ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6249

TrivialName: PA14_24360

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_24360

PAO1 Ortholog Locus:

Sequence Length: 2925

Protein Length: 974

Start: 2117776

Stop: 2120700

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAA80490.1| (U07788) serotype-1-specific antigen [Mannheimia haemolytica] Identities = 289/993 (29%), Positives = 442/993 (44%), Gaps = 104/993 (10%)

Sequence:

ATGTCGCGGACGACGCGTTGGAAGGATGTTCGAAAGTGCGGGATACGCACACTGGTGCCGCTGGGCGTTTCG
CTATCGCTGTCGCCCTGTGCGTTGGCCGAAGCCCGGTCCAGCGGCTGGGAGCAGGACTTCATCGGCGTGCCG
GTCGCGCGCGCGTTGGGCCTGACCGGCAAAGGCGTGGATGTCGGGGTGATCGATGGCGGTTTCCTTCCGCAG
CATCCGGCGTTCGCCGGCCAGGCGATCACTCCGCTGGCCAACCGAGTGGCCATCGACGGCGAGGAAGCGATC
GCCGATCCCTCCCGGCCGCTCTTCGATCGCGATGAGCAAAGCGGAGAAATCCAGGTCGCCAGCCATGGCGCG
AATGTCAGCGGAATCATCGCGGCCAGGCCGGAGGTCATTGCCGATTTCACCTATCGTGGTGGCGTGGCGCCG
AAGGTCGGGCTTTTCCAGACGCAAATCAGGCCCAGCGACGAAGCCGATGACGAGGATGCCGACATAGAGGAG
GAACAAGATGAAGCGGCGAGCCAGGCCAGCCTGCTGCAACCGGGCAGCGAGGAACTCGTCCATGGCGCCCTG
AGCACCCTCTACCGGGGCGCGCCGACGGTACGGATCATCAACAACAGCTACAACGACGATCCTATCGGCAAT
GACGCCGCCGCGGTGGATGCCGCTTATGCGGCGATCGATCCCGCAGCGCCGCATCCCTACCTGAATGCCCTG
GCCGACGGCGTGCGCGACGGGCGCCTGCTGGTGTTCGCAGCCGGCAACGAAAGCCGCGCGCAGCCCGGCTTG
CTCGCCACCTTGCCGCGCTTCATGCCCGGACTGGAAAGCGGTTTCCTCAGCGTGGTCGCGCTGGGTCCGGAC
CGCGACCTCACCGACTACTCCAACCAGTGCGGGGTGACGAAAGACTGGTGCCTGGCGGCGCCCGGCGACATG
TACGTGGCCGCGGCGAACGGTGCCTCGGCCGAACGCTTGACCTACACCTATGCCGACCAGAGCGGTACCTCC
TACGCCACGCCGCTAGTCAGCGCCAGCGCGGCATTGCTGGCCGAGCGTTTTCCCTACATGGACATGGCGCAG
GTGCGGATGACCATGTTGAGCACCGCCGTCGATCTTGGCGAGCCTGGGGTCGACGCGCGTTTCGGCTGGGGG
TTGCTGGACCTGGCCCGGGCGGTACGTGGACCAGGCCAGCTGTTCGGCGATCAGCGGGTGACGCTGGACGCG
GCGCGCGGCGGCTGGAATGCCAGGGATGCCTGGAACAACGACATCCGCGCCGGTGGCATGCTTGGCAAGGCC
GGCAGCGGCGCGCTGCGGCTGTCGGGCGATAACCGTTTCGCCGGGGTCGCGGTCGAGGCCGGCGAACTGGCG
CTCGCCGGGCGCAACCGGTTCTCTGCCGCCAGCGAGGTTCGCGGCGGGCGCCTGGTGGTGGACGGCACGCTC
GAAGGACCGGGGTTGAGGGTAGCCCGGGCCGGCGAGCTGGGCGGCGGCGGCACCATTGCCGCGCCGACCCGG
ATCGACGGTGTGCTCGCCGCCGACCGCCTCGCGGGCGCGCCGAGCTTCACCCGCTCGCTCGAACTGTCGCCG
TCGAGCACGACCCGGGTGGCGCTGGGCGGGCAACCGCCGATCCGCCTCGACGGCGCGGCTGCTTTCGCCCGG
TTGGGCGGGCGGCTGCAACTGACGGCGGCCGATGCGGCGGGGGCGGGGCAGAAGTTCCTGACGGTCGCGCGG
GGCGCCACCTACCAGGGCGGTTTCGATGCCTTGCAACAGGCGCCGGGCCTGGCCGCGCGGGGCCTGCGCCAC
GACTTGCGCTTCGCTGCGGATGGCATCGCCCTGGCCCTGGCTCCGCTCGACCTGCCGGGGCAGGTCAACCTA
CAAGGCAACGCCGGGCGTTCCGCGGCGGCGTTGAACGCGCTCCGTGACCGGCCCATCGCCCTGCGCCCCGGC
GCCTACAACGATTGGCTGCAGGCCAGCCTGGCGCGCGGCGATCTCGCTGGCCTGCCACGCAGCGCCGGCGGC
CAGGTGTATGCCGACAGCCTGGCCTACCTGAGTCGGCAGCCGTCGCAAGTGGATCGCGCGATGTTTGGCGAG
CTTTCCTGGGCGCAGCCCGGGCAGGCGCCGCGGTTGTGGTTCCAGGGGCTCGCTTCCGGCTTGCGCAACGAG
GGGCGCTCAGGCGTCAGCGGCAGTCGCGAGCGTAGCGACGGCATTGCCCTGGGCCTGGTCCAGGCGCTCGAC
GAACGAACCCAGGGCGGCGCGACGCTGGCGCAGACCAAGGGACGGATCAACAGCGCCGGCGGCAAGGTCGAG
CTGGACATCACCCAGCTCGCCGTGGGCTTGCTACACGCCTTCGACAGCCTGGAACAGGGCGGTTACGTCAGT
GCCATGCTCGGCGCCGGCTACCTCGACGCCGCCAGCAAGCGGCGCCTGCCGGGCTTTGCCACGGCCAAGGGC
GACAGCGAGGGCTGGCTCTACCACGCCAGCGTCAAGAGCGGCTACCGCTGGCGCAAGGACGATTGGCGGGTC
GAGCCGCGGGTCGGCCTGCTGGCGACCCGCACGGAATGGAAAGGTTTCCGCGAAAAGCACAGCGAGCTGGCG
CTGGACGTCGACCGCGCGGCCAGGGATGCGACCTTCGCCACCCTGGAACTGAGCGTCGCGCGCAGCCTGCGG
GTGGCCGACTGGTCGCTGGAGCCGGAGCTGAACCTGGGCTACGAGCGTGCCCTGGGAGTGCCGGCGAGCCAC
ACCGAGGCTAGCCTGCAGGGCGTCGACCTGAAGCAGGTTTCGGCCCATCGGGGGCGCGACCTGTTCAGTGCG
GGGATGGCGCTGCACGCCCGCCGCGGTCCGTTGCAGGGCAGCCTGGAGCTGCAGGGGACGAAAGGCGAGCGG
GTCGGCGGCAGCGCCGTCAACCTGCGCCTGAGCTACGACTTCTAG

