ViewGene
Locus Name:
GeneID:
Location:

GeneID:626
TrivialName: PA14_24380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24380
PAO1 Ortholog Locus:PA3075
Sequence Length:1632
Protein Length:543
Start: 2123471
Stop: 2121840
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06463.1|AE004731_11 (AE004731) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 543/543 (100%), Positives = 543/543 (100%)
Sequence:
ATGATCCGCCTGTTCTGCAGCCTGCTTCTCGCGCTCCTCTGCGTCTCCGCCCACGCCAGCTTCAGCGCCAGC
GTCGACCGCGCCCGCCTGACCGAAGGGGAAAGCGTCGAACTGACGCTGGAATCGGACGACCCGACCCTCTTC
GGCAAGCCCGACCTGAGCCCGCTGGACGCCCTCTTCGAGGTCCTCGGCACGCGCCAGGTCAACCGTCTCGCC
ACGCAGAACGGCCGGGCCCAGGCCACCACCCGCTGGATCGTCACCCTCCTGCCGAAGCAGAGCGGCTACGTG
GCGATCCCGCCGATCAGCCTCGGCGCCAGCAGCACCCAGCCGATCAGGCTGCACGTACTGGAGGCGCGCGAC
CGCGCCAAGAGCAGCAAGCTGGCGCCGGTCTTCATCGATGCCAGCGTCGACCAGGAGACGGTCTACGTGCAG
GCCCAGGCGATCCTCACCCTGCGCATCTACCACTCGGTGTCGCTATACGACGACAGCAGCCTGACCCCGCTG
GCGATGAACGACGCGAAGGTCGAACAGCTCGGCGAGGCGCGTACCTACGAGAAGGAGATCAACGGCATCCGC
CACGGCGTGATCGAGGTGCGCTACGCGATCTTCCCGCAGAAGAGCGGCACCCTGGAGATTCCTGCGCAAGCC
TTCAGCGCGACCCTGGTCGACCGTGGCAGCGACGACTACAACCCCTTCGGCCCGCGCCCCGGCCGGCAGATG
CGGGTGACTTCGCCGAGCATCCCGCTGCAGGTCCGGCCCAAGCCTGCCGACTATCCGGCCGACGCGCCCTGG
ATGCCGGCCCGCGCGCTGAGCATCAGCGAAAGCTGGAGCCCGCAGCCGGAGCAGGCGCAGGTCGGCGAATCG
CTGACGCGCAATGTGCTGCTGAAGGTCGAGGGGCTTTCCGGCACCCAGCTTCCGCCGTTGCCGCTGCCCGAC
GTGCAAGGCCTGCGGCGCTACCCGGACCAACCGCAGTTGGCCGACCAGAGCACCGACCAGGGCCTCATCGGC
AGTCGCGAGGAACGCGAGGCGCTGGTGCCCGAGCAGGCCGGGCGCATCGAGTTGCCGGCGCTCGAAGTGGTC
TGGTGGAACACCCGCGAAGACCGCCTGGAGCGCACCAGCCTGCCACCGCGCACCCTGGAAGTGGCCGCCGCG
CCGCAGGCCGAGGCGGAGCCGCCGGCGGCGGCGCTGCCGCTCGGCGAACGCCTGGAGCCGACGCTCTGGCCC
TGGCAACTGGCTACCGCCGTGCTGGCCCTGACCACCCTGCTCGGCTTCGGCCTCTGGTGGCGCGCCCGCCAG
CTGCCGGCGGTGATCCGCGCCGCAGCCAACGGCCCGAGCAGCCGCAGCCTGCTCGACGAGCTGCGCCGCGCC
TGCCTGGCCAACGATCCCCAGGCGACCCGCCAGGCCCTGGACGCCTGGGCTCGTCAGCAACCCGATACCCTG
GCCGACATGGCGGCCCGCTTCGTACCGCTGTCCGACGCCCTGGATGGCCTCAACGGCGCGCTGTACAGCGAG
AGCGGCCATTCCTGGCAGGGCGAGGACCTGTGGCGGGCGATCCGCGCCCTGCCCACCACGGAACAAGCGCCG
GCGGGAGCGGTCGACAATGGCGGCCTGCCACCGCTCTATCCGCGCTGA
Translation:
MIRLFCSLLLALLCVSAHASFSASVDRARLTEGESVELTLESDDPTLFGKPDLSPLDALFEVLGTRQVNRLA
TQNGRAQATTRWIVTLLPKQSGYVAIPPISLGASSTQPIRLHVLEARDRAKSSKLAPVFIDASVDQETVYVQ
AQAILTLRIYHSVSLYDDSSLTPLAMNDAKVEQLGEARTYEKEINGIRHGVIEVRYAIFPQKSGTLEIPAQA
FSATLVDRGSDDYNPFGPRPGRQMRVTSPSIPLQVRPKPADYPADAPWMPARALSISESWSPQPEQAQVGES
LTRNVLLKVEGLSGTQLPPLPLPDVQGLRRYPDQPQLADQSTDQGLIGSREEREALVPEQAGRIELPALEVV
WWNTREDRLERTSLPPRTLEVAAAPQAEAEPPAAALPLGERLEPTLWPWQLATAVLALTTLLGFGLWWRARQ
LPAVIRAAANGPSSRSLLDELRRACLANDPQATRQALDAWARQQPDTLADMAARFVPLSDALDGLNGALYSE
SGHSWQGEDLWRAIRALPTTEQAPAGAVDNGGLPPLYPR*
AnnotationID:635GeneID:626
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 15:03:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3075
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:1255




