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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG06364.1|AE004723_8 (AE004723) ribonuclease E [Pseudomonas aeruginosa PAO1]
Identities = 1050/1057 (99%), Positives = 1050/1057 (99%)
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Sequence:
ATGAAAAGAATGCTGATCAACGCGACTCAACCCGAGGAGTTGCGTGTTGCACTGGTCGACGGCCAACGCCTG
TTCGACCTCGACATCGAGTCGGGCGCCCGCGAGCAGAAGAAGGCCAACATCTACAAAGGCCGCATCACTCGC
GTCGAACCCAGCCTCGAAGCCGCCTTCGTCGACTTCGGCGCCGAACGCCACGGCTTCCTCCCCCTCAAAGAA
ATCTCCCGCGAATACTTCAAGAAATCCCCCGAAGGCCGGATCAACATCAAGGAAGTCCTGAGCGAAGGCCAG
GAAGTCATCGTCCAGGTCGAGAAGGAAGAGCGCGGCAACAAGGGCGCCGCCCTGACCACCTTCATCAGCCTG
GCCGGCCGTTACCTGGTGCTGATGCCGAACAACCCGCGCGCCGGCGGCATCTCCCGTCGTATCGAAGGCGAA
GAACGCAACGAGCTGCGCGAGGCCCTGAACGGCCTCAACGCACCGGCCGACATGGGCCTGATCGTGCGCACC
GCCGGCCTCGGCCGCAGCACCGAGGAACTGCAGTGGGACCTCGACTACCTGCTGCAACTGTGGAGCGCGATC
AAGGAAGCGTCCGGCGAACGTGGCGCGCCCTTCCTGATCTACCAGGAAAGCAACGTCATCATCCGCGCCATC
CGCGACTACCTGCGCCAGGACATCGGCGAAGTGCTGATCGACAGCATCGACGCCCAGGAAGAAGCCCTGAAC
TTCATCCGCCAGGTGATGCCGCAGTACGCCAGCAAGGTGAAGCTGTACCAGGACAGCGTTCCGCTGTTCAAT
CGCTTCCAGATCGAGAGCCAGATCGAGACCGCTTTCCAGCGCGAAGTGAAGCTGCCGTCCGGCGGCTCCATC
GTCATCGACCCGACCGAGGCCCTGGTTTCCATCGACATCAACTCGGCGCGCGCCACCAAGGGCGGCGACATC
GAGGAAACCGCCCTGCAGACCAACCTGGAAGCGGCCGAGGAAATCGCCCGCCAGCTGCGCCTGCGTGACATC
GGTGGCCTGATCGTCATCGACTTCATCGACATGACCCCGGCGAAGAACCAGCGCGCCGTGGAAGAGCGTGTC
CGCGAAGCCCTCGAGGCCGATCGCGCGCGCGTCCAGGTCGGTCGCATCTCGCGCTTCGGCCTGCTGGAAATG
TCCCGCCAGCGCCTGCGTCCGTCCCTCGGCGAGACCAGCGGCATCGTCTGCCCGCGCTGCAACGGCCAGGGC
ATCATCCGCGACGTCGAGTCGCTGTCGCTGGCCATCCTGCGCCTGATCGAGGAAGAAGCCCTGAAGGACCGC
ACCGCGGAAGTCCGCGCCCGCGTGCCCTTCCAGGTCGCCGCCTTCCTGCTCAACGAGAAGCGCAACGCCATC
ACCAAGATCGAACTGCGCACCCGCGCGCGCATCTTCATCCTGCCGGACGATCATCTGGAAACCCCGCATTTC
GAAGTCCAGCGTCTGCGCGATGACAGCCCCGAACTGGTTGCCGGCCAGACCAGCTACGAAATGGCCACCGTC
GAGCACGAAGAAGCCCAGCCGGTCAGCTCGACCCGCACCCTGGTCCGCCAGGAAGCAGCAGTCAAGACCGTC
GCTCCCCAGCAGCCCGCACCGCAACACACCGAAGCACCGGTCGAGCCGGCCAAGCCGATGCCCGAGCCGAGC
CTGTTCCAGGGCCTGGTGAAGTCCCTGGTCGGCCTGTTCGCAGGCAAGGATCAACCTGCCGCCAAGCCTGCT
GAAACCAGCAAGCCGGCTGCCGAGCGCCAAACCCGCCAGGACGAGCGTCGCAACGGCCGCCAGCAGAACCGC
CGCCGCGATGGCCGCGATGGCAATCGCCGCGACGAAGAGCGCAAGCCCCGCGAGGAACGCGCAGAGCGCCAA
CCGCGCGAAGAGCGCGCCGAACGCCCGAACCGCGAAGAGCGCAGCGAACGCCGCCGCGAAGAGCGCGCCGAG
CGCCCGGCTCGCGAGGAGCGCCAGCCGCGCGAAGGCCGTGAAGAGCGCGCCGAGCGGACGCCCCGCGAAGAA
CGCCAGCCGCGCGAAGGCCGCGAAGGTCGCGAGGAACGCAGCGAACGCCGCCGCGAAGAGCGCGCCGAACGC
CCGGCTCGCGAAGAGCGCCAACCCCGCGAAGGCCGTGAAGAACGCGCCGAGCGCCCGGCCCGCGAAGAGCGC
CAGCCGCGCGAGGATCGCCAGGCTCGCGACGCCGCGGCCCTGGAAGCCGAGGCGCTGCCGAACGACGAGAGC
CTGGAGCAGGACGAGCAGGACGATACCGATGGCGAGCGCCCGCGCCGCCGCTCCCGCGGCCAGCGTCGTCGC
AGCAACCGCCGCGAACGCCAGCGCGAGGTCAGCGGCGAGCTGGAAGGCAGCGAGGCGACCGATAACGCCGCC
GCGCCGCTGAACACCGTCGCAGCCGCCGCTGCTGCCGGTATCGCTGTCGCCAGCGAAGCCGTAGAAGCAAAC
GTGGAGCAAGCCCCGGCCACTACCAGCGAGGCTGCCAGCGAAACCACGGCAAGCGATGAAACCGACGCGCCG
