ViewGene

Locus Name:
GeneID:
Location:

GeneID:623
TrivialName: PA14_41520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41520
PAO1 Ortholog Locus:PA1782
Sequence Length:1602
Protein Length:533
Start: 3704178
Stop: 3705779
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05171.1|AE004604_1 (AE004604) probable serine/threonine-protein kinase [Pseudomonas aeruginosa PAO1]
Identities = 528/531 (99%), Positives = 529/531 (99%)
Sequence:
CTGCGGGTAGTCACCCCGGCGCCGGCCCTGGCCGCCAGCAAGGGACACCTGCTGGCCATCGCCGACGGTGTC
AGCCAGTGCGCCGATGGCGGCCTGGCGGCGCGCAGCAGCCTGCAAGCGCTGGCCCTGGATTACTATGCGACT
CCGGAAACCTGGGCCATCGTGCAGTCCCTGGACCGCCTGCTGCTGGCGCAGAACCGCTGGCTACAGGCCAAT
GGCGGCGGCCAGCCGCTGCTCACCACCCTCACCGCCCTGGTGCTGCGCGGCACCCGCTACACCCTGGCCCAT
GTCGGCGATTGCCGGGCCTACCTGTGGCGCGACGGCGAGTTGCTCCGGCAGACCAGCGACCACGTCTGGGAA
CAGCCGCACATGCAACACGTGCTGACCCGCGCCCTGGGACTGGACCAGCATCTGGTGGTCGACTATCTGGAA
GGCGATCTGGAGCCCGGCAGCCAGTGGCTACTGGTCAGCGACGGCGTCTGGGCGACGCTGGGCGACAGCGGC
ATCCGCAGCATCCTGCGCAACGCCGAAGAGCCGCAGCGCAGCGCCGAGGCTCTGGTTCGCGCCGCCCACCTG
GCAGGCAGCCAGGACAACGCCAGCGCCCTGCTGGTGCGCGTGGAAGCCGTGCCCGCAGGCAGCCTCGGCGAC
GCCCTCGCGCAACTGGGCCACTGGCCACTGCCGCCACCGCTGAAGCCCGACCAGCTCTTCGAAGGCTGGCGG
GTCCGGCAGTTGCTCGGCGAATCCCGCCAGTCCCTGCTCTACCGGGTCGAGGATGGCCAGGGCCAACCCTGG
CTGCTGAAGACCCTTCCCGCCGCACGTGCCGACGATCCGCTGGCAACCCAGGCCCTGCTGCTCGAGGAATGG
TTCCTGCGCCGCGTCCAGGGCCGGCATTTCCCCGAGCTGCACGGATTGGCGCAACGCCAGCATCTGTATTAC
CTGATGCGCGAGCACCCCGGAGAGACTCTCGCCGAGCGCTTGCGCAACCATGGCCCGCTGTCGCTGCCGGAG
TGGCTGGGGCTGGCCAACCAGCTGCTGCGCGGGCTTGGCCAGTTGCATCGACGCAACCTGCTGCACCGCGAC
CTCAAGCCGGAAAATCTCCACCTCGGCCGCGACGGCGAGCTGCGCCTGCTGGATTTCGGCCTGGCCTGGTGT
CCGGGATTGTCGCACGAAGACCCCCATCTGCTACCGGGTACGCCCAGCTACCTGGCGCCGGAGTGCTTCTCC
GGCACCTCGCCCTCGGTGCGCCAGGATCTCTACGCCACCGGCGTCTGCCTCTACCAGGCGCTGACCGGGCGC
TATCCCTATGGCGAGATCGAAGCCTTCCAGCACCCGCGCTTCGGTCGCCCCGTCCCGCCCAGCCGCTATCGC
CCCGACCTGCCGGCCTGGATCGACGACCTGCTGCTGCGCGCCGTCGCCTGCGACCCCGCACAGCGCTTCGAG
ACCGCCGAGGAATGGCTGCTCTCGCTGCAACAGGGAGAAGCGTTGCCGGCCGCGGCACCCCGCCCATTGCTG
GAGCGCGAACCGCTGCAGACCTGGCGCGCCATCGCCCTGCTGTCCCTGGCCGCCAACCTGGCGCTACTCCTG
GTCTGGCTGAAGGGCTGA
Translation:
MRVVTPAPALAASKGHLLAIADGVSQCADGGLAARSSLQALALDYYATPETWAIVQSLDRLLLAQNRWLQAN
GGGQPLLTTLTALVLRGTRYTLAHVGDCRAYLWRDGELLRQTSDHVWEQPHMQHVLTRALGLDQHLVVDYLE
GDLEPGSQWLLVSDGVWATLGDSGIRSILRNAEEPQRSAEALVRAAHLAGSQDNASALLVRVEAVPAGSLGD
ALAQLGHWPLPPPLKPDQLFEGWRVRQLLGESRQSLLYRVEDGQGQPWLLKTLPAARADDPLATQALLLEEW
FLRRVQGRHFPELHGLAQRQHLYYLMREHPGETLAERLRNHGPLSLPEWLGLANQLLRGLGQLHRRNLLHRD
LKPENLHLGRDGELRLLDFGLAWCPGLSHEDPHLLPGTPSYLAPECFSGTSPSVRQDLYATGVCLYQALTGR
YPYGEIEAFQHPRFGRPVPPSRYRPDLPAWIDDLLLRAVACDPAQRFETAEEWLLSLQQGEALPAAAPRPLL
EREPLQTWRAIALLSLAANLALLLVWLKG*
AnnotationID:632GeneID:623
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 12:12:04
Gene Name:
Confidence Code:3
GeneProduct:putative serine/threonine-protein kinase
Cell Localization:()
Synonyms:ppkB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0631,cd00180,smart00220
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67705.1|AE016401_8 (AE016781) serine/threonine-protein kinase, putative [Pseudomonas
           putida KT2440]
          Length = 556