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18397




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:626
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1063
                           PA3075_tr
                           translation of PA3075
                           543
                           99.99
                           99.99
                           0
                           2788.0
     

     
     
40909
                           gb|AAG06463.1|AE004731_11
                           (AE004731) hypothetical protein PA3075 [Pseudomonas aeruginosa PAO1]
                           543
                           99.99
                           99.99
                           0
                           2788.0
     

     
     
40910
                           gb|AAO57233.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           554
                           60.83
                           76.17
                           14
                           1754.0
     

     
     
40911
                           gb|AAN67641.1|AE016394_2
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           552
                           59.96
                           72.82
                           18
                           1644.0
     

     






      

          
GC ORFID: 43628How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3075Glimmer Score: 

          
Start: 2830459Stop: 2832090

          
Length: 1632


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3075 translation of PA3075Homolog Bit Score 1078.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene668 (ORF: BLASTX 687.0), t_PA3075 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGCCTGTTCTGCAGCCTGCTTCTCGCGCTCCTCTGCGTCTCCGCCCACGCCAGCTTCAGCGCCAGC 
GTCGACCGCGCCCGCCTGACCGAAGGGGAAAGCGTCGAACTGACGCTGGAATCGGACGACCCGACCCTCTTC 
GGCAAGCCCGACCTGAGCCCGCTGGACGCCCTCTTCGAGGTCCTCGGCACGCGCCAGGTCAACCGTCTCGCC 
ACGCAGAACGGCCGGGCCCAGGCCACCACCCGCTGGATCGTCACCCTCCTGCCGAAGCAGAGCGGCTACGTG 
GCGATCCCGCCGATCAGCCTCGGCGCCAGCAGCACCCAGCCGATCAGGCTGCACGTACTGGAGGCGCGCGAC 
CGCGCCAAGAGCAGCAAGCTGGCGCCGGTCTTCATCGATGCCAGCGTCGACCAGGAGACGGTCTACGTGCAG 
GCCCAGGCGATCCTCACCCTGCGCATCTACCACTCGGTGTCGCTATACGACGACAGCAGCCTGACCCCGCTG 
GCGATGAACGACGCGAAGGTCGAACAGCTCGGCGAGGCGCGTACCTACGAGAAGGAGATCAACGGCATCCGC 
CACGGCGTGATCGAGGTGCGCTACGCGATCTTCCCGCAGAAGAGCGGCACCCTGGAGATTCCTGCGCAAGCC 
TTCAGCGCGACCCTGGTCGACCGTGGCAGCGACGACTACAACCCCTTCGGCCCGCGCCCCGGCCGGCAGATG 
CGGGTGACTTCGCCGAGCATCCCGCTGCAGGTCCGGCCCAAGCCTGCCGACTATCCGGCCGACGCGCCCTGG 
ATGCCGGCCCGCGCGCTGAGCATCAGCGAAAGCTGGAGCCCGCAGCCGGAGCAGGCGCAGGTCGGCGAATCG 
CTGACGCGCAATGTGCTGCTGAAGGTCGAGGGGCTTTCCGGCACCCAGCTTCCGCCGTTGCCGCTGCCCGAC 
GTGCAAGGCCTGCGGCGCTACCCGGACCAACCGCAGTTGGCCGACCAGAGCACCGACCAGGGCCTCATCGGC 
AGTCGCGAGGAACGCGAGGCGCTGGTGCCCGAGCAGGCCGGGCGCATCGAGTTGCCGGCGCTCGAAGTGGTC 
TGGTGGAACACCCGCGAAGACCGCCTGGAGCGCACCAGCCTGCCACCGCGCACCCTGGAAGTGGCCGCCGCG 
CCGCAGGCCGAGGCGGAGCCGCCGGCGGCGGCGCTGCCGCTCGGCGAACGCCTGGAGCCGACGCTCTGGCCC 
TGGCAACTGGCTACCGCCGTGCTGGCCCTGACCACCCTGCTCGGCTTCGGCCTCTGGTGGCGCGCCCGCCAG 
CTGCCGGCGGTGATCCGCGCCGCAGCCAACGGCCCGAGCAGCCGCAGCCTGCTCGACGAGCTGCGCCGCGCC 
TGCCTGGCCAACGATCCCCAGGCGACCCGCCAGGCCCTGGACGCCTGGGCTCGTCAGCAACCCGATACCCTG 
GCCGACATGGCGGCCCGCTTCGTACCGCTGTCCGACGCCCTGGATGGCCTCAACGGCGCGCTGTACAGCGAG 
AGCGGCCATTCCTGGCAGGGCGAGGACCTGTGGCGGGCGATCCGCGCCCTGCCCACCACGGAACAAGCGCCG 
GCGGGAGCGGTCGACAATGGCGGCCTGCCACCGCTCTATCCGCGCTGA