ViewGene
Locus Name:
GeneID:
Location:

GeneID:627
TrivialName: PA14_40960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40960
PAO1 Ortholog Locus:PA1822
Sequence Length:1689
Protein Length:562
Start: 3653661
Stop: 3651973
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05211.1|AE004608_10 (AE004608) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 562/562 (100%), Positives = 562/562 (100%)
Sequence:
ATGGTCACAGGAGCCACGTCCCTCAGTCTGGTGCGCGACGAGTTGTTCGCCACCATGGAACAGGCCGAACAG
GGTCTTGAGCAGTTCATTGCCGAGCGGCAGAACGGCAGCCTGCTGCAGCACGCCGTCGAATGCCTGCAACAG
ATCCGCGGCACCCTCAACCTGATCGAGCTGGCCGGCGCCGAGCTGCTGGCCCAGGAAGCCCTGCAGCTGGCG
ACCGACATTCCCACCGGCGTCAGCGAGGAGCGCGACGGCCAGCTGGCAGCCCTGGGCAACGCCCTGTACGTG
CTGCGCCGCTACCtgGAGAACGTCGAGGCCAATCGCCAGGAGATCCCCGAGCTGCTCTTGCCGGCGATCAAC
GAAGTGCGCTGTGccGCAGGGCAGCCGGCGCTGCCGGAAAGCTTCTTCTTCAGCGCCCGCCTGGATATCCCG
CGGCCGCCGAGCACCGCCATCGACCACCTGCCTTCCGAAGCCGAACTGGGCGAGGAAAGCCGGCGGATGCGC
CACATGTACCAGATCGGCCTGCTCGGCCTGATCCGCGAACAGAACCTCTATCCCAGCCTCAAGCTGATGGGC
CGCGCGCTGGCGCGCCTCGACAGCCTGCACGGCGGGGTGGCCCGTTCGCGGCTGTGCTGGATCGGCGCCGCG
GCGATCGAGTCGATCGTCGATGGCCAACTGTTGCCGCGCAAGTCGCGCAAGCAACTGTTCTCGCGCATCGAC
CGCGAGCTCAAGCAATTGCTGATCGGCCCGGCCTACGAGGCGCCGCGCCATCTGCTCAAGGAACTGCTCTAC
CTGGTGGCGCTGTCCGACGGCCAGGGCCCGCGTTCGCGCGAGGTCCGCGAACTGCATGGGCTGGCGCCGCTG
CCGTTCACCGACCACCTGCTGGAAGAGGAATCGCAGCGCCTGTCCGGCCCCGGCCAGTCGGTGATGCGTTCG
CTGTCCACGGCGATCCGCGAGGAACTCGCCGGGGTCAAGGACATGCTCGACCTGATCGAGCGCGGCGTGGCC
CAGCCGGACAGCCTGACCAACCTGCATGCGCAACTGGGCAAGCTGAGCAAGACCCTCGGCATGGTCGGCCTG
AACTCGGCCGGCACCGCCCTGCAGACCCAGCTACCCACCGTGGCCGCCTGGGCTGCCAGCGGCGTCGCCGAT
TCGCCGCCGGCGTTGCTGCGCCTGGCCGATGCGGTGCTCTACGTGGAAAGCATGGTCGGCAACCTCGAGCGC
GGCGAGCGCCGCATCATCCGGCCGACTCCGGCGGAGCCCGGGCAAGAAGCCGATGCGTTCGCCGTGCACCAG
TTGGCCGAGGCGCGCATCGTGGTGATCGAGGAGGCCAAGGCCGGCCTGGCCCTGGCCAAGCGTGCGATCACC
GCGTACCTGGAATCCAATGGCGACAAGCTCAACCTGGCCAACGTCCCGGCCAGCCTGCAGGCGGTCCGGGGC
GGCCTCTGGTTCCTCGGTCAGGAGCGCGCCGCGCTGCTGGTCGGCGGCTGCGCCGACTACATCCAGCAGCGC
ATGATCGAGACCGCGCAGATGCCTTCGGAACAGATGCTGGAAACCCTCGCCGACGCCCTGACCAGTCTCGAA
TACTATCTCGAGGGCGGTGCCGTGCTGCGTCCGCAGGGCCAGCCGGATGTCCTCGACCTGGCCAGCGCCAGC
GTCAAGGCGCTCGGGCTGCCGGTGGCCGCCTGA
Translation:
MVTGATSLSLVRDELFATMEQAEQGLEQFIAERQNGSLLQHAVECLQQIRGTLNLIELAGAELLAQEALQLA
TDIPTGVSEERDGQLAALGNALYVLRRYLENVEANRQEIPELLLPAINEVRCAAGQPALPESFFFSARLDIP
RPPSTAIDHLPSEAELGEESRRMRHMYQIGLLGLIREQNLYPSLKLMGRALARLDSLHGGVARSRLCWIGAA
AIESIVDGQLLPRKSRKQLFSRIDRELKQLLIGPAYEAPRHLLKELLYLVALSDGQGPRSREVRELHGLAPL
PFTDHLLEEESQRLSGPGQSVMRSLSTAIREELAGVKDMLDLIERGVAQPDSLTNLHAQLGKLSKTLGMVGL
NSAGTALQTQLPTVAAWAASGVADSPPALLRLADAVLYVESMVGNLERGERRIIRPTPAEPGQEADAFAVHQ
LAEARIVVIEEAKAGLALAKRAITAYLESNGDKLNLANVPASLQAVRGGLWFLGQERAALLVGGCADYIQQR
MIETAQMPSEQMLETLADALTSLEYYLEGGAVLRPQGQPDVLDLASASVKALGLPVAA*
AnnotationID:636GeneID:627
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 19:07:51
Gene Name:
Confidence Code:3
GeneProduct:pilin biosynthetic protein
Cell Localization:()
Synonyms:fimL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:1257




