ViewGene
Locus Name:
GeneID:
Location:

GeneID:619
TrivialName: PA14_58390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58390
PAO1 Ortholog Locus:PA4500
Sequence Length:1602
Protein Length:533
Start: 5200657
Stop: 5202258
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07888.1|AE004863_8 (AE004863) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 529/533 (99%), Positives = 531/533 (99%)
Sequence:
ATGCGTAAGATCCTTCCCCTTCGGGCCTGGCTGGCAGCCGGTCTGATCCTCGGCTCCCCGTTCTCCCACGCC
GCCAGCAACCTGGTGTTCTGCTCGGAGGGCAGCCCGGCCGGCTTCGATCCCGCCCAGTACACCACCGGCACC
GACTACGACGCGACCTCGGTCACCCTGTTCAACCGCCTCGTCCAGTTCGAGCGCGGCGGcacCCGGGCGATC
CCGGCCCTGGCGGAAAGCTGGGACATCGGCGACGACGGcaaGACCTACACCTTCCACCTgCgcAAGGGTGTG
AAGttccACAGCACCGACTACTTCAAGCCGACCCGCGAATTCAATGCCGACGACGTGCTGTTCACCTTCGAA
CGCATGCTCGACAAGAATCATCCGTTCCGCAAGGCCTACCCCACCGAGTTTCCCTACTTCACCGACATGGGC
CTGGACAAGAACATCGCCAGGGTCGAGAAGCTCGACGAGCACAGGGTGAAGTTCACCCTCAACGAGGTCGAC
GCGGCCTTCATCCAGAACCTGGCGATGGACGTCGCCTCGATCCAGTCCGCCGAGTACGCAGGGCAGTTGCTC
GAGGCCGGCAAGCCACAGCAGATCAACCAGAAGCCGATCGGCACCGGGCCTTTCATCCTGAGCCGCTACCAG
AAGGATGCGCAGATCCGCTTCAAGGGCAACAAGGACTACTGGAAACCCGAAGACGTGAAGATCGACAACCTG
ATCTTCTCGATCAACACCGACGCCGCGGTGCGCGCGCAGAAGCTCAAGGCCGGCGAGTGCCAGATCACCCTC
AACCCACGCCCCGCCGATCTCAAGGCCCTGCAGGAAGCGGCGAACCTGAAGGTGCCCTCGCAGCCAGGCTTC
AACCTCGGCTACATCGCCTACAACGTTACCCACAAGCCGTTCGACCAGCTCGAAGTACGCCAGGCGCTGGAC
ATGGCGGTGAACAAGCAGGCCATCATCGACGCTGTCTACCAGGGTGCCGGGCAACTGGCGGTGAACGGCATG
CCGCCGACCCAGTGGTCCTATGACGAAACCATCAAGGACGCCCCGTTCGATCCGGCCAAGGCCCGGGAACTG
CTGAAGAAGGCCGGCGTCGCCGAGGGCACCGAGATCACCCTGTGGGCGATGCCGGTGCAGCGTCCCTACAAC
CCCAACGCCAAGCTGATGGCGGAGATGATCCAGGCCGACTGGGCGAAGATCGGCATCAAGGCCAGGATCGTC
AGCTACGAGTGGGGCGAGTACATCAAGCGCGCCCATGCCGGCGAGCATGACGCCATGCTGTTCGGCTGGACC
GGCGACAACGGCGATCCGGACAACTGGCTGGCGACCCTCTACGGCTGCGACTCGATCAACGGCAACAACGTA
TCGAAATGGTGCGACGCGGCCTACGACAAGCTGGTCAAGGCTGCCAAGCGGGTCTCCGACCAGGACAAGCGC
AGCGAGCTGTACAAGCAGGCCCAGCACATCCTCAAGGAGCAGGTGCCGATCACCCCGATCGCCCACTCCACC
GTGTACCAGCCGATGAACAAGTCGGTGCATGACTTCAAGATCAGCCCCTTCTCGCGGAACGCCTTCTATGGC
GTAACCAACCAGCCCTGA
Translation:
MRKILPLRAWLAAGLILGSPFSHAASNLVFCSEGSPAGFDPAQYTTGTDYDATSVTLFNRLVQFERGGTRAI
PALAESWDIGDDGKTYTFHLRKGVKFHSTDYFKPTREFNADDVLFTFERMLDKNHPFRKAYPTEFPYFTDMG
LDKNIARVEKLDEHRVKFTLNEVDAAFIQNLAMDVASIQSAEYAGQLLEAGKPQQINQKPIGTGPFILSRYQ
KDAQIRFKGNKDYWKPEDVKIDNLIFSINTDAAVRAQKLKAGECQITLNPRPADLKALQEAANLKVPSQPGF
NLGYIAYNVTHKPFDQLEVRQALDMAVNKQAIIDAVYQGAGQLAVNGMPPTQWSYDETIKDAPFDPAKAREL
LKKAGVAEGTEITLWAMPVQRPYNPNAKLMAEMIQADWAKIGIKARIVSYEWGEYIKRAHAGEHDAMLFGWT
GDNGDPDNWLATLYGCDSINGNNVSKWCDAAYDKLVKAAKRVSDQDKRSELYKQAQHILKEQVPITPIAHST
VYQPMNKSVHDFKISPFSRNAFYGVTNQP*
AnnotationID:628GeneID:619
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 06:06:22
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transpor
Cell Localization:()
Synonyms:PA4500
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00496,COG0747,COG4166
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66510.1|AE016280_2 (AE016777) dipeptide ABC transporter, periplasmic peptide-binding
           protein [Pseudomonas putida KT2440]
          Length = 541

