ViewGene
Locus Name:
GeneID:
Location:

GeneID:625
TrivialName: PA14_63080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63080
PAO1 Ortholog Locus:PA4770
Sequence Length:1683
Protein Length:560
Start: 5627315
Stop: 5628997
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08156.1|AE004890_9 (AE004890) L-lactate permease [Pseudomonas aeruginosa PAO1]
Identities = 558/562 (99%), Positives = 559/562 (99%), Gaps = 2/562 (0%)
Sequence:
ATGCAAGCCTGGCAACAACTCTATACCCCCCTAGGCAGTCTCGGCCTGTCGGCCGCCGCGGCCGTCATCCCG
ATCGTGTTCTTCTTCCTCGCCCTGGCGGTATTCCGCCTCAAGGGCCACATCGCCGGCAGCATCACCCTGGCG
CTGGCCATCGCGGTGGCCATCTTCGCCTTCCACATGCCCGCCGACATGGCCTTCGCCGCCGCCGGCTACGGC
TTCCTCTACGGTCTCTGGCCGATCGCCTGGATCATCGTCGCGGCGGTCTTCCTCTACAAACTGACGGTGAAG
AGCGGCCAGTTCGAGGTGATCCGCAGCTCGGTGCTGTCGATTACCGGCGACCAGCGCCTGCAGGTACTGCTG
ATCGGCTTCTCCTTCGGGGCCTTCCTCGAAGGCGCCGCCGGTTTCGGCGCGCCGGTGGCGATCACCGCCGCC
CTGCTCGTCGGCCTCGGCTTCAATCCGCTCTACGCCGCCGGCCTGTGCCTGATCGCCAACACTGCGCCGGTG
GCCTTCGGCGCACTGGGCATCCCGATCATCGTCGCCGGCCAGGTGACCGGCATCGACGCCTTCAAGATCGGC
GCCATGACCGGCCGCCAACTGCCGTTCCTGTCGATCCTGGTACCGTTCTGGCTGGTGTTCATGATGGACGGC
TGGCGCGGCATCCGCGAAACCTGGCCGGCCGCCATCGTCGCCGGCGGCAGCTTCGCCATCACTCAGTACCTG
ACGTCCAACTTCATCGGCCCGGAGTTGCCGGACATCACCTCGGCGCTGGTCAGCCTGGTCTCCCTGACCCTG
TTCCTCAAGGTCTGGCAGCCGCAGGGCGCCAGCGAAGCGCTCGCCGCCAGCGGCGGCGCGGCCGTGGCCGGT
GGCGGCTACGGCGGGCAACGCAGCGTCGAACCGTCCGCCTACAGCTTCGGCGAGATCCTCAAGGCCTGGTCG
CCGTTCCTGGTGCTCACCGTACTGGTGACCATCTGGACCCTGAAACCTTTCAAGGCCCTGTTCGCCCCGGGC
GGCGAGCTCTACTGGCTGGTGTTCAACTTCGCCATCCCGCACCTCGACCAACTGGTGGTCAAGGGCGCGCCG
ATCGCCACCAGCGCCACGCCGATCGCCGCGGTATTCAAGTTCGACCCGATCTCCGCCACCGGCACGGCGATC
TTCCTCTCGGCGCTGGTATCGATGTTCATCCTGCGCATCGGAGCGAAAATTGGTATTACCACTTTCAAGGAA
GTCCTGGTGGAGCTGAAGTGGCCGATCCTGTCCATCGGCATGGTCCTGGCCTTCGCCTTCGTCACCAACTAC
TCGGGCATGTCCACCACCCTGGCCCTGGTCCTGGCCGGTACCGGCGCGGCGTTCCCGTTCTTCTCGCCGTTC
CTCGGCTGGCTGGGGGTATTCCTGACCGGTTCGGATACGTCCTCCAACGCCCTGTTCAGCTCCCTGCAGTCG
ACCACCGCGCACCAGATCGGAGTCAGCGACACCCTGCTGGTGGCCGCCAATACCAGCGGCGGCGTGACCGGC
AAGATGATCTCCCCGCAATCCATCGCCGTGGCCTGTGCCGCGACCGGGATGGTCGGCAAGGAATCCGACCTG
TTCCGCTTCACCCTGAAGCACAGCCTGATCTTCGCCGCGCTGGTCGGACTGATCACCCTGGCCCAGGCATAC
CTATTCACCGGCATGCTGGTGCACTGA
Translation:
MQAWQQLYTPLGSLGLSAAAAVIPIVFFFLALAVFRLKGHIAGSITLALAIAVAIFAFHMPADMAFAAAGYG
FLYGLWPIAWIIVAAVFLYKLTVKSGQFEVIRSSVLSITGDQRLQVLLIGFSFGAFLEGAAGFGAPVAITAA
LLVGLGFNPLYAAGLCLIANTAPVAFGALGIPIIVAGQVTGIDAFKIGAMTGRQLPFLSILVPFWLVFMMDG
WRGIRETWPAAIVAGGSFAITQYLTSNFIGPELPDITSALVSLVSLTLFLKVWQPQGASEALAASGGAAVAG
GGYGGQRSVEPSAYSFGEILKAWSPFLVLTVLVTIWTLKPFKALFAPGGELYWLVFNFAIPHLDQLVVKGAP
IATSATPIAAVFKFDPISATGTAIFLSALVSMFILRIGAKIGITTFKEVLVELKWPILSIGMVLAFAFVTNY
SGMSTTLALVLAGTGAAFPFFSPFLGWLGVFLTGSDTSSNALFSSLQSTTAHQIGVSDTLLVAANTSGGVTG
KMISPQSIAVACAATGMVGKESDLFRFTLKHSLIFAALVGLITLAQAYLFTGMLVH*
AnnotationID:634GeneID:625
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 11:11:34
Gene Name:lldP
Confidence Code:2
GeneProduct:L-lactate permease
Cell Localization:()
Synonyms:lctP,yghK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:glycolate permease
Functional Category Confidence Code:5
COGs:pfam02652,COG1620
Secondary Functional Category(ies):energy production and conversion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70307.1|AE016671_8 (AE016791) L-lactate transporter [Pseudomonas putida KT2440]
          Length = 556

