ViewGene
Locus Name:
GeneID:
Location:

GeneID:618
TrivialName: PA14_17690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17690
PAO1 Ortholog Locus:PA3602
Sequence Length:1611
Protein Length:536
Start: 1521744
Stop: 1520134
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06990.1|AE004780_9 (AE004780) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 536/536 (100%), Positives = 536/536 (100%)
Sequence:
ATGAATCTGTCGCTACTCAGTCGCTATGCGTTTTTCGCCTGTATCGCCCTGTTCACCTTGCTCAGCCTGCCG
TTCCTCGGCAGCACCGAATGGCTCTGGCCGTTCACCCTCCTGGGCGTGGCCCTGAGCCTGCTCGGCCTGTTC
GACCTGATCCAGACGCCCCACGCGGTGCGCCGCAACTATCCGATCCTGGGCAACATCCGCTATCTGGTGGAA
GGCATCCGCCCGGAGATCCGCCAGTACCTGCTGGAAGCCGACGGCGACGCCCTGCCCTTCTCCCGCGCCCAG
CGCTCGCTGGTCTACTCGCGGGCGAAGAACGAAAGCTCGGAGAAGCCCTTCGGCACCCTGATCGACGTGTAC
ACCGCCGGCTACGAATTCATCAGCCACTCGATGCGTCCGGCGCCGCTCAGCGATCCCTGCGAGTTCCGCGTC
GACATCGGCGGGCCGCAATGCAGCAAGCCGTACTCCGCTTCGCTGTTCAACGTCTCGGCGATGAGTTTCGGC
GCCCTCAGCGCCAACGCCATTCGCTCGCTGAACCGTGGCGCGCAGATGGGCAACTTCTACCACGACACCGGC
GAGGGCAGCATCAGCCCCTATCACCGCGAGAACGGCGGCGACCTGGTCTGGGAACTGGGCAGCGGCTACTTC
GGGTGCCGCACCCGCGATGGCAAGTTCGACCCTGAGCGCTTCGCCGCCCAGGCCCTCGACCCGCAGGTGAAG
ATGATCGAGaTcaaGCTCAGCCAGGGCGCCAAGCCGGGACACGGCGGTATCCTGCCCAaGcACAAGGTCACC
CCCGAGATCGCCGCCACCCGTGGCGTGCCGATGGGTGAGGATTGCGTTTCGCCGTCGCGCCaCAGCGCCTTC
TCCACGCCGATCGAGCTGATGCAGTTCATCGCCCAGCTGCGCGAACTGTCCGGCGGCAAGCCGGTCGGCTTC
AAGTTCTGCCTGGGCCATCCATGGGAGTTCATGGGCATCGCCAAGGCCATGCTGGAGACCGGCATCCTCCCC
GACTTCATCGTCGTCGACGGCAAGGAAGGCGGCACCGGCGCGGCGCCGCTGGAGTTCACCGACCATATCGGC
GTGCCGCTGCGCGAAGGCCTGCTGTTCGTCCACAACACCCTGGTCGGCCTCAACCTGCGCGACAAGATCAAG
GTCGGCGCCAGCGGCAAGATCGTCAGCGCCTTCGATATCGCCAGCGTCCTGGCCACCGGCGCGGATTGGGCC
AACTCGGCGCGCGGCTTCATGTTCGCCATCGGCTGCATCCAGTCGCAGAGCTGCCATACCAACAAGTGCCCG
ACCGGCGTCGCCACCCAGGACCCGCTGCGCCAGCGCGCGCTGGTGGTGCCGGACAAGGCCGAGCGGGTGCGC
AACTTCCATCGCAACACCCTCAAGGGCCTGGCCGAGATGCTCGCCGCGGCGGGCCTGGAACATCCCTCGCAG
CTCGAAGCCAAGCACCTGGTGCGACGCATCACCGACACCGAGATCCGCCTGTTCTCGCAGCTGCACTACTTC
CTCAAGCCGGGCGAACTGCTTTCCGGCAAGATCGAGGGCGAGTTCTACGAGCGCATGTGGAACATGGCGCGG
GCCGACAGCTTCGACGCGGCGGCCTGA
Translation:
MNLSLLSRYAFFACIALFTLLSLPFLGSTEWLWPFTLLGVALSLLGLFDLIQTPHAVRRNYPILGNIRYLVE
GIRPEIRQYLLEADGDALPFSRAQRSLVYSRAKNESSEKPFGTLIDVYTAGYEFISHSMRPAPLSDPCEFRV
DIGGPQCSKPYSASLFNVSAMSFGALSANAIRSLNRGAQMGNFYHDTGEGSISPYHRENGGDLVWELGSGYF
GCRTRDGKFDPERFAAQALDPQVKMIEIKLSQGAKPGHGGILPKHKVTPEIAATRGVPMGEDCVSPSRHSAF
STPIELMQFIAQLRELSGGKPVGFKFCLGHPWEFMGIAKAMLETGILPDFIVVDGKEGGTGAAPLEFTDHIG
VPLREGLLFVHNTLVGLNLRDKIKVGASGKIVSAFDIASVLATGADWANSARGFMFAIGCIQSQSCHTNKCP
TGVATQDPLRQRALVVPDKAERVRNFHRNTLKGLAEMLAAAGLEHPSQLEAKHLVRRITDTEIRLFSQLHYF
LKPGELLSGKIEGEFYERMWNMARADSFDAAA*
AnnotationID:627GeneID:618
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 13:01:29
Gene Name:
Confidence Code:3
GeneProduct:putative glutamate synthase, large subunit
Cell Localization:()
Synonyms:PA3602
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0069,pfam01645
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66685.1|AE016296_5 (AE016778) glutamate synthase, large subunit, putative [Pseudomonas
           putida KT2440]
          Length = 539