Translation:

MSRTTRWKDVRKCGIRTLVPLGVSLSLSPCALAEARSSGWEQDFIGVPVARALGLTGKGVDVGVIDGGFLPQ
HPAFAGQAITPLANRVAIDGEEAIADPSRPLFDRDEQSGEIQVASHGANVSGIIAARPEVIADFTYRGGVAP
KVGLFQTQIRPSDEADDEDADIEEEQDEAASQASLLQPGSEELVHGALSTLYRGAPTVRIINNSYNDDPIGN
DAAAVDAAYAAIDPAAPHPYLNALADGVRDGRLLVFAAGNESRAQPGLLATLPRFMPGLESGFLSVVALGPD
RDLTDYSNQCGVTKDWCLAAPGDMYVAAANGASAERLTYTYADQSGTSYATPLVSASAALLAERFPYMDMAQ
VRMTMLSTAVDLGEPGVDARFGWGLLDLARAVRGPGQLFGDQRVTLDAARGGWNARDAWNNDIRAGGMLGKA
GSGALRLSGDNRFAGVAVEAGELALAGRNRFSAASEVRGGRLVVDGTLEGPGLRVARAGELGGGGTIAAPTR
IDGVLAADRLAGAPSFTRSLELSPSSTTRVALGGQPPIRLDGAAAFARLGGRLQLTAADAAGAGQKFLTVAR
GATYQGGFDALQQAPGLAARGLRHDLRFAADGIALALAPLDLPGQVNLQGNAGRSAAALNALRDRPIALRPG
AYNDWLQASLARGDLAGLPRSAGGQVYADSLAYLSRQPSQVDRAMFGELSWAQPGQAPRLWFQGLASGLRNE
GRSGVSGSRERSDGIALGLVQALDERTQGGATLAQTKGRINSAGGKVELDITQLAVGLLHAFDSLEQGGYVS
AMLGAGYLDAASKRRLPGFATAKGDSEGWLYHASVKSGYRWRKDDWRVEPRVGLLATRTEWKGFREKHSELA
LDVDRAARDATFATLELSVARSLRVADWSLEPELNLGYERALGVPASHTEASLQGVDLKQVSAHRGRDLFSA
GMALHARRGPLQGSLELQGTKGERVGGSAVNLRLSYDF*

