCTGCGGCATGGTCCATCGCCTGGGACTC
GACCGTGACGAGCGCGGCGCCGACGCACCGCTGCCGCAGTCGGCCTGA