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18399




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:627
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1064
                           PA1822_tr
                           translation of PA1822
                           562
                           99.99
                           99.99
                           0
                           2786.0
     

     
     
40912
                           gb|AAG05211.1|AE004608_10
                           (AE004608) hypothetical protein PA1822 [Pseudomonas aeruginosa PAO1]
                           562
                           99.99
                           99.99
                           0
                           2786.0
     

     
     
40913
                           gb|AAC34567.1|
                           (AF083252) pilin biosynthetic protein [Pseudomonas aeruginosa]
                           562
                           96.61
                           96.61
                           18
                           2697.0
     

     






      

          
GC ORFID: 43629How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1822Glimmer Score: 

          
Start: 1300249Stop: 1301937

          
Length: 1689


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1822 translation of PA1822Homolog Bit Score 1077.0

          
Other Homologs:  t_PA1822 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCACAGGAGCCACGTCCCTCAGTCTGGTGCGCGACGAGTTGTTCGCCACCATGGAACAGGCCGAACAG 
GGTCTTGAGCAGTTCATTGCCGAGCGGCAGAACGGCAGCCTGCTGCAGCACGCCGTCGAATGCCTGCAACAG 
ATCCGCGGCACCCTCAACCTGATCGAGCTGGCCGGCGCCGAGCTGCTGGCCCAGGAAGCCCTGCAGCTGGCG 
ACCGACATTCCCACCGGCGTCAGCGAGGAGCGCGACGGCCAGCTGGCAGCCCTGGGCAACGCCCTGTACGTG 
CTGCGCCGCTACCtgGAGAACGTCGAGGCCAATCGCCAGGAGATCCCCGAGCTGCTCTTGCCGGCGATCAAC 
GAAGTGCGCTGTGccGCAGGGCAGCCGGCGCTGCCGGAAAGCTTCTTCTTCAGCGCCCGCCTGGATATCCCG 
CGGCCGCCGAGCACCGCCATCGACCACCTGCCTTCCGAAGCCGAACTGGGCGAGGAAAGCCGGCGGATGCGC 
CACATGTACCAGATCGGCCTGCTCGGCCTGATCCGCGAACAGAACCTCTATCCCAGCCTCAAGCTGATGGGC 
CGCGCGCTGGCGCGCCTCGACAGCCTGCACGGCGGGGTGGCCCGTTCGCGGCTGTGCTGGATCGGCGCCGCG 
GCGATCGAGTCGATCGTCGATGGCCAACTGTTGCCGCGCAAGTCGCGCAAGCAACTGTTCTCGCGCATCGAC 
CGCGAGCTCAAGCAATTGCTGATCGGCCCGGCCTACGAGGCGCCGCGCCATCTGCTCAAGGAACTGCTCTAC 
CTGGTGGCGCTGTCCGACGGCCAGGGCCCGCGTTCGCGCGAGGTCCGCGAACTGCATGGGCTGGCGCCGCTG 
CCGTTCACCGACCACCTGCTGGAAGAGGAATCGCAGCGCCTGTCCGGCCCCGGCCAGTCGGTGATGCGTTCG 
CTGTCCACGGCGATCCGCGAGGAACTCGCCGGGGTCAAGGACATGCTCGACCTGATCGAGCGCGGCGTGGCC 
CAGCCGGACAGCCTGACCAACCTGCATGCGCAACTGGGCAAGCTGAGCAAGACCCTCGGCATGGTCGGCCTG 
AACTCGGCCGGCACCGCCCTGCAGACCCAGCTACCCACCGTGGCCGCCTGGGCTGCCAGCGGCGTCGCCGAT 
TCGCCGCCGGCGTTGCTGCGCCTGGCCGATGCGGTGCTCTACGTGGAAAGCATGGTCGGCAACCTCGAGCGC 
GGCGAGCGCCGCATCATCCGGCCGACTCCGGCGGAGCCCGGGCAAGAAGCCGATGCGTTCGCCGTGCACCAG 
TTGGCCGAGGCGCGCATCGTGGTGATCGAGGAGGCCAAGGCCGGCCTGGCCCTGGCCAAGCGTGCGATCACC 
GCGTACCTGGAATCCAATGGCGACAAGCTCAACCTGGCCAACGTCCCGGCCAGCCTGCAGGCGGTCCGGGGC 
GGCCTCTGGTTCCTCGGTCAGGAGCGCGCCGCGCTGCTGGTCGGCGGCTGCGCCGACTACATCCAGCAGCGC 
ATGATCGAGACCGCGCAGATGCCTTCGGAACAGATGCTGGAAACCCTCGCCGACGCCCTGACCAGTCTCGAA 
TACTATCTCGAGGGCGGTGCCGTGCTGCGTCCGCAGGGCCAGCCGGATGTCCTCGACCTGGCCAGCGCCAGC 
GTCAAGGCGCTCGGGCTGCCGGTGGCCGCCTGA