 Score =  751 bits (1939), Expect = 0.0
 Identities = 364/535 (68%), Positives = 430/535 (80%), Gaps = 3/535 (0%)

>gb|AAO55817.1| (AE016864) serine/threonine protein kinase, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 529

 Score =  709 bits (1831), Expect = 0.0
 Identities = 351/532 (65%), Positives = 412/532 (77%), Gaps = 6/532 (1%)

Structural Features:
COG0631, PTC1, Serine/threonine protein phosphatase 
[Signal transduction mechanisms]
CD-Length = 262 residues,  83.6% aligned
Score =  165 bits (420), Expect = 1e-41
Identities = 77/219 (35%), Positives = 110/219 (50%), Gaps = 22/219 (10%)

cd00180, S_TKc, Serine/Threonine protein kinases, catalytic domain. 
CD-Length = 256 residues,  96.9% aligned
Score =  140 bits (355), Expect = 3e-34
Identities = 73/251 (29%), Positives = 120/251 (47%), Gaps = 8/251 (3%)

smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain
CD-Length = 256 residues,  97.3% aligned
Score =  134 bits (340), Expect = 2e-32
Identities = 71/252 (28%), Positives = 113/252 (44%), Gaps = 9/252 (3%)
Genomic Context:
Comment:
ReferenceID:14183
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18391
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37123
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:623_cdd.html
URL:
Homologs By Global Alignment
Gene ID:623