 Score =  939 bits (2428), Expect = 0.0
 Identities = 456/533 (85%), Positives = 496/533 (93%), Gaps = 1/533 (0%)

>emb|CAE43780.1| (BX640421) putative membrane protein [Bordetella pertussis]
          Length = 553

 Score =  704 bits (1816), Expect = 0.0
 Identities = 347/536 (64%), Positives = 409/536 (76%), Gaps = 10/536 (1%)

>dbj|BAC68942.1| (AP005026) putative glutamate synthase(ferredoxin) [Streptomyces
           avermitilis MA-4680]
          Length = 531

 Score =  524 bits (1349), Expect = e-148
 Identities = 262/505 (51%), Positives = 343/505 (67%), Gaps = 5/505 (0%)








 
Structural Features:
COG0069, GltB, Glutamate synthase domain 2 
[Amino acid transport and metabolism] 
CD-Length = 485 residues,  99.8% aligned
Score =  458 bits (1181), Expect = 1e-129
Identities = 151/503 (30%), Positives = 202/503 (40%), Gaps = 50/503 (9%)

pfam01645, Glu_synthase, Conserved region in glutamate synthase
CD-Length = 368 residues,  81.8% aligned
Score =  263 bits (673), Expect = 9e-71
Identities = 119/320 (37%), Positives = 160/320 (50%), Gaps = 22/320 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1239




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18381




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31939




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:618_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:618
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1049
                           PA3602_tr
                           translation of PA3602
                           536
                           99.99
                           99.99
                           0
                           2804.0
     

     
     
40727
                           gb|AAG06990.1|AE004780_9
                           (AE004780) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           536
                           99.99
                           99.99
                           0
                           2804.0
     

     
     
40728
                           gb|AAN66685.1|AE016296_5
                           (AE016778) glutamate synthase, large subunit, putative [Pseudomonas putida KT2440]
                           540
                           84.44
                           92.03
                           5
                           2428.0
     

     
     
40729
                           gb|AAN65900.1|AE016218_2
                           (AE016775) glutamate synthase, large subunit, putative [Pseudomonas putida KT2440]
                           555
                           74.59
                           81.98
                           19
                           2194.0
     

     
     
40730
                           emb|CAD16429.1|
                           (AL646071) PUTATIVE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
                           537
                           63.87
                           77.83
                           6
                           1834.0
     

