ViewGene

Locus Name:
GeneID:
Location:

GeneID:62
TrivialName: PA14_25560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25560
PAO1 Ortholog Locus:PA2976
Sequence Length:3174
Protein Length:1057
Start: 2236447
Stop: 2233274
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06364.1|AE004723_8 (AE004723) ribonuclease E [Pseudomonas aeruginosa PAO1]
Identities = 1050/1057 (99%), Positives = 1050/1057 (99%)
Sequence:
ATGAAAAGAATGCTGATCAACGCGACTCAACCCGAGGAGTTGCGTGTTGCACTGGTCGACGGCCAACGCCTG
TTCGACCTCGACATCGAGTCGGGCGCCCGCGAGCAGAAGAAGGCCAACATCTACAAAGGCCGCATCACTCGC
GTCGAACCCAGCCTCGAAGCCGCCTTCGTCGACTTCGGCGCCGAACGCCACGGCTTCCTCCCCCTCAAAGAA
ATCTCCCGCGAATACTTCAAGAAATCCCCCGAAGGCCGGATCAACATCAAGGAAGTCCTGAGCGAAGGCCAG
GAAGTCATCGTCCAGGTCGAGAAGGAAGAGCGCGGCAACAAGGGCGCCGCCCTGACCACCTTCATCAGCCTG
GCCGGCCGTTACCTGGTGCTGATGCCGAACAACCCGCGCGCCGGCGGCATCTCCCGTCGTATCGAAGGCGAA
GAACGCAACGAGCTGCGCGAGGCCCTGAACGGCCTCAACGCACCGGCCGACATGGGCCTGATCGTGCGCACC
GCCGGCCTCGGCCGCAGCACCGAGGAACTGCAGTGGGACCTCGACTACCTGCTGCAACTGTGGAGCGCGATC
AAGGAAGCGTCCGGCGAACGTGGCGCGCCCTTCCTGATCTACCAGGAAAGCAACGTCATCATCCGCGCCATC
CGCGACTACCTGCGCCAGGACATCGGCGAAGTGCTGATCGACAGCATCGACGCCCAGGAAGAAGCCCTGAAC
TTCATCCGCCAGGTGATGCCGCAGTACGCCAGCAAGGTGAAGCTGTACCAGGACAGCGTTCCGCTGTTCAAT
CGCTTCCAGATCGAGAGCCAGATCGAGACCGCTTTCCAGCGCGAAGTGAAGCTGCCGTCCGGCGGCTCCATC
GTCATCGACCCGACCGAGGCCCTGGTTTCCATCGACATCAACTCGGCGCGCGCCACCAAGGGCGGCGACATC
GAGGAAACCGCCCTGCAGACCAACCTGGAAGCGGCCGAGGAAATCGCCCGCCAGCTGCGCCTGCGTGACATC
GGTGGCCTGATCGTCATCGACTTCATCGACATGACCCCGGCGAAGAACCAGCGCGCCGTGGAAGAGCGTGTC
CGCGAAGCCCTCGAGGCCGATCGCGCGCGCGTCCAGGTCGGTCGCATCTCGCGCTTCGGCCTGCTGGAAATG
TCCCGCCAGCGCCTGCGTCCGTCCCTCGGCGAGACCAGCGGCATCGTCTGCCCGCGCTGCAACGGCCAGGGC
ATCATCCGCGACGTCGAGTCGCTGTCGCTGGCCATCCTGCGCCTGATCGAGGAAGAAGCCCTGAAGGACCGC
ACCGCGGAAGTCCGCGCCCGCGTGCCCTTCCAGGTCGCCGCCTTCCTGCTCAACGAGAAGCGCAACGCCATC
ACCAAGATCGAACTGCGCACCCGCGCGCGCATCTTCATCCTGCCGGACGATCATCTGGAAACCCCGCATTTC
GAAGTCCAGCGTCTGCGCGATGACAGCCCCGAACTGGTTGCCGGCCAGACCAGCTACGAAATGGCCACCGTC
GAGCACGAAGAAGCCCAGCCGGTCAGCTCGACCCGCACCCTGGTCCGCCAGGAAGCAGCAGTCAAGACCGTC
