ViewGene
Locus Name:
GeneID:
Location:

GeneID:624
TrivialName: PA14_09320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09320
PAO1 Ortholog Locus:PA4222
Sequence Length:1725
Protein Length:574
Start: 798202
Stop: 799926
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07610.1|AE004839_3 (AE004839) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 567/574 (98%), Positives = 570/574 (99%)
Sequence:
ATGACCCTGTTCGAACGAATGCGTGCGCTGCCCGAAGACTGCCGTGCCGCGTTGCGCCGGGCGAGCGCTTGG
GCGGTCCTGGCGGCGCTGCTGGACGCCGCTTGCGGCGTATTGCTGGTGCCGTTGGTCGAGGCCTGGTTCGCC
GAAGGCGCGTTGCCCTGGCGCTGGGTCGCCGCGTTGCTCGGCTTGAGCCTGGCGCAGGCGCTGTTGCAGTAC
CTGGCCCTGCGTCGCGGTTTCGCCGCCGGCGGCTCGCTGGCGGCTGGACTGGTGCGCAGCCTGGTGGCGCGC
TTGCCGCGCCTGGCGCCGCCGGCGCTGCGCCGGGTCGCGCCGGCCGAAGGCCTGCTGCGCGGCCCGGTGATG
CAGGCGATGGGCATTCCGGCGCACCTGCTGGGGCCGCTGATCGCCGCGATGGTGACGCCGCTCGGGGTGATC
CTCGGGCTGTTCCTGATCGACCCGTCCATCGCCCTCGGCCTGCTCGTCGCCGGTGCCGTCCTCGCCGCGCTG
TTGCGCTGGAGCGGGCGGCGCAATCTGGCGGCGGAGGATGCCCGGCTGGCCGCCGAGCGCGACGCCGCACGG
CAGTTGCAGGCGTTCGCCGAACGCCAGCCGCTGCTGCGCGCGGCGCAGCGCGAAAGCGTCGCCCGCCAGGGG
CTGGAAGAGGCCTTGCGCAGTCTCCACCGCAGCACCCTGGAACTGTTGCGGCGCAGCCTGCCCAGCGGCCTC
GGCTTCGCCCTGGCGGTGCAGGCGGCGTTCGCCTTCGCCCTGCTCGGCGGCGCCTGGGCGGTGGAGCGGCAA
TGGCTGGACGGCGCGCGGCTGGTGGCCGTGCTGGTGCTGCTGGTGCGCTTCATCGAGCCGCTGGCCCAGCTC
ACCCATCTCGACCAGGCGTTGCGCGGCGCCTGGCAGGCGCTGGACACCCTGCTGCGGGTTTTCGCCCTGGCT
CCGCTGCACAGCCCCGAGCCGGGCGAGCGGCCGCACGACGCCAGCCTGGCGGCCGAGGCCGTGGAATTGCGC
CTGGAAGATGGCCGCGCCTTGCTCGAGGACATTTCCCTGAGGCTGGAGCCGGGTTCGCTGAACGTCCTCGTC
GGACCCTCCGGGGCCGGCAAGAGCAGCCTGCTGGCGCTGCTCGGGCGGCTCTACGACGTCGATGCCGGGCGT
GTCCTGCTGGGTGGCGTGGATATCCGCCGGTTGAGCGAAACGACCCTCGCCGCCAGTCGCAACCTGGTGTTC
CAGGACAACGGCCTGTTCCGCGGCAGCGTTGCCTGGAACCTGCGCATGGCGCGAGCGGACGCCGATCTCGAA
GCGCTGCGCGAGGCGGCGCGGGCGGTTGGCCTGCTGGAAGAGATCGAGGCCTGGCCGCAGGGCTGGGACAGC
GATGTCGGTCCCGGCGGCGCGCTGCTGTCCGGCGGCCAGCGGCAACGCCTGTGCCTGGCTCGCGGGCTGCTC
TCGACGGCGCCGTTGCTGCTGCTCGACGAGCCCACCGCCAGCCTCGACGCCGCCAGCGAGGCGCAGGTGCTG
CGCAGCCTGCTCGGGTTGCGCGGCCGGCGCACCCTGCTGGTAGTGACCCACCGCCCGGCGCTGGCGCGTCAG
GCCGACCAGGTACTGCTGCTGGAGGAGGGGCGCCTGTGCCTCAGCGGACGTCACGCCGATCTGCTCGTCCGG
GACGACTGGTATGCCGGTTTCGTCGGGCTGGCGGGCGAGGAAAGTTCCGCGACGGTCGTGGATCGATAG
Translation:
MTLFERMRALPEDCRAALRRASAWAVLAALLDAACGVLLVPLVEAWFAEGALPWRWVAALLGLSLAQALLQY
LALRRGFAAGGSLAAGLVRSLVARLPRLAPPALRRVAPAEGLLRGPVMQAMGIPAHLLGPLIAAMVTPLGVI
LGLFLIDPSIALGLLVAGAVLAALLRWSGRRNLAAEDARLAAERDAARQLQAFAERQPLLRAAQRESVARQG
LEEALRSLHRSTLELLRRSLPSGLGFALAVQAAFAFALLGGAWAVERQWLDGARLVAVLVLLVRFIEPLAQL
THLDQALRGAWQALDTLLRVFALAPLHSPEPGERPHDASLAAEAVELRLEDGRALLEDISLRLEPGSLNVLV
GPSGAGKSSLLALLGRLYDVDAGRVLLGGVDIRRLSETTLAASRNLVFQDNGLFRGSVAWNLRMARADADLE
ALREAARAVGLLEEIEAWPQGWDSDVGPGGALLSGGQRQRLCLARGLLSTAPLLLLDEPTASLDAASEAQVL
RSLLGLRGRRTLLVVTHRPALARQADQVLLLEEGRLCLSGRHADLLVRDDWYAGFVGLAGEESSATVVDR*
AnnotationID:633GeneID:624
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 07:07:56
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:pchI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1132,COG4988,COG4987
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC17507.1| (AL939132) putative ABC transporter ATP-binding protein
           [Streptomyces coelicolor A3(2)]
          Length = 587