 Score =  842 bits (2176), Expect = 0.0
 Identities = 402/528 (76%), Positives = 457/528 (86%), Gaps = 8/528 (1%)

>gb|AAO58006.1| (AE016872) dipeptide ABC transporter, periplasmic dipeptide-binding
           protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 540








 
Structural Features:
pfam00496, SBP_bac_5, Bacterial extracellular solute-binding proteins, family 5.
CD-Length = 508 residues,  96.7% aligned
Score =  435 bits (1120), Expect = 1e-122
Identities = 185/506 (36%), Positives = 277/506 (54%), Gaps = 19/506 (3%)

COG0747, DdpA, ABC-type dipeptide transport system, periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 556 residues,  98.7% aligned
Score =  345 bits (886), Expect = 1e-95
Identities = 187/568 (32%), Positives = 266/568 (46%), Gaps = 54/568 (9%)

COG4166, OppA, ABC-type oligopeptide transport system,
periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 562 residues,  95.0% aligned
Score =  228 bits (583), Expect = 2e-60
Identities = 150/546 (27%), Positives = 236/546 (43%), Gaps = 52/546 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1241




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18383




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31543




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:619_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:619
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1050
                           PA4500_tr
                           translation of PA4500
                           533
                           99.24
                           99.62
                           0
                           2804.0
     

     
     
40744
                           gb|AAG07888.1|AE004863_8
                           (AE004863) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           533
                           99.24
                           99.62
                           0
                           2804.0
     

     
     
1051
                           PA4496_tr
                           translation of PA4496
                           540
                           82.22
                           89.44
                           10
                           2379.0
     

     
     
40745
                           gb|AAG07884.1|AE004863_4
                           (AE004863) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           540
                           82.22
                           89.44
                           10
                           2379.0
     

     
     
40746
                           gb|AAN66510.1|AE016280_2
                           (AE016777) dipeptide ABC transporter, periplasmic peptide-binding protein [Pseudomonas putida KT2440]
                           541
                           74.67
                           85.02
                           8
                           2175.0
     

     






      

          
GC ORFID: 43621How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4500Glimmer Score: 

          
Start: 4464335Stop: 4465936

          
Length: 1602


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4500 translation of PA4500Homolog Bit Score 1084.0