GCTCCCCAGCAGCCCGCACCGCAACACACCGAAGCACCGGTCGAGCCGGCCAAGCCGATGCCCGAGCCGAGC
CTGTTCCAGGGCCTGGTGAAGTCCCTGGTCGGCCTGTTCGCAGGCAAGGATCAACCTGCCGCCAAGCCTGCT
GAAACCAGCAAGCCGGCTGCCGAGCGCCAAACCCGCCAGGACGAGCGTCGCAACGGCCGCCAGCAGAACCGC
CGCCGCGATGGCCGCGATGGCAATCGCCGCGACGAAGAGCGCAAGCCCCGCGAGGAACGCGCAGAGCGCCAA
CCGCGCGAAGAGCGCGCCGAACGCCCGAACCGCGAAGAGCGCAGCGAACGCCGCCGCGAAGAGCGCGCCGAG
CGCCCGGCTCGCGAGGAGCGCCAGCCGCGCGAAGGCCGTGAAGAGCGCGCCGAGCGGACGCCCCGCGAAGAA
CGCCAGCCGCGCGAAGGCCGCGAAGGTCGCGAGGAACGCAGCGAACGCCGCCGCGAAGAGCGCGCCGAACGC
CCGGCTCGCGAAGAGCGCCAACCCCGCGAAGGCCGTGAAGAACGCGCCGAGCGCCCGGCCCGCGAAGAGCGC
CAGCCGCGCGAGGATCGCCAGGCTCGCGACGCCGCGGCCCTGGAAGCCGAGGCGCTGCCGAACGACGAGAGC
CTGGAGCAGGACGAGCAGGACGATACCGATGGCGAGCGCCCGCGCCGCCGCTCCCGCGGCCAGCGTCGTCGC
AGCAACCGCCGCGAACGCCAGCGCGAGGTCAGCGGCGAGCTGGAAGGCAGCGAGGCGACCGATAACGCCGCC
GCGCCGCTGAACACCGTCGCAGCCGCCGCTGCTGCCGGTATCGCTGTCGCCAGCGAAGCCGTAGAAGCAAAC
GTGGAGCAAGCCCCGGCCACTACCAGCGAGGCTGCCAGCGAAACCACGGCAAGCGATGAAACCGACGCGCCG
ACCAGCGAAGCCGTGGAAACCCAGGGCGCGGACAGCGAGGCCAATGCCGGCGAAACCGCCGACATCGAAGCG
CCGGTGACCGTCAGCGTGGTCCGGGACGAAGCCGACCAGAGCACCCTGCTGGTCGCGCAAGTCACTGAAGAA
GCTCCCTTCGCCAGCGAAAGCGTGGAAAGCCGCGAAGACGCCGAGAGCGCCGTGCAACCGGCAACGGAAGCG
GCCGAAGAAGTTGCCGCCCCGGCGCCCGTCGAGGTAGCAGCCCCTAGCGAGCCCGCAGCCACCGAGGAGCCG
ACCCCGGCCATCGCGGCGGTGCCGGCCAACGCGACTGGCCGTGCCCTCAACGACCCACGGGAAAAACGTCGC
CTGCAACGCGAAGCCGAGCGTCTGGCACGCGAAGCCGCAGCAGCAGCCGAAGCGGCAGCTCAGGCCGCTCCC
GCCGTCGAGGAGACCCCAGCTGTAGCGAGCGAGGAAGCGTCGGCCCAGGAGGAACCTGCTGCACCCCAGGCT
GAAGAAATCGCCCAGGCCGACGTTCCGTCTCAGGCGGACGAAGCCCAGGAAGCGGTACAGGCCGAGCCTGAA
GCTTCCGGCGAAGACGCCGCCGACACAGAGCACGCGAAAAAGACCGAGGAAAGCGAAACCTCGCGCCCGCAT
GCCTGA
Translation:
MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAERHGFLPLKE
ISREYFKKSPEGRINIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGE
ERNELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEASGERGAPFLIYQESNVIIRAI
RDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSI
VIDPTEALVSIDINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALKDR
TAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQRLRDDSPELVAGQTSYEMATV
EHEEAQPVSSTRTLVRQEAAVKTVAPQQPAPQHTEAPVEPAKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPA
ETSKPAAERQTRQDERRNGRQQNRRRDGRDGNRRDEERKPREERAERQPREERAERPNREERSERRREERAE
RPAREERQPREGREERAERTPREERQPREGREGREERSERRREERAERPAREERQPREGREERAERPAREER
QPREDRQARDAAALEAEALPNDESLEQDEQDDTDGERPRRRSRGQRRRSNRRERQREVSGELEGSEATDNAA
APLNTVAAAAAAGIAVASEAVEANVEQAPATTSEAASETTASDETDAPTSEAVETQGADSEANAGETADIEA
PVTVSVVRDEADQSTLLVAQVTEEAPFASESVESREDAESAVQPATEAAEEVAAPAPVEVAAPSEPAATEEP
TPAIAAVPANATGRALNDPREKRRLQREAERLAREAAAAAEAAAQAAPAVEETPAVASEEASAQEEPAAPQA
EEIAQADVPSQADEAQEAVQAEPEASGEDAADTEHAKKTEESETSRPHA*
AnnotationID:72GeneID:62
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 07:07:15
Gene Name:rne
Confidence Code:2
GeneProduct:ribonuclease E
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1530
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67524.1|AE016381_1 (AE016781) ribonuclease E [Pseudomonas putida KT2440]
          Length = 1091

 Score = 1264 bits (3270), Expect = 0.0
 Identities = 745/1098 (67%), Positives = 808/1098 (73%), Gaps = 115/1098 (10%)

>gb|AAO57308.1| (AE016869) ribonuclease, Rne/Rng family protein [Pseudomonas syringae
            pv. tomato str. DC3000]
          Length = 1128

 Score = 1209 bits (3128), Expect = 0.0
 Identities = 717/1128 (63%), Positives = 794/1128 (70%), Gaps = 131/1128 (11%)

Structural Features:
COG1530, CafA, Ribonucleases G and E 
[Translation, ribosomal structure and biogenesis]
CD-Length = 487 residues,  99.8% aligned
Score =  516 bits (1330), Expect = 6e-147
Identities = 286/490 (58%), Positives = 350/490 (71%), Gaps = 6/490 (1%)

Genomic Context:
Comment:
ReferenceID:127
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17269
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36076
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:62_cdd.html
URL:
ReferenceID:36447
Author/Investigator(s): Chauhan AK, Miczak A, Taraseviciene L, Apirion D.
Title: Sequencing and expression of the rne gene of Escherichia coli.