 Score =  922 bits (2384), Expect = 0.0
 Identities = 474/561 (84%), Positives = 503/561 (89%), Gaps = 7/561 (1%)

>gb|AAN82150.1|AE016766_238 (AE016766) Glycolate permease glcA [Escherichia coli CFT073]
          Length = 560

 Score =  869 bits (2245), Expect = 0.0
 Identities = 431/559 (77%), Positives = 483/559 (86%)

>gb|AAP12092.1| (AE017014) L-lactate permease [Bacillus cereus ATCC 14579]
          Length = 553

 Score =  756 bits (1951), Expect = 0.0
 Identities = 374/558 (67%), Positives = 447/558 (80%), Gaps = 6/558 (1%)






 
Structural Features:
pfam02652, Lactate_perm, L-lactate permease.
CD-Length = 522 residues, 100.0% aligned
Score =  540 bits (1392), Expect = 2e-154
Identities = 314/535 (58%), Positives = 393/535 (73%), Gaps = 13/535 (2%)

COG1620, LldP, L-lactate permease 
[Energy production and conversion]
CD-Length = 522 residues, 100.0% aligned
Score =  535 bits (1380), Expect = 4e-153
Identities = 320/545 (58%), Positives = 384/545 (70%), Gaps = 23/545 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1253




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18395




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37673




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:625_cdd.html


    		




 
URL:

















    ReferenceID:37709




  
Author/Investigator(s):
        Dong JM, Taylor JS, Latour DJ, Iuchi S, Lin EC.





  
Title:
        Three overlapping lct genes involved in L-lactate utilization by Escherichia coli.




  
PubMed:
        8407843


MedLine:
        




    
Source:
J Bacteriol. 1993 Oct;175(20):6671-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8407843









           
Homologs By Global Alignment 

           

       



     
Gene ID:625
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1062
                           PA4770_tr
                           translation of PA4770
                           562
                           99.28
                           99.46
                           2
                           2794.0
     

     
     
40845
                           gb|AAG08156.1|AE004890_9
                           (AE004890) L-lactate permease [Pseudomonas aeruginosa PAO1]
                           562
                           99.28
                           99.46
                           2
                           2794.0
     

     
     
40846
                           gb|AAN70307.1|AE016671_8
                           (AE016791) L-lactate transporter [Pseudomonas putida KT2440]
                           562
                           84.34
                           89.50
                           8
                           2390.0
     

     
     
40847
                           gb|AAC76011.1|
                           (AE000380) putative permease [Escherichia coli K12]
                           562
                           77.58
                           86.83
                           4
                           2256.0
     

     
     