     






      

          
GC ORFID: 43620How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3602Glimmer Score: 

          
Start: 3432192Stop: 3433802

          
Length: 1611


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3602 translation of PA3602Homolog Bit Score 1084.0

          
Other Homologs:  t_PA3602 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCTGTCGCTACTCAGTCGCTATGCGTTTTTCGCCTGTATCGCCCTGTTCACCTTGCTCAGCCTGCCG 
TTCCTCGGCAGCACCGAATGGCTCTGGCCGTTCACCCTCCTGGGCGTGGCCCTGAGCCTGCTCGGCCTGTTC 
GACCTGATCCAGACGCCCCACGCGGTGCGCCGCAACTATCCGATCCTGGGCAACATCCGCTATCTGGTGGAA 
GGCATCCGCCCGGAGATCCGCCAGTACCTGCTGGAAGCCGACGGCGACGCCCTGCCCTTCTCCCGCGCCCAG 
CGCTCGCTGGTCTACTCGCGGGCGAAGAACGAAAGCTCGGAGAAGCCCTTCGGCACCCTGATCGACGTGTAC 
ACCGCCGGCTACGAATTCATCAGCCACTCGATGCGTCCGGCGCCGCTCAGCGATCCCTGCGAGTTCCGCGTC 
GACATCGGCGGGCCGCAATGCAGCAAGCCGTACTCCGCTTCGCTGTTCAACGTCTCGGCGATGAGTTTCGGC 
GCCCTCAGCGCCAACGCCATTCGCTCGCTGAACCGTGGCGCGCAGATGGGCAACTTCTACCACGACACCGGC 
GAGGGCAGCATCAGCCCCTATCACCGCGAGAACGGCGGCGACCTGGTCTGGGAACTGGGCAGCGGCTACTTC 
GGGTGCCGCACCCGCGATGGCAAGTTCGACCCTGAGCGCTTCGCCGCCCAGGCCCTCGACCCGCAGGTGAAG 
ATGATCGAGaTcaaGCTCAGCCAGGGCGCCAAGCCGGGACACGGCGGTATCCTGCCCAaGcACAAGGTCACC 
CCCGAGATCGCCGCCACCCGTGGCGTGCCGATGGGTGAGGATTGCGTTTCGCCGTCGCGCCaCAGCGCCTTC 
TCCACGCCGATCGAGCTGATGCAGTTCATCGCCCAGCTGCGCGAACTGTCCGGCGGCAAGCCGGTCGGCTTC 
AAGTTCTGCCTGGGCCATCCATGGGAGTTCATGGGCATCGCCAAGGCCATGCTGGAGACCGGCATCCTCCCC 
GACTTCATCGTCGTCGACGGCAAGGAAGGCGGCACCGGCGCGGCGCCGCTGGAGTTCACCGACCATATCGGC 
GTGCCGCTGCGCGAAGGCCTGCTGTTCGTCCACAACACCCTGGTCGGCCTCAACCTGCGCGACAAGATCAAG 
GTCGGCGCCAGCGGCAAGATCGTCAGCGCCTTCGATATCGCCAGCGTCCTGGCCACCGGCGCGGATTGGGCC 
AACTCGGCGCGCGGCTTCATGTTCGCCATCGGCTGCATCCAGTCGCAGAGCTGCCATACCAACAAGTGCCCG 
ACCGGCGTCGCCACCCAGGACCCGCTGCGCCAGCGCGCGCTGGTGGTGCCGGACAAGGCCGAGCGGGTGCGC 
AACTTCCATCGCAACACCCTCAAGGGCCTGGCCGAGATGCTCGCCGCGGCGGGCCTGGAACATCCCTCGCAG 
CTCGAAGCCAAGCACCTGGTGCGACGCATCACCGACACCGAGATCCGCCTGTTCTCGCAGCTGCACTACTTC 
CTCAAGCCGGGCGAACTGCTTTCCGGCAAGATCGAGGGCGAGTTCTACGAGCGCATGTGGAACATGGCGCGG 
GCCGACAGCTTCGACGCGGCGGCCTGA