ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6237

TrivialName: PA14_24950

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_24950

PAO1 Ortholog Locus:

Sequence Length: 1386

Protein Length: 461

Start: 2180121

Stop: 2181506

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06413.1|AE004727_9 (AE004727) probable FAD-dependent glycerol-3-phosphate dehydrogenase [Pseudomonas aeruginosa PAO1] Identities = 457/461 (99%), Positives = 458/461 (99%)

Sequence:

ATGGTCCATGGCGGCCTGCGCTACATCGCCAAGGGTCAGTGGCGGCTGACCCGCGACTCGGTGCGCGAGCGC
CAGCGGCTGCTCGGCGAGGCGCCTGGGCTGGTAGAGCCGTTGAGCTTCGTGATGGCCCACTACCGCGGCGGC
TTTCCCGGCCCGCGGCTATTCGGCGGCCTGCTGAGCGTCTACGACGCCCTTGCCGGGCGGCGCAACCACCGT
TTCTACGACGCCGCCACGTTGCGCTACCTGGCGCCGGGCCTGAAGGAACAACGGCTGCTCGGCGGCACGCGA
TTCTTCGATGCGGTGACCGACGATGCGCGCCTGGTGCTGCGGGTGCTGGCCGAGGCGCGTCACGACGGCGGC
GAGGCATTCAACGGCATGCGTGTGCGCGAATTGCTGCGCGAGGGCGGCCAGGTGGTCGGCCTGCGCGCCGAG
GACCGCGAGAGCGGCGAGCTTCTCGACTTTCGCTGCCGTGCCCTGGCGGTGGCCACCGGGGCCTGGGCCGAT
GAGTTGCGCCAGCCCGGCGGAAGCGAGCACATCCGCCCGCTGCGCGGTAGCCATCTATTGCTGCCGGCCTGG
CGCCTGCCGGTTGCCCATGCCTTCAGCTTCATGCACGCCACGGACCGGCGACCGGTGTTCGTGTTCCCCTGG
GAGGGCGCGACGGTGGTCGGCACCACCGATCTCGACCATCGCGACGGCCTTGGGGAGGACGCGCGGATCAGC
CGCGCCGAACTCGACTACCTGCTGGCGGCCTGCGCCCAGCAGTTTCCCGCCGCTGCCATCGAGGCGTGCGAC
GTGCTGTCTACCTGGGCCGGCGTGCGACCGGTGGTCAGCAGCGGCGACGACAGCGGCAAGCCTTCCGACGAG
AAACGCGAGCATGTGCTCTGGCGCGAGCCGGGCTGCGTGACCCTGGCCGGCGGCAAGCTGACCACCTTCCGG
CCGCTGGCGGTGGAGGTGCTACAAGCCTGCGCGCCGCTGCTCGGGCGCACGGTCACGGACGATGGCGCGGCG
GTGTTCGGCGCCTGCGAAGGCCCGCTCATCGACGGGCTCGGCAGCGGCCAGCGACGCCGCCTGGCCGGTCGC
TACGGACGCGACCTGGTCCGCCTCAAGCGGCTGGTGGACACCCTCGGAACGGACTGCGTGGGTGCCAGCGAA
ACGCTATGGGCCGAACTGGCGTTCGCCGCCGAGGCGGAAATGGTGCTGCATCTCGACGACCTGCTGTTGCGC
CGCACCCGCCTCGGCCTGCTGTTGCCCGGAGGCGGCGCGGCATACCTGCCGCGTATCCGCGCACTCTGCCAA
GCGCGCCTGGGCTGGGACGACCCGCGCTGGGAACGTGAGCAACAGGCCTATCTGGACCTCTGGCGCCGGCAC
TACAGCCTGCCCGTCTGA

Translation:

MVHGGLRYIAKGQWRLTRDSVRERQRLLGEAPGLVEPLSFVMAHYRGGFPGPRLFGGLLSVYDALAGRRNHR
FYDAATLRYLAPGLKEQRLLGGTRFFDAVTDDARLVLRVLAEARHDGGEAFNGMRVRELLREGGQVVGLRAE
DRESGELLDFRCRALAVATGAWADELRQPGGSEHIRPLRGSHLLLPAWRLPVAHAFSFMHATDRRPVFVFPW
EGATVVGTTDLDHRDGLGEDARISRAELDYLLAACAQQFPAAAIEACDVLSTWAGVRPVVSSGDDSGKPSDE
KREHVLWREPGCVTLAGGKLTTFRPLAVEVLQACAPLLGRTVTDDGAAVFGACEGPLIDGLGSGQRRRLAGR
YGRDLVRLKRLVDTLGTDCVGASETLWAELAFAAEAEMVLHLDDLLLRRTRLGLLLPGGGAAYLPRIRALCQ
ARLGWDDPRWEREQQAYLDLWRRHYSLPV*

