ViewGene
Locus Name:
GeneID:
Location:

GeneID:6214
TrivialName: PA14_26080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26080
PAO1 Ortholog Locus:
Sequence Length:201
Protein Length:66
Start: 2278467
Stop: 2278667
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06323.1|AE004719_9 (AE004719) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 65/66 (98%), Positives = 66/66 (100%)
Sequence:
GTGCACTTTCAAGGACGGCAAGTGCATATCCTGCGTCTTTTCCGCCATGACGATTCTCGAGGTGAGAGCATG
AGTAGTGAGCACGATGGCAAGGACCAGGACGACCTGTTCTCCCCGTTGCCTTACCTGCTGGTTTCCGGCGCT
GTCGTGCTCATGACCCTGCTGCTGCGCTGCCTGTTCTGCCCGGGCGAGCAGTTCTGA
Translation:
MHFQGRQVHILRLFRHDDSRGESMSSEHDGKDQDDLFSPLPYLLVSGAVVLMTLLLRCLFCPGEQF*
AnnotationID:6215GeneID:6214
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 13:01:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
Confirmed frame-shift upstream of this ORF results in loss of first 93 amino acids of PAO1 PA2935.  
This ORF has 65/66 (98%) identity with C-terminus of PAO1 PA2935.


















    ReferenceID:16018




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29546




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6214
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7956
                           PA2935_tr
                           translation of PA2935
                           159
                           41.50
                           41.50
                           93
                           350.0
     

     
     
198640
                           gb|AAG06323.1|AE004719_9
                           (AE004719) hypothetical protein PA2935 [Pseudomonas aeruginosa PAO1]
                           159
                           41.50
                           41.50
                           93
                           350.0
     

     






      

          
GC ORFID: 49216How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2675458Stop: 2675258

          
Length: 201


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2935 translation of PA2935Homolog Bit Score 139.0

          
Other Homologs:  t_PA2935 translation of PA2935 (BLASTP 139)

          
GC ORF Sequence

           
GTGCACTTTCAAGGACGGCAAGTGCATATCCTGCGTCTTTTCCGCCATGACGATTCTCGAGGTGAGAGCATG 
AGTAGTGAGCACGATGGCAAGGACCAGGACGACCTGTTCTCCCCGTTGCCTTACCTGCTGGTTTCCGGCGCT 
GTCGTGCTCATGACCCTGCTGCTGCGCTGCCTGTTCTGCCCGGGCGAGCAGTTCTGA