          
Other Homologs:  t_PA4496 (ORF: BLASTX 926.0), psyr_15may02_Scaffold4_revised_gene5611 (ORF: BLASTX 813.0), psyr_15may02_Scaffold4_revised_gene5610 (ORF: BLASTX 763.0), psyr_15may02_Scaffold4_revised_gene5612 (ORF: BLASTX 746.0), t_PA4502 (ORF: BLASTX 486.0), t_PA4497 (ORF: BLASTX 484.0), psyr_15may02_Scaffold4_revised_gene5615 (ORF: BLASTX 475.0), psyr_15may02_Scaffold2_revised_gene3930 (ORF: BLASTX 475.0), t_PA5317 (ORF: BLASTX 448.0), t_PA4500 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTAAGATCCTTCCCCTTCGGGCCTGGCTGGCAGCCGGTCTGATCCTCGGCTCCCCGTTCTCCCACGCC 
GCCAGCAACCTGGTGTTCTGCTCGGAGGGCAGCCCGGCCGGCTTCGATCCCGCCCAGTACACCACCGGCACC 
GACTACGACGCGACCTCGGTCACCCTGTTCAACCGCCTCGTCCAGTTCGAGCGCGGCGGcacCCGGGCGATC 
CCGGCCCTGGCGGAAAGCTGGGACATCGGCGACGACGGcaaGACCTACACCTTCCACCTgCgcAAGGGTGTG 
AAGttccACAGCACCGACTACTTCAAGCCGACCCGCGAATTCAATGCCGACGACGTGCTGTTCACCTTCGAA 
CGCATGCTCGACAAGAATCATCCGTTCCGCAAGGCCTACCCCACCGAGTTTCCCTACTTCACCGACATGGGC 
CTGGACAAGAACATCGCCAGGGTCGAGAAGCTCGACGAGCACAGGGTGAAGTTCACCCTCAACGAGGTCGAC 
GCGGCCTTCATCCAGAACCTGGCGATGGACGTCGCCTCGATCCAGTCCGCCGAGTACGCAGGGCAGTTGCTC 
GAGGCCGGCAAGCCACAGCAGATCAACCAGAAGCCGATCGGCACCGGGCCTTTCATCCTGAGCCGCTACCAG 
AAGGATGCGCAGATCCGCTTCAAGGGCAACAAGGACTACTGGAAACCCGAAGACGTGAAGATCGACAACCTG 
ATCTTCTCGATCAACACCGACGCCGCGGTGCGCGCGCAGAAGCTCAAGGCCGGCGAGTGCCAGATCACCCTC 
AACCCACGCCCCGCCGATCTCAAGGCCCTGCAGGAAGCGGCGAACCTGAAGGTGCCCTCGCAGCCAGGCTTC 
AACCTCGGCTACATCGCCTACAACGTTACCCACAAGCCGTTCGACCAGCTCGAAGTACGCCAGGCGCTGGAC 
ATGGCGGTGAACAAGCAGGCCATCATCGACGCTGTCTACCAGGGTGCCGGGCAACTGGCGGTGAACGGCATG 
CCGCCGACCCAGTGGTCCTATGACGAAACCATCAAGGACGCCCCGTTCGATCCGGCCAAGGCCCGGGAACTG 
CTGAAGAAGGCCGGCGTCGCCGAGGGCACCGAGATCACCCTGTGGGCGATGCCGGTGCAGCGTCCCTACAAC 
CCCAACGCCAAGCTGATGGCGGAGATGATCCAGGCCGACTGGGCGAAGATCGGCATCAAGGCCAGGATCGTC 
AGCTACGAGTGGGGCGAGTACATCAAGCGCGCCCATGCCGGCGAGCATGACGCCATGCTGTTCGGCTGGACC 
GGCGACAACGGCGATCCGGACAACTGGCTGGCGACCCTCTACGGCTGCGACTCGATCAACGGCAACAACGTA 
TCGAAATGGTGCGACGCGGCCTACGACAAGCTGGTCAAGGCTGCCAAGCGGGTCTCCGACCAGGACAAGCGC 
AGCGAGCTGTACAAGCAGGCCCAGCACATCCTCAAGGAGCAGGTGCCGATCACCCCGATCGCCCACTCCACC 
GTGTACCAGCCGATGAACAAGTCGGTGCATGACTTCAAGATCAGCCCCTTCTCGCGGAACGCCTTCTATGGC 
GTAACCAACCAGCCCTGA