ViewGene
Locus Name:
GeneID:
Location:

GeneID:6227
TrivialName: PA14_25410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25410
PAO1 Ortholog Locus:
Sequence Length:309
Protein Length:102
Start: 2221577
Stop: 2221269
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM37154.1| (AE011867) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
Identities = 36/84 (42%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Sequence:
ATGCTCCGTACGCTACTGCTGTGCTCCCTCCTCCTCGCCCCGCCGCTGTTCGCCGACACCCTGAGCATTCCG
CTGGGCGCCCAGGGCGATACCCGGGTCGCCCTGCCCGCGCGCGGCGAAAGCCGCGAAGCCGTGCTGCAACGC
TTCGGCCTGGCCGACGAGGAACATCCCGCGGTCGGCCAGCCGCCCATCGTGCGCTGGGATTACCGCGACTTC
TCGGTATATTTCGAAAGCGGCCGGGTGATCGACAGCGTTCGCCATCATCGGCCGCGGAATCCCGCGCAACCC
TCGAACAAGGAGCCACAGTGA
Translation:
MLRTLLLCSLLLAPPLFADTLSIPLGAQGDTRVALPARGESREAVLQRFGLADEEHPAVGQPPIVRWDYRDF
SVYFESGRVIDSVRHHRPRNPAQPSNKEPQ*
AnnotationID:6228GeneID:6227
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 13:01:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:12306




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29572




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49229How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2732348Stop: 2732656

          
Length: 309


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCTCCGTACGCTACTGCTGTGCTCCCTCCTCCTCGCCCCGCCGCTGTTCGCCGACACCCTGAGCATTCCG 
CTGGGCGCCCAGGGCGATACCCGGGTCGCCCTGCCCGCGCGCGGCGAAAGCCGCGAAGCCGTGCTGCAACGC 
TTCGGCCTGGCCGACGAGGAACATCCCGCGGTCGGCCAGCCGCCCATCGTGCGCTGGGATTACCGCGACTTC 
TCGGTATATTTCGAAAGCGGCCGGGTGATCGACAGCGTTCGCCATCATCGGCCGCGGAATCCCGCGCAACCC 
TCGAACAAGGAGCCACAGTGA