ViewGene
Locus Name:
GeneID:
Location:

GeneID:620
TrivialName: PA14_66580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66580
PAO1 Ortholog Locus:PA5037
Sequence Length:1656
Protein Length:551
Start: 5945423
Stop: 5943768
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08422.1|AE004917_1 (AE004917) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 550/551 (99%), Positives = 550/551 (99%)
Sequence:
ATGACCAGCTTGCATGCCGATGAGGCCTTCCTGGGCCACTACCAATTCAGTCACGACCCGTTCGCGCCGCGC
GTTCCGGGTTTCAAGTTCTTCCCGGCGCAGCGCAAGCCGGTGCTCGGCCAGTTGCACCATCTGGCCCGCTAC
AGCCAGCTCCTGCTGCTGGTCACCGGGCCCCTGGGCAGCGGCAAGACCCTGCTGCGCCAGGCGCTGGTGGCC
AGCACCAACAAGGATGCGGTCCTCAGCGTGGTGATCTCGGCGCGCACCGCCGCCGACGAGACTTCGTTGCTG
CGCCAGGTGGCGCAGGGCCTGAGCATCAACCAGGCGAGCCTGGAGGCGATCCTGACCAAGGTGGCGCAGCTG
GCGATCACCGGGCAGGACGTCTACCTGATGGTGGACGATGCCGAGCAGCTCCAGGACAGCGCGCTGGAAGTG
CTGTTGCTGCTGGCTTCCGGCACCAACGAGGGACGCCTGCATGTATTCCTGTTCGGTGAGCCGTCGTTGCTG
CCGCGCCTGGAGGTGTTTTCCGAGGGTGAGGAGCGCTTCCATGCCATCGAGTTGCAGCCATACAGCGAAGAG
GAAACCCGCGACTACCTGGCCCAGCGTCTCGAGGGCGCCGGGCAGGGCATCGAGCTGATTTCCAACGACCTG
CTGGTGGACATCCACGAGCAGTCGGAAGGCTGGCCGGGAGCGATCAACCAGGTCGCCCGCGATGCCCTGATC
GAAGCGATGCTGGCCAATCGTGGCGCAGCGCGCAAGGCAACCGGAGGGTCTTTCAACTTGCCCAAGAAGCAT
CTGGTGATTCTTGCGGTCGTGGCCATCGGCGTGATCGCCGCCTGGTTCATGCAAGGCAAGAGCAAGCCGGAG
GCGCCGCAgaCCGCCTCTACCGAATTGTCCATGAATGGCGCTACGCCGGCCCAGGCCCAGCAGCCGGGCAGC
GGCCCGGCCGTGGAGTTCAACGGCTCCAGCCAGCCGTTGCCGCTACCGTTGGTCGGCGAGTCGCAGCCGGTC
ATTCGCGAGCCGCTGGCCCAGGCCGCCGGGCAAGGTGGCGACGACGAAGGCGGCCTGCCGTCCGCCGCGGTG
CCGCCTACCGTTTCCAGCTCGGCTCCTCCGGTGACGCCGCTGGCCAACAACGGCGTCACGCCGATGCATCCG
GTGCCGCCGGCGCCGACCGAACCGACCGCGCCTGCGGCGACCCCGACTCCGGCGCAGACCCCGGCACCGGCC
GCGCCGGTCGCCAGCGCTCCGGCCAGCAAGCCGGCCCCGGCCCCCGCTCCGGCCAAGCCGGCGGCGAGCAAG
CCGGCCACCACCGCCGCGGCGAAGCCGGCCCCGGCTCCGGCCGCCAAGCCGGCCAGCGGTGGCGGTGCGGGA
AGCCAGTGGTATCGCAACCAGTCTGGTGGTAACTTCGCCCTGCAGATCCTCGGTACCGGCTCCGAAGCCAAT
GCCCAGGCGTTCATTCGCCAGCAGGGCGGCGGCGATTTCCGCTACTTCAAGAAAACCCTGCAAGGCAAGCCG
TTCTACGTCGTCACCTATGGCAGCTTCCCGAATCGTGCCGCCGCCCTGGCCGCAGTGAAAAAACTGCCGTCC
AAGGTGCAGGCCGGCAAGCCGTGGCCGCGTACCTTCGCCAGCATCCAGCAGGAGATCGGCCAGGCGCATTGA
Translation:
MTSLHADEAFLGHYQFSHDPFAPRVPGFKFFPAQRKPVLGQLHHLARYSQLLLLVTGPLGSGKTLLRQALVA
STNKDAVLSVVISARTAADETSLLRQVAQGLSINQASLEAILTKVAQLAITGQDVYLMVDDAEQLQDSALEV
LLLLASGTNEGRLHVFLFGEPSLLPRLEVFSEGEERFHAIELQPYSEEETRDYLAQRLEGAGQGIELISNDL
LVDIHEQSEGWPGAINQVARDALIEAMLANRGAARKATGGSFNLPKKHLVILAVVAIGVIAAWFMQGKSKPE
APQTASTELSMNGATPAQAQQPGSGPAVEFNGSSQPLPLPLVGESQPVIREPLAQAAGQGGDDEGGLPSAAV
PPTVSSSAPPVTPLANNGVTPMHPVPPAPTEPTAPAATPTPAQTPAPAAPVASAPASKPAPAPAPAKPAASK
PATTAAAKPAPAPAAKPASGGGAGSQWYRNQSGGNFALQILGTGSEANAQAFIRQQGGGDFRYFKKTLQGKP
FYVVTYGSFPNRAAALAAVKKLPSKVQAGKPWPRTFASIQQEIGQAH*
AnnotationID:629GeneID:620
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 16:04:50
Gene Name:
Confidence Code:3
GeneProduct:putative Type II secretory pathway protein
Cell Localization:()
Synonyms:PA5037
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3267
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) 
[Intracellular trafficking and secretion]
CD-Length = 269 residues, 100.0% aligned
Score =  260 bits (666), Expect = 2e-70
Identities = 109/269 (40%), Positives = 136/269 (50%), Gaps = 11/269 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1243




