ViewGene

Locus Name:
GeneID:
Location:

GeneID:621
TrivialName: PA14_04780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04780
PAO1 Ortholog Locus:PA0364
Sequence Length:1596
Protein Length:531
Start: 423594
Stop: 421999
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03753.1|AE004474_5 (AE004474) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 531/531 (100%), Positives = 531/531 (100%)
Sequence:
ATGCCTGTACCCGATCTGTTCGCCGAGGGCCTCGCCCGCGGCTGGAAAACCTACAACGGCTCGCGCCTGGAC
GACGACCTGGAGCTGGAGGCCGACGTGGTCGTGGTCGGCACCGGCGCCGGCGGCGGCACCACCGCGGAAATC
CTCAGCGCCGCCGGCCTGAAGGTGCTGCTGGTGGAAGAGGGCCCGCTGAAGACCAGCAGCGATTTCAAGATG
CAGGAGGCCGACGCCTACCCCGAGCTGTACCAGGAAGGCATCGGCCGGATGAGCAAGGACGGCGCCATCACC
ATCCTCCAGGGCCGCGCCGTGGGCGGCACCACCCTGATCAACTGGACCAGCAGCTTCCGCACCCCGGAACCG
ACCCTGCAGCACTGGGCCCAGGTCTACGGGGTCAAGGGCCACAGCGCGGAGGACATGGCGCCCTGGTTCGAG
AAAATGGAGCAGCGCCTGCACGTGGCGCCCTGGGCGCTGCCGCCGAATGCCAACAACGACGTGATCCGCCTG
GGCTGCGAGAAGCTCGGCTATCACTGGAAGGTCATCCCGCGCAACGTCCTCGGTTGCTGGAACCTCGGCTAC
TGCGGCATGGGCTGCCCGGTCAACGCCAAGCAGTCGATGCTGGTCACCACCATCCCGGCGACCCTCGACAAG
GGCGGCGAGCTGCTCTACCTGGCGCGCGCCAACCGCCTGCTGCTGGATGGCGACAAGGTGACGGGCCTCGAA
TGCCTGGGCATGGATGAGCGCTGCGTGGCGCCCAACGGCCGCCGGATCAGGGTCCGGGCCAGGCACTACGTG
CTGTCCGGCGGCGGCATCAACACCCCGGCGATTCTTCTCCGCTCGAAGGCGCCTGATCCGAGCCAGCGGGTC
GGCAAGCGCACCTTCCTGCACACGGTGAATTTCAGCGCAGGGCTGTTCGACCGGGTGATCAACCCCTTCTAC
GGCGCACCGCAGTCGATCTACTCCGACCATTTCCAATGGGACGACGGCGTCACCGGACGCATGTCCTACAAA
CTGGAGGTGCCGCCGCTGCAACCGTCGCTGGCCTCGGTGCTGCTCGGCGGCTTCGGCAGCGACAACGCCCTG
CGCATGGAACAGCTACCGCATACCAACATGATGCTCGCCCTGCTCCGCGACGGCTTCCACCCGGACAGCGCG
GAGGGCTCGGTCGGCCTGCGCGGCGACGACACCCCGGTGCTCGACTACCGAATGACCGACTACACCTGGGAC
GGTATCCGCCGTGCCTTCCATACCATGGCGGAGATCCAGTTCGCCGCCGGCGCCCGGGAAGTGCGGCCGGTG
CACAGCGACGCGCGTAGCGCGAAGAACCTGCAGGAGGCGCGCGGGATCATCGACGGCCTGCGCCTGGAGATC
TACCGCACGCGCCTGGGCAGCGCCCACGTCATGGGCGGCTGCGCCATGGGCGAAGACCCGGCCGTGGCGGTG
GCCGACAGCCTCGGCCGCCATCACCACCTGCGAAACCTGTCGATCCACGACGGCTCGCTGTTCCCCACCAGC
ATCGGCGCCAACCCGCAGCTCTCGGTCTACGGTCTTACCGCGCAACTGGCCAGCGCGCTGGCCGAACGCCTG
GCCAGGGCCTGA
Translation:
MPVPDLFAEGLARGWKTYNGSRLDDDLELEADVVVVGTGAGGGTTAEILSAAGLKVLLVEEGPLKTSSDFKM
QEADAYPELYQEGIGRMSKDGAITILQGRAVGGTTLINWTSSFRTPEPTLQHWAQVYGVKGHSAEDMAPWFE
KMEQRLHVAPWALPPNANNDVIRLGCEKLGYHWKVIPRNVLGCWNLGYCGMGCPVNAKQSMLVTTIPATLDK
GGELLYLARANRLLLDGDKVTGLECLGMDERCVAPNGRRIRVRARHYVLSGGGINTPAILLRSKAPDPSQRV
GKRTFLHTVNFSAGLFDRVINPFYGAPQSIYSDHFQWDDGVTGRMSYKLEVPPLQPSLASVLLGGFGSDNAL
RMEQLPHTNMMLALLRDGFHPDSAEGSVGLRGDDTPVLDYRMTDYTWDGIRRAFHTMAEIQFAAGAREVRPV
HSDARSAKNLQEARGIIDGLRLEIYRTRLGSAHVMGGCAMGEDPAVAVADSLGRHHHLRNLSIHDGSLFPTS
IGANPQLSVYGLTAQLASALAERLARA*
AnnotationID:630GeneID:621
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 05:05:34
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, GMC family
Cell Localization:()
Synonyms:PA0364
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative dehydrogenase/flavoprotein
Functional Category Confidence Code:5
COGs:COG2303
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70687.1|AE016712_5 (AE016793) oxidoreductase, GMC family [Pseudomonas putida KT2440]
          Length = 532