PubMed: 2011493
MedLine:
Source:
Nucleic Acids Res. 1991 Jan 11;19(1):125-9.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2011493
Homologs By Global Alignment
Gene ID:62

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
121 PA2976_tr translation of PA2976 1057 99.33 99.33 0 5204.0
12795 gb|AAG06364.1|AE004723_8 (AE004723) ribonuclease E [Pseudomonas aeruginosa PAO1] 1057 99.33 99.33 0 5204.0
12796 gb|AAN67524.1|AE016381_1 (AE016781) ribonuclease E [Pseudomonas putida KT2440] 1164 65.37 70.96 180 3367.0
12797 gb|AAO57308.1| (AE016869) ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv. tomato str. DC3000] 1203 61.09 67.33 221 3244.0
12798 gb|AAQ59494.1| (AE016916) probable ribonuclease E [Chromobacterium violaceum ATCC 12472] 1090 47.98 60.45 142 2211.0
GC ORFID: 43064How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2976Glimmer Score:
Start: 2717478Stop: 2720651
Length: 3174
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2976 translation of PA2976Homolog Bit Score 2009.0
Other Homologs: t_PA2976 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAAGAATGCTGATCAACGCGACTCAACCCGAGGAGTTGCGTGTTGCACTGGTCGACGGCCAACGCCTG
TTCGACCTCGACATCGAGTCGGGCGCCCGCGAGCAGAAGAAGGCCAACATCTACAAAGGCCGCATCACTCGC
GTCGAACCCAGCCTCGAAGCCGCCTTCGTCGACTTCGGCGCCGAACGCCACGGCTTCCTCCCCCTCAAAGAA
ATCTCCCGCGAATACTTCAAGAAATCCCCCGAAGGCCGGATCAACATCAAGGAAGTCCTGAGCGAAGGCCAG
GAAGTCATCGTCCAGGTCGAGAAGGAAGAGCGCGGCAACAAGGGCGCCGCCCTGACCACCTTCATCAGCCTG
GCCGGCCGTTACCTGGTGCTGATGCCGAACAACCCGCGCGCCGGCGGCATCTCCCGTCGTATCGAAGGCGAA
GAACGCAACGAGCTGCGCGAGGCCCTGAACGGCCTCAACGCACCGGCCGACATGGGCCTGATCGTGCGCACC
GCCGGCCTCGGCCGCAGCACCGAGGAACTGCAGTGGGACCTCGACTACCTGCTGCAACTGTGGAGCGCGATC
AAGGAAGCGTCCGGCGAACGTGGCGCGCCCTTCCTGATCTACCAGGAAAGCAACGTCATCATCCGCGCCATC
CGCGACTACCTGCGCCAGGACATCGGCGAAGTGCTGATCGACAGCATCGACGCCCAGGAAGAAGCCCTGAAC
TTCATCCGCCAGGTGATGCCGCAGTACGCCAGCAAGGTGAAGCTGTACCAGGACAGCGTTCCGCTGTTCAAT
CGCTTCCAGATCGAGAGCCAGATCGAGACCGCTTTCCAGCGCGAAGTGAAGCTGCCGTCCGGCGGCTCCATC
GTCATCGACCCGACCGAGGCCCTGGTTTCCATCGACATCAACTCGGCGCGCGCCACCAAGGGCGGCGACATC
GAGGAAACCGCCCTGCAGACCAACCTGGAAGCGGCCGAGGAAATCGCCCGCCAGCTGCGCCTGCGTGACATC
GGTGGCCTGATCGTCATCGACTTCATCGACATGACCCCGGCGAAGAACCAGCGCGCCGTGGAAGAGCGTGTC