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1058 PA1782_tr translation of PA1782 533 99.24 99.24 2 2792.0
40827 gb|AAG05171.1|AE004604_1 (AE004604) probable serine/threonine-protein kinase [Pseudomonas aeruginosa PAO1] 533 99.06 99.24 2 2789.0
40828 gb|AAD22550.1|AF112870_2 (AF112870) protein kinase B [Pseudomonas aeruginosa] 533 98.68 98.87 2 2785.0
40829 gb|AAN67705.1|AE016401_8 (AE016781) serine/threonine-protein kinase, putative [Pseudomonas putida KT2440] 557 65.52 77.19 25 1945.0
40830 gb|AAO55817.1| (AE016864) serine/threonine protein kinase, putative [Pseudomonas syringae pv. tomato str. DC3000] 536 65.48 76.86 10 1838.0
GC ORFID: 43625How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1782Glimmer Score:
Start: 1249731Stop: 1248130
Length: 1602
Start Codon: CTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1782 translation of PA1782Homolog Bit Score 1080.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene366 (ORF: BLASTX 736.0), t_PA1782 (ORF: GLIMMER)
GC ORF Sequence
CTGCGGGTAGTCACCCCGGCGCCGGCCCTGGCCGCCAGCAAGGGACACCTGCTGGCCATCGCCGACGGTGTC
AGCCAGTGCGCCGATGGCGGCCTGGCGGCGCGCAGCAGCCTGCAAGCGCTGGCCCTGGATTACTATGCGACT
CCGGAAACCTGGGCCATCGTGCAGTCCCTGGACCGCCTGCTGCTGGCGCAGAACCGCTGGCTACAGGCCAAT
GGCGGCGGCCAGCCGCTGCTCACCACCCTCACCGCCCTGGTGCTGCGCGGCACCCGCTACACCCTGGCCCAT
GTCGGCGATTGCCGGGCCTACCTGTGGCGCGACGGCGAGTTGCTCCGGCAGACCAGCGACCACGTCTGGGAA
CAGCCGCACATGCAACACGTGCTGACCCGCGCCCTGGGACTGGACCAGCATCTGGTGGTCGACTATCTGGAA
GGCGATCTGGAGCCCGGCAGCCAGTGGCTACTGGTCAGCGACGGCGTCTGGGCGACGCTGGGCGACAGCGGC
ATCCGCAGCATCCTGCGCAACGCCGAAGAGCCGCAGCGCAGCGCCGAGGCTCTGGTTCGCGCCGCCCACCTG
GCAGGCAGCCAGGACAACGCCAGCGCCCTGCTGGTGCGCGTGGAAGCCGTGCCCGCAGGCAGCCTCGGCGAC
GCCCTCGCGCAACTGGGCCACTGGCCACTGCCGCCACCGCTGAAGCCCGACCAGCTCTTCGAAGGCTGGCGG
GTCCGGCAGTTGCTCGGCGAATCCCGCCAGTCCCTGCTCTACCGGGTCGAGGATGGCCAGGGCCAACCCTGG
CTGCTGAAGACCCTTCCCGCCGCACGTGCCGACGATCCGCTGGCAACCCAGGCCCTGCTGCTCGAGGAATGG
TTCCTGCGCCGCGTCCAGGGCCGGCATTTCCCCGAGCTGCACGGATTGGCGCAACGCCAGCATCTGTATTAC
CTGATGCGCGAGCACCCCGGAGAGACTCTCGCCGAGCGCTTGCGCAACCATGGCCCGCTGTCGCTGCCGGAG
TGGCTGGGGCTGGCCAACCAGCTGCTGCGCGGGCTTGGCCAGTTGCATCGACGCAACCTGCTGCACCGCGAC
CTCAAGCCGGAAAATCTCCACCTCGGCCGCGACGGCGAGCTGCGCCTGCTGGATTTCGGCCTGGCCTGGTGT
CCGGGATTGTCGCACGAAGACCCCCATCTGCTACCGGGTACGCCCAGCTACCTGGCGCCGGAGTGCTTCTCC
GGCACCTCGCCCTCGGTGCGCCAGGATCTCTACGCCACCGGCGTCTGCCTCTACCAGGCGCTGACCGGGCGC
TATCCCTATGGCGAGATCGAAGCCTTCCAGCACCCGCGCTTCGGTCGCCCCGTCCCGCCCAGCCGCTATCGC
CCCGACCTGCCGGCCTGGATCGACGACCTGCTGCTGCGCGCCGTCGCCTGCGACCCCGCACAGCGCTTCGAG
ACCGCCGAGGAATGGCTGCTCTCGCTGCAACAGGGAGAAGCGTTGCCGGCCGCGGCACCCCGCCCATTGCTG
GAGCGCGAACCGCTGCAGACCTGGCGCGCCATCGCCCTGCTGTCCCTGGCCGCCAACCTGGCGCTACTCCTG
GTCTGGCTGAAGGGCTGA