ViewGene
Locus Name:
GeneID:
Location:

GeneID:6270
TrivialName: PA14_23400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23400
PAO1 Ortholog Locus:
Sequence Length:1350
Protein Length:449
Start: 2031887
Stop: 2033236
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM27711.1|AF498411_8 (AF498411) ORF_8; similar to u-PAR/Ly-6 domain; potential multiple membrane spanning domains. [Pseudomonas aeruginosa]
Identities = 444/444 (100%), Positives = 444/444 (100%)
Sequence:
GTGGGAAGCCAAGACATGGATGAGTTTTTTTATTTAAAGCTTATTAATATATTTCTATCATCTTTCTTCCTG
CTGGGCGCTTGGTGTGCACGGAAGATTTTTAGTGTATGGCTAAACCCGGTATCTATATTCTCGCTACTTTGG
TTTTTTTATACGGTATTTCCACTTCTGGTTGCATTTGAGGCGCCGGTTAGTCCCTTTGCTATTCTCTATATA
TTAATATTCTGTTTTGTTTTTTCATTGTCTAGCTTCGTCTTTCCATGGGGGGTTGCATTTTCCCGTAATGAA
AATAAGCCGAATGCAAGTTGTTATTTTGATGTGCCGTTAATGGTTTTGGCCTTTTATTCTTGTTCGGGAATT
TCCGCCATAATGATTTTTTGGGGTGTTTTACAGCAGGGAATATCGCTTGAACAGTTGCTAAACAACCCTGTT
TCTATAGGTGGTATCTATGCAGGTAAAAGATATTCCGGGGAAATTGTCTCAAGTGTATTTTCGCAAGTTGGC
TTGCAGTGCAGTTATTATACGGCAGTATTTGGCGGCTTAATATATGGCGCTAGAAGTGAAGCGCGCGGTCGT
TTTAAGTTACTGTTTTTTACTTTTTTACCTGCTTTGCTTGTTATGTTGTTGCAAAGTGCTAAAGGACTATTC
TTTTTCTCAATATTTTTATTTTTTGGCGGGATGTTAGTTTCGCGAGTTTATAATAAAAACTATACGCTAGTA
GGCTTTAAAGATTTCAGATTTTTGCTCTTATATGGACTTCTAATACTTCCTATATTGATTTTTTCTTTTCTG
TCTCGTGGGATTTATCAATTGGATGATACTGCTTTGATGATAAATCGGCTCAGGTACTATCTTGTTACATAT
TCTTCTGTGCATTTGCCGGCTTTTTCAGACTGGTTCTCTGAACGCTATTTCGGTGAGTCGCTAATGCATTAT
AGACAAGAGTCATCAACTCTAGGTTTTTATACTTTCATGTCGTTTTTTCAGTTAGCCGGAGATGATAGAAGT
GTAGCTATGGGAGTGTATGACGAGTTTTTTACCTATGGTGAATATGTAAAAGGAAACCTCTATACAGTTTTT
CGAGGAATAATAACGGATTTTGGTTTGCTGGGTAGTTTATTTTTTGCTTTTATACTTGGTCTTTTCTGTAAT
CTTTGCTATTGGCGGCTTTTGTGTCGAAATGGCAGCGCATTTGCTATTTTATTTTTTTGCTATTTTGTCGCT
ATAAGCTATCAGACTTATATCATTAGTTCGCTGACCTGGCTTACTCTGCCATTTGTTTTTATTGTTCAGTGG
TTTATGCTTGGTTTTCTGTTGAAGTTTAGGTTCTATACGAGGTCTAAGGTGTGA
Translation:
MGSQDMDEFFYLKLINIFLSSFFLLGAWCARKIFSVWLNPVSIFSLLWFFYTVFPLLVAFEAPVSPFAILYI
LIFCFVFSLSSFVFPWGVAFSRNENKPNASCYFDVPLMVLAFYSCSGISAIMIFWGVLQQGISLEQLLNNPV
SIGGIYAGKRYSGEIVSSVFSQVGLQCSYYTAVFGGLIYGARSEARGRFKLLFFTFLPALLVMLLQSAKGLF
FFSIFLFFGGMLVSRVYNKNYTLVGFKDFRFLLLYGLLILPILIFSFLSRGIYQLDDTALMINRLRYYLVTY
SSVHLPAFSDWFSERYFGESLMHYRQESSTLGFYTFMSFFQLAGDDRSVAMGVYDEFFTYGEYVKGNLYTVF
RGIITDFGLLGSLFFAFILGLFCNLCYWRLLCRNGSAFAILFFCYFVAISYQTYIISSLTWLTLPFVFIVQW
FMLGFLLKFRFYTRSKV*
AnnotationID:6271GeneID:6270
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 12:12:02
Gene Name:ORF_8
Confidence Code:4
GeneProduct:similar to u-PAR/Ly-6 domain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
O-antigen (outer carbohydrate layer) biosynthesis
Homology:
gi|20559948|gb|AAM27711.1|  ORF_8; similar to u-PAR/Ly-6 domain; potential multiple membrane 
spanning domains. [Pseudomonas aeruginosa]
gi|20559781|gb|AAM27560.1|  ORF_8; similar to u-PAR/Ly-6 domain; potential multiple membrane 
spanning domains. [Pseudomonas aeruginosa]
     Length=444
     Score =  901 bits (2328),  Expect = 0.0
     Identities = 444/444 (100%), Positives = 444/444 (100%), Gaps = 0/444 (0%)
Structural Features:






   
Genomic Context:
Part of variable O-antigen biosynthetic locus in P. aeruginosa.