ACCAGCGAAGCCGTGGAAACCCAGGGCGCGGACAGCGAGGCCAATGCCGGCGAAACCGCCGACATCGAAGCG
CCGGTGACCGTCAGCGTGGTCCGGGACGAAGCCGACCAGAGCACCCTGCTGGTCGCGCAAGTCACTGAAGAA
GCTCCCTTCGCCAGCGAAAGCGTGGAAAGCCGCGAAGACGCCGAGAGCGCCGTGCAACCGGCAACGGAAGCG
GCCGAAGAAGTTGCCGCCCCGGCGCCCGTCGAGGTAGCAGCCCCTAGCGAGCCCGCAGCCACCGAGGAGCCG
ACCCCGGCCATCGCGGCGGTGCCGGCCAACGCGACTGGCCGTGCCCTCAACGACCCACGGGAAAAACGTCGC
CTGCAACGCGAAGCCGAGCGTCTGGCACGCGAAGCCGCAGCAGCAGCCGAAGCGGCAGCTCAGGCCGCTCCC
GCCGTCGAGGAGACCCCAGCTGTAGCGAGCGAGGAAGCGTCGGCCCAGGAGGAACCTGCTGCACCCCAGGCT
GAAGAAATCGCCCAGGCCGACGTTCCGTCTCAGGCGGACGAAGCCCAGGAAGCGGTACAGGCCGAGCCTGAA
GCTTCCGGCGAAGACGCCGCCGACACAGAGCACGCGAAAAAGACCGAGGAAAGCGAAACCTCGCGCCCGCAT
GCCTGA |
Translation:
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLKE
ISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGE
ERNELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEASGERGAPFLIYQESNVIIRAI
RDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSI
VIDPTEALVSIDINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALKDR
TAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSPELVAGQTSYEMATV
EHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPA
ETSKPAAERQTRQDERRNGRQQNRRRDGRDGNRRDEERKPREERAERQPREERAERPNREERSERRREERAE
RPAREERQPREGREERAERTPREERQPREGREGREERSERRREERAERPAREERQPREGREERAERPAREER
QPREDRQARDAAALEAEALPNDESLEQDEQDDTDGERPRRRSRGQRRRSNRRERQREVSGELEGSEATDNAA
APLNTVAAAAAAGIAVASEAVEANVEQAPATTSEAASETTASDETDAPTSEAVETQGADSEANAGETADIEA
PVTVSVVRDEADQSTLLVAQVTEEAPFASESVESREDAESAVQPATEAAEEVAAPAPVEVAAPSEPAATEEP
TPAIAAVPANATGRALNDPREKRRLQREAERLAREAAAAAEAAAQAAPAVEETPAVASEEASAQEEPAAPQA
EEIAQADVPSQADEAQEAVQAEPEASGEDAADTEHAKKTEESETSRPHA* |
AnnotationID:72 | GeneID:62 |
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Modification Date/Time: |
2005-04-11 07:07:15 |
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GeneProduct: | ribonuclease E |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (24) Transcription, RNA processing and degradation |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN67524.1|AE016381_1 (AE016781) ribonuclease E [Pseudomonas putida KT2440]
Length = 1091
Score = 1264 bits (3270), Expect = 0.0
Identities = 745/1098 (67%), Positives = 808/1098 (73%), Gaps = 115/1098 (10%)
>gb|AAO57308.1| (AE016869) ribonuclease, Rne/Rng family protein [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 1128
Score = 1209 bits (3128), Expect = 0.0
Identities = 717/1128 (63%), Positives = 794/1128 (70%), Gaps = 131/1128 (11%)
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Structural Features: | COG1530, CafA, Ribonucleases G and E
[Translation, ribosomal structure and biogenesis]
CD-Length = 487 residues, 99.8% aligned
Score = 516 bits (1330), Expect = 6e-147
Identities = 286/490 (58%), Positives = 350/490 (71%), Gaps = 6/490 (1%)
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