ViewGene
Locus Name:
GeneID:
Location:

GeneID:6268
TrivialName: PA14_23430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23430
PAO1 Ortholog Locus:
Sequence Length:1653
Protein Length:550
Start: 2036366
Stop: 2038018
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM27714.1|AF498411_11 (AF498411) ORF_11; similar to Prenyltransferase and squalene oxidase [Pseudomonas aeruginosa]
Identities = 550/550 (100%), Positives = 550/550 (100%)
Sequence:
ATGGCACTTCAAAAACTCGTCCGTCTCTATCATACGCTTCGGTACCTGAGGCTCAAGCAGATAATATTTCGA
GTGTATTATCGCTTTGCCCAGGTCCGAGTTCATATTTATCGAAATGTTGCTGTGCGTCGTTGGCGTAGGGAC
TGGTCTGCGCCCTCTTGGAGGAATTTGTCAACGAATGATGCTGTGGAGTTCACCTTTCTCGGGATAACAGGG
AAAGTGCAGTGCCCCGAGGACTGGCAAGCTGATAGGAGCAGTAAATTATGGCTCTATAATCTGCACTATTTG
GATGATCTGAACGCTAGGGACATTGGCAGTCAGCCTGGGCTAGCCGATAAACTAATTCAAAGTTGGATCCAG
GCTAATCCACCGGTATCCGGTGAAGGTTGGGAGCCTTATCCTCTTTCCTTGCGTATCGTTAATCTTGTGAAA
TGGCTTGCTCGCCATGATGAGCGTTCGACCTTTCTGGCGGACAGTCTAGCTGTACAAGCGGACGCGCTGGTG
CAACAAGTAGAATATCATATCTTGGGAAATCATCTATTCGCTAATGGGAAGGCGTTGGTGTTTGCCGGCGCT
TATCTGTCAGGCGCGATGGCTGATCGTTGGCTTGCCAAGGGGTTACGGATACTTGACGAAGAGCTTCCTGAG
CAATTTCTGAATGATGGTGGGCATTTCGAATTGTCTCCGATGTATCACGCCACTTTACTCTGGGATATGTGC
GACCTGGTGAATCTCTCCACGCGGTCGGGCCTACCTGATTTGGCTGAGCGTCTACCGCAATGGCGAGAGGTT
GTGGTCCAAGGATTGAAGTGGCTTCGTAGCATGCAGCATCCGGATGGTAGAATTAGCTTCTTCAATGATGCT
GCATTCGGAATTGCACCTGAATATGAAGATATTGCAGCGTACGCCAAGCGCCTCGATATATCACCTCCAGCT
CATGAAAACCACCTGGCGGCGATTTATAATTCGGCTACAGGTTATGCTGCTGTACTTCCTGCCGATGGCGTG
AAAGCTATATTGGATCTTGCAAAGGTCGGTCCCGACTATCAGCCGGGACATGCGCATGCCGACACATTGAGT
TTTGAGTTAAGCGTCTTTGGAAAACGCTTAGTAGTCAATTCCGGAACTTCTCAGTACGGTGATGACTCTGAG
CGACAAAGGCAGCGTGGTACTGCGGCGCATAATACGGTGGGATTGCTTGGCTATGATTCCTCTGAAGTTTGG
GCGGGATTTCGCGTTGCAAGGCGTGCGGCAGTAGTAATTGAGCGATTCGAGGTTGAACCTGAAATAACCTGT
ATTCAGGCCAGCCATGATGGATATGGAAGGCTTGTGAAGGGGCTACGGCATCGTCGCACCTGGACCTTCACT
CGTACGAGTATGGAAATTTTCGATAGCATAACAGGTGATCAGGTTGTGGCTACTTCTCGATTCTTCTTTAGT
CCAGAAGTAAAGGTTTCTATGAAGGCCGATGGATTTGTTGCCGATATGGGGGCGGGAAAGAAAGTCTCTATC
GATTTCTCGGGAAGTGATGATGTTCGTTTGATTTCTTCAACGTGGCATCCGGAGTTTGGGTGTTCATTGGCC
AATCAGTGTCTCGTGGCGACTTTTAGTGGTGATTCGCTGACTACTCGTATTTGCTGGGGTGGAATTTGA
Translation:
MALQKLVRLYHTLRYLRLKQIIFRVYYRFAQVRVHIYRNVAVRRWRRDWSAPSWRNLSTNDAVEFTFLGITG
KVQCPEDWQADRSSKLWLYNLHYLDDLNARDIGSQPGLADKLIQSWIQANPPVSGEGWEPYPLSLRIVNLVK
WLARHDERSTFLADSLAVQADALVQQVEYHILGNHLFANGKALVFAGAYLSGAMADRWLAKGLRILDEELPE
QFLNDGGHFELSPMYHATLLWDMCDLVNLSTRSGLPDLAERLPQWREVVVQGLKWLRSMQHPDGRISFFNDA
AFGIAPEYEDIAAYAKRLDISPPAHENHLAAIYNSATGYAAVLPADGVKAILDLAKVGPDYQPGHAHADTLS
FELSVFGKRLVVNSGTSQYGDDSERQRQRGTAAHNTVGLLGYDSSEVWAGFRVARRAAVVIERFEVEPEITC
IQASHDGYGRLVKGLRHRRTWTFTRTSMEIFDSITGDQVVATSRFFFSPEVKVSMKADGFVADMGAGKKVSI
DFSGSDDVRLISSTWHPEFGCSLANQCLVATFSGDSLTTRICWGGI*
AnnotationID:6269GeneID:6268
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 13:01:26
Gene Name:ORF_11
Confidence Code:4
GeneProduct:similar to Prenyltransferase and squalene oxidase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
O antigen biosynthesis
Homology:
gi|20559951|gb|AAM27714.1|  ORF_11; similar to Prenyltransferase and squalene oxidase [Pseudomonas aeruginosa]
gi|20559784|gb|AAM27563.1|  ORF_11; similar to Prenyltransferase and squalene oxidase [Pseudomonas aeruginosa]
     Length=550
     Score = 1123 bits (2905),  Expect = 0.0
     Identities = 550/550 (100%), Positives = 550/550 (100%), Gaps = 0/550 (0%)
Structural Features:
COG5360, Uncharacterized protein conserved in bacteria [Function unknown].
             CD-Length = 566 residues,  71.0% aligned
             Score = 90.8 bits (225), Expect = 4e-19
Genomic Context:
Part of variable O-antigen biosynthetic locus in P. aeruginosa.
Comment:
Identical to ORF_11 found in P. aeruginosa serotypes 010 and 019.
ReferenceID:12382
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29653
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31523
Author/Investigator(s): Raymond CK, Sims EH, Kas A, Spencer DH, Kutyavin TV, Ivey RG, Zhou Y, Kaul R, Clendenning JB, Olson MV.
Title: Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa.
PubMed: 12057956
MedLine: 22053227
Source:
J Bacteriol. 2002 Jul;184(13):3614-22.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/utils/qmap.cgi?uid=22053227&form=6&db=m&Dopt=r
Homologs By Global Alignment
Gene ID:6268