CGCGAAGCCCTCGAGGCCGATCGCGCGCGCGTCCAGGTCGGTCGCATCTCGCGCTTCGGCCTGCTGGAAATG
TCCCGCCAGCGCCTGCGTCCGTCCCTCGGCGAGACCAGCGGCATCGTCTGCCCGCGCTGCAACGGCCAGGGC
ATCATCCGCGACGTCGAGTCGCTGTCGCTGGCCATCCTGCGCCTGATCGAGGAAGAAGCCCTGAAGGACCGC
ACCGCGGAAGTCCGCGCCCGCGTGCCCTTCCAGGTCGCCGCCTTCCTGCTCAACGAGAAGCGCAACGCCATC
ACCAAGATCGAACTGCGCACCCGCGCGCGCATCTTCATCCTGCCGGACGATCATCTGGAAACCCCGCATTTC
GAAGTCCAGCGTCTGCGCGATGACAGCCCCGAACTGGTTGCCGGCCAGACCAGCTACGAAATGGCCACCGTC
GAGCACGAAGAAGCCCAGCCGGTCAGCTCGACCCGCACCCTGGTCCGCCAGGAAGCAGCAGTCAAGACCGTC
GCTCCCCAGCAGCCCGCACCGCAACACACCGAAGCACCGGTCGAGCCGGCCAAGCCGATGCCCGAGCCGAGC
CTGTTCCAGGGCCTGGTGAAGTCCCTGGTCGGCCTGTTCGCAGGCAAGGATCAACCTGCCGCCAAGCCTGCT
GAAACCAGCAAGCCGGCTGCCGAGCGCCAAACCCGCCAGGACGAGCGTCGCAACGGCCGCCAGCAGAACCGC
CGCCGCGATGGCCGCGATGGCAATCGCCGCGACGAAGAGCGCAAGCCCCGCGAGGAACGCGCAGAGCGCCAA
CCGCGCGAAGAGCGCGCCGAACGCCCGAACCGCGAAGAGCGCAGCGAACGCCGCCGCGAAGAGCGCGCCGAG
CGCCCGGCTCGCGAGGAGCGCCAGCCGCGCGAAGGCCGTGAAGAGCGCGCCGAGCGGACGCCCCGCGAAGAA
CGCCAGCCGCGCGAAGGCCGCGAAGGTCGCGAGGAACGCAGCGAACGCCGCCGCGAAGAGCGCGCCGAACGC
CCGGCTCGCGAAGAGCGCCAACCCCGCGAAGGCCGTGAAGAACGCGCCGAGCGCCCGGCCCGCGAAGAGCGC
CAGCCGCGCGAGGATCGCCAGGCTCGCGACGCCGCGGCCCTGGAAGCCGAGGCGCTGCCGAACGACGAGAGC
CTGGAGCAGGACGAGCAGGACGATACCGATGGCGAGCGCCCGCGCCGCCGCTCCCGCGGCCAGCGTCGTCGC
AGCAACCGCCGCGAACGCCAGCGCGAGGTCAGCGGCGAGCTGGAAGGCAGCGAGGCGACCGATAACGCCGCC
GCGCCGCTGAACACCGTCGCAGCCGCCGCTGCTGCCGGTATCGCTGTCGCCAGCGAAGCCGTAGAAGCAAAC
GTGGAGCAAGCCCCGGCCACTACCAGCGAGGCTGCCAGCGAAACCACGGCAAGCGATGAAACCGACGCGCCG
ACCAGCGAAGCCGTGGAAACCCAGGGCGCGGACAGCGAGGCCAATGCCGGCGAAACCGCCGACATCGAAGCG
CCGGTGACCGTCAGCGTGGTCCGGGACGAAGCCGACCAGAGCACCCTGCTGGTCGCGCAAGTCACTGAAGAA
GCTCCCTTCGCCAGCGAAAGCGTGGAAAGCCGCGAAGACGCCGAGAGCGCCGTGCAACCGGCAACGGAAGCG
GCCGAAGAAGTTGCCGCCCCGGCGCCCGTCGAGGTAGCAGCCCCTAGCGAGCCCGCAGCCACCGAGGAGCCG
ACCCCGGCCATCGCGGCGGTGCCGGCCAACGCGACTGGCCGTGCCCTCAACGACCCACGGGAAAAACGTCGC
CTGCAACGCGAAGCCGAGCGTCTGGCACGCGAAGCCGCAGCAGCAGCCGAAGCGGCAGCTCAGGCCGCTCCC
GCCGTCGAGGAGACCCCAGCTGTAGCGAGCGAGGAAGCGTCGGCCCAGGAGGAACCTGCTGCACCCCAGGCT
GAAGAAATCGCCCAGGCCGACGTTCCGTCTCAGGCGGACGAAGCCCAGGAAGCGGTACAGGCCGAGCCTGAA
GCTTCCGGCGAAGACGCCGCCGACACAGAGCACGCGAAAAAGACCGAGGAAAGCGAAACCTCGCGCCCGCAT
GCCTGA