 Score =  307 bits (787), Expect = 1e-82
 Identities = 216/571 (37%), Positives = 296/571 (51%), Gaps = 33/571 (5%)

>gb|AAN68203.1|AE016453_6 (AE016783) ABC transporter, permease/ATP-binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 601

 Score =  269 bits (688), Expect = 3e-71
 Identities = 188/547 (34%), Positives = 290/547 (53%), Gaps = 39/547 (7%)






 
Structural Features:
COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components 
[Defense mechanisms]
CD-Length = 567 residues,  95.9% aligned
Score =  285 bits (731), Expect = 7e-78
Identities = 162/544 (29%), Positives = 257/544 (47%), Gaps = 3/544 (0%)

COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, 
ATPase and permease components 
[Energy production and conversion / 
Posttranslational modification, protein turnover, chaperones]
CD-Length = 559 residues,  98.0% aligned
Score =  217 bits (554), Expect = 3e-57
Identities = 165/557 (29%), Positives = 251/557 (45%), Gaps = 26/557 (4%)

COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, 
fused ATPase and permease components 
[Energy production and conversion / 
Posttranslational modification, protein turnover, chaperones]
CD-Length = 573 residues,  88.3% aligned
Score =  210 bits (535), Expect = 5e-55
Identities = 146/508 (28%), Positives = 224/508 (44%), Gaps = 10/508 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1251




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18393




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36912




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:624_cdd.html


    		




 
URL:

















    ReferenceID:37012




  
Author/Investigator(s):
        Reimmann C, Patel HM, Serino L, Barone M, Walsh CT, Haas D.





  
Title:
        Essential PchG-dependent reduction in pyochelin biosynthesis of Pseudomonas aeruginosa.




  
PubMed:
        11208777


MedLine:
        




    
Source:
J Bacteriol. 2001 Feb;183(3):813-20.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11208777









           
Homologs By Global Alignment 

           

       



     
Gene ID:624
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1059
                           PA4222_tr
                           translation of PA4222
                           574
                           98.78
                           99.30
                           0
                           2794.0
     

     
     
40831
                           gb|AAG07610.1|AE004839_3
                           (AE004839) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           574
                           98.78
                           99.30
                           0
                           2794.0
     

     
     
40832
                           gb|AAK01462.1|
                           (AF074705) ABC transporter [Pseudomonas aeruginosa]
                           574
                           98.60
                           99.30
                           0
                           2791.0
     

     
     
40836
                           gb|AAN67732.1|AE016404_7
                           (AE016782) ABC efflux transporter, permease/ATP-binding protein, putative [Pseudomonas putida KT2440]
                           658
                           28.87
                           41.03
                           155
                           464.0
     

     
     
40840
                           dbj|BAC46586.1|
                           (AP005939) beta-1,2-glucan export ATP-binding protein [Bradyrhizobium japonicum USDA 110]
                           651
                           27.64
                           41.32
                           126
                           431.0
     