   
Comment:
Most similar to ORF_8 found in P. aeruginosa serotypes 010 and 019.



















    ReferenceID:16068




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29657




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31520




  
Author/Investigator(s):
        Raymond CK, Sims EH, Kas A, Spencer DH, Kutyavin TV, Ivey RG, Zhou Y, Kaul R, Clendenning JB, Olson MV.





  
Title:
        Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa.




  
PubMed:
        22053227


MedLine:
        12057956




    
Source:
J Bacteriol. 2002 Jul;184(13):3614-22.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=22053227&dopt=Citation









           
Homologs By Global Alignment 

           

       



     
Gene ID:6270
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198790
                           gb|AAM27711.1|AF498411_8
                           (AF498411) ORF_8; similar to u-PAR/Ly-6 domain; potential multiple membrane spanning domains. [Pseudomonas aeruginosa]
                           449
                           98.88
                           98.88
                           5
                           2328.0
     

     
     
198791
                           gb|AAM27560.1|AF498401_8
                           (AF498401) ORF_8; similar to u-PAR/Ly-6 domain; potential multiple membrane spanning domains. [Pseudomonas aeruginosa]
                           449
                           98.88
                           98.88
                           5
                           2328.0
     

     






      

          
GC ORFID: 49272How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2922044Stop: 2920695

          
Length: 1350


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGGAAGCCAAGACATGGATGAGTTTTTTTATTTAAAGCTTATTAATATATTTCTATCATCTTTCTTCCTG 
CTGGGCGCTTGGTGTGCACGGAAGATTTTTAGTGTATGGCTAAACCCGGTATCTATATTCTCGCTACTTTGG 
TTTTTTTATACGGTATTTCCACTTCTGGTTGCATTTGAGGCGCCGGTTAGTCCCTTTGCTATTCTCTATATA 
TTAATATTCTGTTTTGTTTTTTCATTGTCTAGCTTCGTCTTTCCATGGGGGGTTGCATTTTCCCGTAATGAA 
AATAAGCCGAATGCAAGTTGTTATTTTGATGTGCCGTTAATGGTTTTGGCCTTTTATTCTTGTTCGGGAATT 
TCCGCCATAATGATTTTTTGGGGTGTTTTACAGCAGGGAATATCGCTTGAACAGTTGCTAAACAACCCTGTT 
TCTATAGGTGGTATCTATGCAGGTAAAAGATATTCCGGGGAAATTGTCTCAAGTGTATTTTCGCAAGTTGGC 
TTGCAGTGCAGTTATTATACGGCAGTATTTGGCGGCTTAATATATGGCGCTAGAAGTGAAGCGCGCGGTCGT 
TTTAAGTTACTGTTTTTTACTTTTTTACCTGCTTTGCTTGTTATGTTGTTGCAAAGTGCTAAAGGACTATTC 
TTTTTCTCAATATTTTTATTTTTTGGCGGGATGTTAGTTTCGCGAGTTTATAATAAAAACTATACGCTAGTA 
GGCTTTAAAGATTTCAGATTTTTGCTCTTATATGGACTTCTAATACTTCCTATATTGATTTTTTCTTTTCTG 
TCTCGTGGGATTTATCAATTGGATGATACTGCTTTGATGATAAATCGGCTCAGGTACTATCTTGTTACATAT 
TCTTCTGTGCATTTGCCGGCTTTTTCAGACTGGTTCTCTGAACGCTATTTCGGTGAGTCGCTAATGCATTAT 
AGACAAGAGTCATCAACTCTAGGTTTTTATACTTTCATGTCGTTTTTTCAGTTAGCCGGAGATGATAGAAGT 
GTAGCTATGGGAGTGTATGACGAGTTTTTTACCTATGGTGAATATGTAAAAGGAAACCTCTATACAGTTTTT 
CGAGGAATAATAACGGATTTTGGTTTGCTGGGTAGTTTATTTTTTGCTTTTATACTTGGTCTTTTCTGTAAT 
CTTTGCTATTGGCGGCTTTTGTGTCGAAATGGCAGCGCATTTGCTATTTTATTTTTTTGCTATTTTGTCGCT 
ATAAGCTATCAGACTTATATCATTAGTTCGCTGACCTGGCTTACTCTGCCATTTGTTTTTATTGTTCAGTGG 
TTTATGCTTGGTTTTCTGTTGAAGTTTAGGTTCTATACGAGGTCTAAGGTGTGA