AnnotationID:6238 GeneID:6237

AnnotatorUID: diggins

Modification Date/Time: 2004-11-27 13:01:02

Gene Name:

Confidence Code: 3

GeneProduct: putative glycerol-3-phosphate dehydrogenase

Cell Localization: ()

Synonyms: glpD2

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (12) Energy metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0578

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG0578, GlpA, Glycerol-3-phosphate dehydrogenase 
[Energy production and conversion]

Genomic Context:

Comment:

ReferenceID:12326

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29591

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36028

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6237_cdd.html

URL:

Homologs By Global Alignment

Gene ID:6237

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

7958 PA3025_tr translation of PA3025 526 86.88 87.07 65 2399.0

198661 gb|AAG06413.1|AE004727_9 (AE004727) probable FAD-dependent glycerol-3-phosphate dehydrogenase [Pseudomonas aeruginosa PAO1] 526 86.88 87.07 65 2399.0

GC ORFID: `49239`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2773806`	Stop: `2772421`
Length: `1386`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3025 translation of PA3025`	Homolog Bit Score `928.0`
Other Homologs: `t_PA3025 translation of PA3025 (BLASTP 928)`
GC ORF Sequence
ATGGTCCATGGCGGCCTGCGCTACATCGCCAAGGGTCAGTGGCGGCTGACCCGCGACTCGGTGCGCGAGCGC CAGCGGCTGCTCGGCGAGGCGCCTGGGCTGGTAGAGCCGTTGAGCTTCGTGATGGCCCACTACCGCGGCGGC TTTCCCGGCCCGCGGCTATTCGGCGGCCTGCTGAGCGTCTACGACGCCCTTGCCGGGCGGCGCAACCACCGT TTCTACGACGCCGCCACGTTGCGCTACCTGGCGCCGGGCCTGAAGGAACAACGGCTGCTCGGCGGCACGCGA TTCTTCGATGCGGTGACCGACGATGCGCGCCTGGTGCTGCGGGTGCTGGCCGAGGCGCGTCACGACGGCGGC GAGGCATTCAACGGCATGCGTGTGCGCGAATTGCTGCGCGAGGGCGGCCAGGTGGTCGGCCTGCGCGCCGAG GACCGCGAGAGCGGCGAGCTTCTCGACTTTCGCTGCCGTGCCCTGGCGGTGGCCACCGGGGCCTGGGCCGAT GAGTTGCGCCAGCCCGGCGGAAGCGAGCACATCCGCCCGCTGCGCGGTAGCCATCTATTGCTGCCGGCCTGG CGCCTGCCGGTTGCCCATGCCTTCAGCTTCATGCACGCCACGGACCGGCGACCGGTGTTCGTGTTCCCCTGG GAGGGCGCGACGGTGGTCGGCACCACCGATCTCGACCATCGCGACGGCCTTGGGGAGGACGCGCGGATCAGC CGCGCCGAACTCGACTACCTGCTGGCGGCCTGCGCCCAGCAGTTTCCCGCCGCTGCCATCGAGGCGTGCGAC GTGCTGTCTACCTGGGCCGGCGTGCGACCGGTGGTCAGCAGCGGCGACGACAGCGGCAAGCCTTCCGACGAG AAACGCGAGCATGTGCTCTGGCGCGAGCCGGGCTGCGTGACCCTGGCCGGCGGCAAGCTGACCACCTTCCGG CCGCTGGCGGTGGAGGTGCTACAAGCCTGCGCGCCGCTGCTCGGGCGCACGGTCACGGACGATGGCGCGGCG GTGTTCGGCGCCTGCGAAGGCCCGCTCATCGACGGGCTCGGCAGCGGCCAGCGACGCCGCCTGGCCGGTCGC TACGGACGCGACCTGGTCCGCCTCAAGCGGCTGGTGGACACCCTCGGAACGGACTGCGTGGGTGCCAGCGAA ACGCTATGGGCCGAACTGGCGTTCGCCGCCGAGGCGGAAATGGTGCTGCATCTCGACGACCTGCTGTTGCGC CGCACCCGCCTCGGCCTGCTGTTGCCCGGAGGCGGCGCGGCATACCTGCCGCGTATCCGCGCACTCTGCCAA GCGCGCCTGGGCTGGGACGACCCGCGCTGGGAACGTGAGCAACAGGCCTATCTGGACCTCTGGCGCCGGCAC TACAGCCTGCCCGTCTGA