     






      

          
GC ORFID: 43626How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4222Glimmer Score: 

          
Start: 4155735Stop: 4154011

          
Length: 1725


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4222 translation of PA4222Homolog Bit Score 1080.0

          
Other Homologs:  t_PA4222 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTGTTCGAACGAATGCGTGCGCTGCCCGAAGACTGCCGTGCCGCGTTGCGCCGGGCGAGCGCTTGG 
GCGGTCCTGGCGGCGCTGCTGGACGCCGCTTGCGGCGTATTGCTGGTGCCGTTGGTCGAGGCCTGGTTCGCC 
GAAGGCGCGTTGCCCTGGCGCTGGGTCGCCGCGTTGCTCGGCTTGAGCCTGGCGCAGGCGCTGTTGCAGTAC 
CTGGCCCTGCGTCGCGGTTTCGCCGCCGGCGGCTCGCTGGCGGCTGGACTGGTGCGCAGCCTGGTGGCGCGC 
TTGCCGCGCCTGGCGCCGCCGGCGCTGCGCCGGGTCGCGCCGGCCGAAGGCCTGCTGCGCGGCCCGGTGATG 
CAGGCGATGGGCATTCCGGCGCACCTGCTGGGGCCGCTGATCGCCGCGATGGTGACGCCGCTCGGGGTGATC 
CTCGGGCTGTTCCTGATCGACCCGTCCATCGCCCTCGGCCTGCTCGTCGCCGGTGCCGTCCTCGCCGCGCTG 
TTGCGCTGGAGCGGGCGGCGCAATCTGGCGGCGGAGGATGCCCGGCTGGCCGCCGAGCGCGACGCCGCACGG 
CAGTTGCAGGCGTTCGCCGAACGCCAGCCGCTGCTGCGCGCGGCGCAGCGCGAAAGCGTCGCCCGCCAGGGG 
CTGGAAGAGGCCTTGCGCAGTCTCCACCGCAGCACCCTGGAACTGTTGCGGCGCAGCCTGCCCAGCGGCCTC 
GGCTTCGCCCTGGCGGTGCAGGCGGCGTTCGCCTTCGCCCTGCTCGGCGGCGCCTGGGCGGTGGAGCGGCAA 
TGGCTGGACGGCGCGCGGCTGGTGGCCGTGCTGGTGCTGCTGGTGCGCTTCATCGAGCCGCTGGCCCAGCTC 
ACCCATCTCGACCAGGCGTTGCGCGGCGCCTGGCAGGCGCTGGACACCCTGCTGCGGGTTTTCGCCCTGGCT 
CCGCTGCACAGCCCCGAGCCGGGCGAGCGGCCGCACGACGCCAGCCTGGCGGCCGAGGCCGTGGAATTGCGC 
CTGGAAGATGGCCGCGCCTTGCTCGAGGACATTTCCCTGAGGCTGGAGCCGGGTTCGCTGAACGTCCTCGTC 
GGACCCTCCGGGGCCGGCAAGAGCAGCCTGCTGGCGCTGCTCGGGCGGCTCTACGACGTCGATGCCGGGCGT 
GTCCTGCTGGGTGGCGTGGATATCCGCCGGTTGAGCGAAACGACCCTCGCCGCCAGTCGCAACCTGGTGTTC 
CAGGACAACGGCCTGTTCCGCGGCAGCGTTGCCTGGAACCTGCGCATGGCGCGAGCGGACGCCGATCTCGAA 
GCGCTGCGCGAGGCGGCGCGGGCGGTTGGCCTGCTGGAAGAGATCGAGGCCTGGCCGCAGGGCTGGGACAGC 
GATGTCGGTCCCGGCGGCGCGCTGCTGTCCGGCGGCCAGCGGCAACGCCTGTGCCTGGCTCGCGGGCTGCTC 
TCGACGGCGCCGTTGCTGCTGCTCGACGAGCCCACCGCCAGCCTCGACGCCGCCAGCGAGGCGCAGGTGCTG 
CGCAGCCTGCTCGGGTTGCGCGGCCGGCGCACCCTGCTGGTAGTGACCCACCGCCCGGCGCTGGCGCGTCAG 
GCCGACCAGGTACTGCTGCTGGAGGAGGGGCGCCTGTGCCTCAGCGGACGTCACGCCGATCTGCTCGTCCGG 
GACGACTGGTATGCCGGTTTCGTCGGGCTGGCGGGCGAGGAAAGTTCCGCGACGGTCGTGGATCGATAG