Identity:

 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198781 gb|AAM27714.1|AF498411_11 (AF498411) ORF_11; similar to Prenyltransferase and squalene oxidase [Pseudomonas aeruginosa] 550 99.99 99.99 0 2905.0
198782 gb|AAM27563.1|AF498401_11 (AF498401) ORF_11; similar to Prenyltransferase and squalene oxidase [Pseudomonas aeruginosa] 550 99.99 99.99 0 2905.0
GC ORFID: 49270How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2917565Stop: 2915913
Length: 1653
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCACTTCAAAAACTCGTCCGTCTCTATCATACGCTTCGGTACCTGAGGCTCAAGCAGATAATATTTCGA
GTGTATTATCGCTTTGCCCAGGTCCGAGTTCATATTTATCGAAATGTTGCTGTGCGTCGTTGGCGTAGGGAC
TGGTCTGCGCCCTCTTGGAGGAATTTGTCAACGAATGATGCTGTGGAGTTCACCTTTCTCGGGATAACAGGG
AAAGTGCAGTGCCCCGAGGACTGGCAAGCTGATAGGAGCAGTAAATTATGGCTCTATAATCTGCACTATTTG
GATGATCTGAACGCTAGGGACATTGGCAGTCAGCCTGGGCTAGCCGATAAACTAATTCAAAGTTGGATCCAG
GCTAATCCACCGGTATCCGGTGAAGGTTGGGAGCCTTATCCTCTTTCCTTGCGTATCGTTAATCTTGTGAAA
TGGCTTGCTCGCCATGATGAGCGTTCGACCTTTCTGGCGGACAGTCTAGCTGTACAAGCGGACGCGCTGGTG
CAACAAGTAGAATATCATATCTTGGGAAATCATCTATTCGCTAATGGGAAGGCGTTGGTGTTTGCCGGCGCT
TATCTGTCAGGCGCGATGGCTGATCGTTGGCTTGCCAAGGGGTTACGGATACTTGACGAAGAGCTTCCTGAG
CAATTTCTGAATGATGGTGGGCATTTCGAATTGTCTCCGATGTATCACGCCACTTTACTCTGGGATATGTGC
GACCTGGTGAATCTCTCCACGCGGTCGGGCCTACCTGATTTGGCTGAGCGTCTACCGCAATGGCGAGAGGTT
GTGGTCCAAGGATTGAAGTGGCTTCGTAGCATGCAGCATCCGGATGGTAGAATTAGCTTCTTCAATGATGCT
GCATTCGGAATTGCACCTGAATATGAAGATATTGCAGCGTACGCCAAGCGCCTCGATATATCACCTCCAGCT
CATGAAAACCACCTGGCGGCGATTTATAATTCGGCTACAGGTTATGCTGCTGTACTTCCTGCCGATGGCGTG
AAAGCTATATTGGATCTTGCAAAGGTCGGTCCCGACTATCAGCCGGGACATGCGCATGCCGACACATTGAGT
TTTGAGTTAAGCGTCTTTGGAAAACGCTTAGTAGTCAATTCCGGAACTTCTCAGTACGGTGATGACTCTGAG
CGACAAAGGCAGCGTGGTACTGCGGCGCATAATACGGTGGGATTGCTTGGCTATGATTCCTCTGAAGTTTGG
GCGGGATTTCGCGTTGCAAGGCGTGCGGCAGTAGTAATTGAGCGATTCGAGGTTGAACCTGAAATAACCTGT
ATTCAGGCCAGCCATGATGGATATGGAAGGCTTGTGAAGGGGCTACGGCATCGTCGCACCTGGACCTTCACT
CGTACGAGTATGGAAATTTTCGATAGCATAACAGGTGATCAGGTTGTGGCTACTTCTCGATTCTTCTTTAGT
CCAGAAGTAAAGGTTTCTATGAAGGCCGATGGATTTGTTGCCGATATGGGGGCGGGAAAGAAAGTCTCTATC
GATTTCTCGGGAAGTGATGATGTTCGTTTGATTTCTTCAACGTGGCATCCGGAGTTTGGGTGTTCATTGGCC
AATCAGTGTCTCGTGGCGACTTTTAGTGGTGATTCGCTGACTACTCGTATTTGCTGGGGTGGAATTTGA