40848
                           gb|AAA69142.1|
                           (U28377) ORF_f560 [Escherichia coli]
                           562
                           77.58
                           86.83
                           4
                           2256.0
     

     






      

          
GC ORFID: 43627How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4770Glimmer Score: 

          
Start: 4890995Stop: 4892677

          
Length: 1683


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4770 translation of PA4770Homolog Bit Score 1080.0

          
Other Homologs:  t_PA4770 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGCCTGGCAACAACTCTATACCCCCCTAGGCAGTCTCGGCCTGTCGGCCGCCGCGGCCGTCATCCCG 
ATCGTGTTCTTCTTCCTCGCCCTGGCGGTATTCCGCCTCAAGGGCCACATCGCCGGCAGCATCACCCTGGCG 
CTGGCCATCGCGGTGGCCATCTTCGCCTTCCACATGCCCGCCGACATGGCCTTCGCCGCCGCCGGCTACGGC 
TTCCTCTACGGTCTCTGGCCGATCGCCTGGATCATCGTCGCGGCGGTCTTCCTCTACAAACTGACGGTGAAG 
AGCGGCCAGTTCGAGGTGATCCGCAGCTCGGTGCTGTCGATTACCGGCGACCAGCGCCTGCAGGTACTGCTG 
ATCGGCTTCTCCTTCGGGGCCTTCCTCGAAGGCGCCGCCGGTTTCGGCGCGCCGGTGGCGATCACCGCCGCC 
CTGCTCGTCGGCCTCGGCTTCAATCCGCTCTACGCCGCCGGCCTGTGCCTGATCGCCAACACTGCGCCGGTG 
GCCTTCGGCGCACTGGGCATCCCGATCATCGTCGCCGGCCAGGTGACCGGCATCGACGCCTTCAAGATCGGC 
GCCATGACCGGCCGCCAACTGCCGTTCCTGTCGATCCTGGTACCGTTCTGGCTGGTGTTCATGATGGACGGC 
TGGCGCGGCATCCGCGAAACCTGGCCGGCCGCCATCGTCGCCGGCGGCAGCTTCGCCATCACTCAGTACCTG 
ACGTCCAACTTCATCGGCCCGGAGTTGCCGGACATCACCTCGGCGCTGGTCAGCCTGGTCTCCCTGACCCTG 
TTCCTCAAGGTCTGGCAGCCGCAGGGCGCCAGCGAAGCGCTCGCCGCCAGCGGCGGCGCGGCCGTGGCCGGT 
GGCGGCTACGGCGGGCAACGCAGCGTCGAACCGTCCGCCTACAGCTTCGGCGAGATCCTCAAGGCCTGGTCG 
CCGTTCCTGGTGCTCACCGTACTGGTGACCATCTGGACCCTGAAACCTTTCAAGGCCCTGTTCGCCCCGGGC 
GGCGAGCTCTACTGGCTGGTGTTCAACTTCGCCATCCCGCACCTCGACCAACTGGTGGTCAAGGGCGCGCCG 
ATCGCCACCAGCGCCACGCCGATCGCCGCGGTATTCAAGTTCGACCCGATCTCCGCCACCGGCACGGCGATC 
TTCCTCTCGGCGCTGGTATCGATGTTCATCCTGCGCATCGGAGCGAAAATTGGTATTACCACTTTCAAGGAA 
GTCCTGGTGGAGCTGAAGTGGCCGATCCTGTCCATCGGCATGGTCCTGGCCTTCGCCTTCGTCACCAACTAC 
TCGGGCATGTCCACCACCCTGGCCCTGGTCCTGGCCGGTACCGGCGCGGCGTTCCCGTTCTTCTCGCCGTTC 
CTCGGCTGGCTGGGGGTATTCCTGACCGGTTCGGATACGTCCTCCAACGCCCTGTTCAGCTCCCTGCAGTCG 
ACCACCGCGCACCAGATCGGAGTCAGCGACACCCTGCTGGTGGCCGCCAATACCAGCGGCGGCGTGACCGGC 
AAGATGATCTCCCCGCAATCCATCGCCGTGGCCTGTGCCGCGACCGGGATGGTCGGCAAGGAATCCGACCTG 
TTCCGCTTCACCCTGAAGCACAGCCTGATCTTCGCCGCGCTGGTCGGACTGATCACCCTGGCCCAGGCATAC 
CTATTCACCGGCATGCTGGTGCACTGA