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18385




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34983




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:620_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:620
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1055
                           PA5037_tr
                           translation of PA5037
                           551
                           99.81
                           99.81
                           0
                           2803.0
     

     
     
40791
                           gb|AAG08422.1|AE004917_1
                           (AE004917) hypothetical protein PA5037 [Pseudomonas aeruginosa PAO1]
                           551
                           99.81
                           99.81
                           0
                           2803.0
     

     
     
40793
                           gb|AAN70642.1|AE016708_3
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           562
                           61.56
                           72.77
                           44
                           1653.0
     

     
     
40792
                           gb|AAO58552.1|
                           (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           567
                           61.37
                           73.36
                           42
                           1677.0
     

     
     
40794
                           gb|AAB39258.1|
                           (U81261) orf [Pseudomonas aeruginosa]
                           551
                           14.15
                           14.15
                           473
                           408.0
     

     






      

          
GC ORFID: 43622How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5037Glimmer Score: 

          
Start: 5209106Stop: 5207451

          
Length: 1656


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5037 translation of PA5037Homolog Bit Score 1084.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3297 (ORF: BLASTX 627.0), t_PA5037 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAGCTTGCATGCCGATGAGGCCTTCCTGGGCCACTACCAATTCAGTCACGACCCGTTCGCGCCGCGC 
GTTCCGGGTTTCAAGTTCTTCCCGGCGCAGCGCAAGCCGGTGCTCGGCCAGTTGCACCATCTGGCCCGCTAC 
AGCCAGCTCCTGCTGCTGGTCACCGGGCCCCTGGGCAGCGGCAAGACCCTGCTGCGCCAGGCGCTGGTGGCC 
AGCACCAACAAGGATGCGGTCCTCAGCGTGGTGATCTCGGCGCGCACCGCCGCCGACGAGACTTCGTTGCTG 
CGCCAGGTGGCGCAGGGCCTGAGCATCAACCAGGCGAGCCTGGAGGCGATCCTGACCAAGGTGGCGCAGCTG 
GCGATCACCGGGCAGGACGTCTACCTGATGGTGGACGATGCCGAGCAGCTCCAGGACAGCGCGCTGGAAGTG 
CTGTTGCTGCTGGCTTCCGGCACCAACGAGGGACGCCTGCATGTATTCCTGTTCGGTGAGCCGTCGTTGCTG 
CCGCGCCTGGAGGTGTTTTCCGAGGGTGAGGAGCGCTTCCATGCCATCGAGTTGCAGCCATACAGCGAAGAG 
GAAACCCGCGACTACCTGGCCCAGCGTCTCGAGGGCGCCGGGCAGGGCATCGAGCTGATTTCCAACGACCTG 
CTGGTGGACATCCACGAGCAGTCGGAAGGCTGGCCGGGAGCGATCAACCAGGTCGCCCGCGATGCCCTGATC 
GAAGCGATGCTGGCCAATCGTGGCGCAGCGCGCAAGGCAACCGGAGGGTCTTTCAACTTGCCCAAGAAGCAT 
CTGGTGATTCTTGCGGTCGTGGCCATCGGCGTGATCGCCGCCTGGTTCATGCAAGGCAAGAGCAAGCCGGAG 
GCGCCGCAgaCCGCCTCTACCGAATTGTCCATGAATGGCGCTACGCCGGCCCAGGCCCAGCAGCCGGGCAGC 
GGCCCGGCCGTGGAGTTCAACGGCTCCAGCCAGCCGTTGCCGCTACCGTTGGTCGGCGAGTCGCAGCCGGTC 
ATTCGCGAGCCGCTGGCCCAGGCCGCCGGGCAAGGTGGCGACGACGAAGGCGGCCTGCCGTCCGCCGCGGTG 
CCGCCTACCGTTTCCAGCTCGGCTCCTCCGGTGACGCCGCTGGCCAACAACGGCGTCACGCCGATGCATCCG 
GTGCCGCCGGCGCCGACCGAACCGACCGCGCCTGCGGCGACCCCGACTCCGGCGCAGACCCCGGCACCGGCC 
GCGCCGGTCGCCAGCGCTCCGGCCAGCAAGCCGGCCCCGGCCCCCGCTCCGGCCAAGCCGGCGGCGAGCAAG 
CCGGCCACCACCGCCGCGGCGAAGCCGGCCCCGGCTCCGGCCGCCAAGCCGGCCAGCGGTGGCGGTGCGGGA 
AGCCAGTGGTATCGCAACCAGTCTGGTGGTAACTTCGCCCTGCAGATCCTCGGTACCGGCTCCGAAGCCAAT 
GCCCAGGCGTTCATTCGCCAGCAGGGCGGCGGCGATTTCCGCTACTTCAAGAAAACCCTGCAAGGCAAGCCG 
TTCTACGTCGTCACCTATGGCAGCTTCCCGAATCGTGCCGCCGCCCTGGCCGCAGTGAAAAAACTGCCGTCC 
AAGGTGCAGGCCGGCAAGCCGTGGCCGCGTACCTTCGCCAGCATCCAGCAGGAGATCGGCCAGGCGCATTGA