 Score =  777 bits (2007), Expect = 0.0
 Identities = 370/531 (69%), Positives = 439/531 (82%)

>gb|AAN53958.1|AE015533_9 (AE015533) oxidoreductase, GMC family [Shewanella oneidensis MR-1]
          Length = 533

 Score =  521 bits (1341), Expect = e-147
 Identities = 263/531 (49%), Positives = 351/531 (66%), Gaps = 8/531 (1%)

Structural Features:
COG2303, BetA, Choline dehydrogenase and related flavoproteins 
[Amino acid transport and metabolism]
CD-Length = 542 residues,  99.6% aligned
Score =  260 bits (666), Expect = 2e-70
Identities = 129/548 (23%), Positives = 185/548 (33%), Gaps = 48/548 (8%)
Genomic Context:
Comment:
ReferenceID:1245
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18387
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38074
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:621_cdd.html
URL:
Homologs By Global Alignment
Gene ID:621

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1056 PA0364_tr translation of PA0364 531 99.99 99.99 0 2799.0
40795 gb|AAG03753.1|AE004474_5 (AE004474) probable oxidoreductase [Pseudomonas aeruginosa PAO1] 531 99.99 99.99 0 2799.0
40796 gb|AAN70687.1|AE016712_5 (AE016793) oxidoreductase, GMC family [Pseudomonas putida KT2440] 532 69.54 82.51 1 2007.0
40797 gb|AAQ60160.1| (AE016918) probable glucose-methanol-choline oxidoreductase [Chromobacterium violaceum ATCC 12472] 535 53.64 65.23 23 1440.0
40798 gb|AAN53958.1|AE015533_9 (AE015533) oxidoreductase, GMC family [Shewanella oneidensis MR-1] 538 48.88 65.24 12 1346.0
GC ORFID: 43623How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0364Glimmer Score:
Start: 6224936Stop: 6223341
Length: 1596
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0364 translation of PA0364Homolog Bit Score 1082.0
Other Homologs: t_PA0364 (ORF: GLIMMER)
GC ORF Sequence
ATGCCTGTACCCGATCTGTTCGCCGAGGGCCTCGCCCGCGGCTGGAAAACCTACAACGGCTCGCGCCTGGAC
GACGACCTGGAGCTGGAGGCCGACGTGGTCGTGGTCGGCACCGGCGCCGGCGGCGGCACCACCGCGGAAATC
CTCAGCGCCGCCGGCCTGAAGGTGCTGCTGGTGGAAGAGGGCCCGCTGAAGACCAGCAGCGATTTCAAGATG
CAGGAGGCCGACGCCTACCCCGAGCTGTACCAGGAAGGCATCGGCCGGATGAGCAAGGACGGCGCCATCACC
ATCCTCCAGGGCCGCGCCGTGGGCGGCACCACCCTGATCAACTGGACCAGCAGCTTCCGCACCCCGGAACCG
ACCCTGCAGCACTGGGCCCAGGTCTACGGGGTCAAGGGCCACAGCGCGGAGGACATGGCGCCCTGGTTCGAG
AAAATGGAGCAGCGCCTGCACGTGGCGCCCTGGGCGCTGCCGCCGAATGCCAACAACGACGTGATCCGCCTG
GGCTGCGAGAAGCTCGGCTATCACTGGAAGGTCATCCCGCGCAACGTCCTCGGTTGCTGGAACCTCGGCTAC
TGCGGCATGGGCTGCCCGGTCAACGCCAAGCAGTCGATGCTGGTCACCACCATCCCGGCGACCCTCGACAAG
GGCGGCGAGCTGCTCTACCTGGCGCGCGCCAACCGCCTGCTGCTGGATGGCGACAAGGTGACGGGCCTCGAA
TGCCTGGGCATGGATGAGCGCTGCGTGGCGCCCAACGGCCGCCGGATCAGGGTCCGGGCCAGGCACTACGTG
CTGTCCGGCGGCGGCATCAACACCCCGGCGATTCTTCTCCGCTCGAAGGCGCCTGATCCGAGCCAGCGGGTC
GGCAAGCGCACCTTCCTGCACACGGTGAATTTCAGCGCAGGGCTGTTCGACCGGGTGATCAACCCCTTCTAC
GGCGCACCGCAGTCGATCTACTCCGACCATTTCCAATGGGACGACGGCGTCACCGGACGCATGTCCTACAAA
CTGGAGGTGCCGCCGCTGCAACCGTCGCTGGCCTCGGTGCTGCTCGGCGGCTTCGGCAGCGACAACGCCCTG
CGCATGGAACAGCTACCGCATACCAACATGATGCTCGCCCTGCTCCGCGACGGCTTCCACCCGGACAGCGCG
GAGGGCTCGGTCGGCCTGCGCGGCGACGACACCCCGGTGCTCGACTACCGAATGACCGACTACACCTGGGAC
GGTATCCGCCGTGCCTTCCATACCATGGCGGAGATCCAGTTCGCCGCCGGCGCCCGGGAAGTGCGGCCGGTG
CACAGCGACGCGCGTAGCGCGAAGAACCTGCAGGAGGCGCGCGGGATCATCGACGGCCTGCGCCTGGAGATC
TACCGCACGCGCCTGGGCAGCGCCCACGTCATGGGCGGCTGCGCCATGGGCGAAGACCCGGCCGTGGCGGTG
GCCGACAGCCTCGGCCGCCATCACCACCTGCGAAACCTGTCGATCCACGACGGCTCGCTGTTCCCCACCAGC
ATCGGCGCCAACCCGCAGCTCTCGGTCTACGGTCTTACCGCGCAACTGGCCAGCGCGCTGGCCGAACGCCTG
GCCAGGGCCTGA