AnnotationID:6250 GeneID:6249

AnnotatorUID: danlee

Modification Date/Time: 2005-10-13 15:03:43

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies): posttranslational modification, protein turnover, chaperones

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|507431|gb|AAA80490.1|  serotype-1-specific antigen
     Length=934
     Score =  344 bits (882),  Expect = 1e-92
     Identities = 289/993 (29%), Positives = 442/993 (44%), Gaps = 104/993 (10%)

gi|401120|sp|P31631|SSA1_PASHA  Serotype-specific antigen 1 precursor
gi|150518|gb|AAA25549.1|  serotype-1 specific antigen
     Length=932
     Score =  339 bits (869),  Expect = 4e-91
     Identities = 283/962 (29%), Positives = 430/962 (44%), Gaps = 104/962 (10%)

gi|46143226|ref|ZP_00135639.2|  COG1404: Subtilisin-like serine proteases [Actinobacillus pleuropneumoniae 
serovar 1 str. 4074]
     Length=932
     Score =  316 bits (810),  Expect = 2e-84
     Identities = 258/948 (27%), Positives = 413/948 (43%), Gaps = 94/948 (9%)

gi|71163522|gb|EAO13239.1|  Outer membrane autotransporter barrel [Xylella fastidiosa Dixon]
     Length=976
     Score =  231 bits (589),  Expect = 1e-58
     Identities = 254/881 (28%), Positives = 364/881 (41%), Gaps = 143/881 (16%)

Structural Features:

N-terminus:
pfam00082, Peptidase_S8, Subtilase family. Subtilases are a family of serine proteases. 
             CD-Length = 301 residues, 100.0% aligned
             Score = 82.4 bits (203), Expect = 2e-16

C-terminus:
pfam03797, Autotransporter, Autotransporter beta-domain. This family corresponds to the presumed integral
membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins
it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane.
             CD-Length = 287 residues,  83.6% aligned
             Score = 47.8 bits (113), Expect = 5e-06

Genomic Context:

Comment:

ReferenceID:12350

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29614

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32437

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6249_cdd.html

URL:

GC ORFID: `49251`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2836154`	Stop: `2833230`
Length: `2925`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGTCGCGGACGACGCGTTGGAAGGATGTTCGAAAGTGCGGGATACGCACACTGGTGCCGCTGGGCGTTTCG CTATCGCTGTCGCCCTGTGCGTTGGCCGAAGCCCGGTCCAGCGGCTGGGAGCAGGACTTCATCGGCGTGCCG GTCGCGCGCGCGTTGGGCCTGACCGGCAAAGGCGTGGATGTCGGGGTGATCGATGGCGGTTTCCTTCCGCAG CATCCGGCGTTCGCCGGCCAGGCGATCACTCCGCTGGCCAACCGAGTGGCCATCGACGGCGAGGAAGCGATC GCCGATCCCTCCCGGCCGCTCTTCGATCGCGATGAGCAAAGCGGAGAAATCCAGGTCGCCAGCCATGGCGCG AATGTCAGCGGAATCATCGCGGCCAGGCCGGAGGTCATTGCCGATTTCACCTATCGTGGTGGCGTGGCGCCG AAGGTCGGGCTTTTCCAGACGCAAATCAGGCCCAGCGACGAAGCCGATGACGAGGATGCCGACATAGAGGAG GAACAAGATGAAGCGGCGAGCCAGGCCAGCCTGCTGCAACCGGGCAGCGAGGAACTCGTCCATGGCGCCCTG AGCACCCTCTACCGGGGCGCGCCGACGGTACGGATCATCAACAACAGCTACAACGACGATCCTATCGGCAAT GACGCCGCCGCGGTGGATGCCGCTTATGCGGCGATCGATCCCGCAGCGCCGCATCCCTACCTGAATGCCCTG GCCGACGGCGTGCGCGACGGGCGCCTGCTGGTGTTCGCAGCCGGCAACGAAAGCCGCGCGCAGCCCGGCTTG CTCGCCACCTTGCCGCGCTTCATGCCCGGACTGGAAAGCGGTTTCCTCAGCGTGGTCGCGCTGGGTCCGGAC CGCGACCTCACCGACTACTCCAACCAGTGCGGGGTGACGAAAGACTGGTGCCTGGCGGCGCCCGGCGACATG TACGTGGCCGCGGCGAACGGTGCCTCGGCCGAACGCTTGACCTACACCTATGCCGACCAGAGCGGTACCTCC TACGCCACGCCGCTAGTCAGCGCCAGCGCGGCATTGCTGGCCGAGCGTTTTCCCTACATGGACATGGCGCAG GTGCGGATGACCATGTTGAGCACCGCCGTCGATCTTGGCGAGCCTGGGGTCGACGCGCGTTTCGGCTGGGGG TTGCTGGACCTGGCCCGGGCGGTACGTGGACCAGGCCAGCTGTTCGGCGATCAGCGGGTGACGCTGGACGCG GCGCGCGGCGGCTGGAATGCCAGGGATGCCTGGAACAACGACATCCGCGCCGGTGGCATGCTTGGCAAGGCC GGCAGCGGCGCGCTGCGGCTGTCGGGCGATAACCGTTTCGCCGGGGTCGCGGTCGAGGCCGGCGAACTGGCG CTCGCCGGGCGCAACCGGTTCTCTGCCGCCAGCGAGGTTCGCGGCGGGCGCCTGGTGGTGGACGGCACGCTC GAAGGACCGGGGTTGAGGGTAGCCCGGGCCGGCGAGCTGGGCGGCGGCGGCACCATTGCCGCGCCGACCCGG ATCGACGGTGTGCTCGCCGCCGACCGCCTCGCGGGCGCGCCGAGCTTCACCCGCTCGCTCGAACTGTCGCCG TCGAGCACGACCCGGGTGGCGCTGGGCGGGCAACCGCCGATCCGCCTCGACGGCGCGGCTGCTTTCGCCCGG TTGGGCGGGCGGCTGCAACTGACGGCGGCCGATGCGGCGGGGGCGGGGCAGAAGTTCCTGACGGTCGCGCGG GGCGCCACCTACCAGGGCGGTTTCGATGCCTTGCAACAGGCGCCGGGCCTGGCCGCGCGGGGCCTGCGCCAC GACTTGCGCTTCGCTGCGGATGGCATCGCCCTGGCCCTGGCTCCGCTCGACCTGCCGGGGCAGGTCAACCTA CAAGGCAACGCCGGGCGTTCCGCGGCGGCGTTGAACGCGCTCCGTGACCGGCCCATCGCCCTGCGCCCCGGC GCCTACAACGATTGGCTGCAGGCCAGCCTGGCGCGCGGCGATCTCGCTGGCCTGCCACGCAGCGCCGGCGGC CAGGTGTATGCCGACAGCCTGGCCTACCTGAGTCGGCAGCCGTCGCAAGTGGATCGCGCGATGTTTGGCGAG CTTTCCTGGGCGCAGCCCGGGCAGGCGCCGCGGTTGTGGTTCCAGGGGCTCGCTTCCGGCTTGCGCAACGAG GGGCGCTCAGGCGTCAGCGGCAGTCGCGAGCGTAGCGACGGCATTGCCCTGGGCCTGGTCCAGGCGCTCGAC GAACGAACCCAGGGCGGCGCGACGCTGGCGCAGACCAAGGGACGGATCAACAGCGCCGGCGGCAAGGTCGAG CTGGACATCACCCAGCTCGCCGTGGGCTTGCTACACGCCTTCGACAGCCTGGAACAGGGCGGTTACGTCAGT GCCATGCTCGGCGCCGGCTACCTCGACGCCGCCAGCAAGCGGCGCCTGCCGGGCTTTGCCACGGCCAAGGGC GACAGCGAGGGCTGGCTCTACCACGCCAGCGTCAAGAGCGGCTACCGCTGGCGCAAGGACGATTGGCGGGTC GAGCCGCGGGTCGGCCTGCTGGCGACCCGCACGGAATGGAAAGGTTTCCGCGAAAAGCACAGCGAGCTGGCG CTGGACGTCGACCGCGCGGCCAGGGATGCGACCTTCGCCACCCTGGAACTGAGCGTCGCGCGCAGCCTGCGG GTGGCCGACTGGTCGCTGGAGCCGGAGCTGAACCTGGGCTACGAGCGTGCCCTGGGAGTGCCGGCGAGCCAC ACCGAGGCTAGCCTGCAGGGCGTCGACCTGAAGCAGGTTTCGGCCCATCGGGGGCGCGACCTGTTCAGTGCG GGGATGGCGCTGCACGCCCGCCGCGGTCCGTTGCAGGGCAGCCTGGAGCTGCAGGGGACGAAAGGCGAGCGG GTCGGCGGCAGCGCCGTCAACCTGCGCCTGAGCTACGACTTCTAG