ViewGene
Locus Name:
GeneID:
Location:

GeneID:6175
TrivialName: PA14_27650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27650
PAO1 Ortholog Locus:
Sequence Length:546
Protein Length:181
Start: 2397391
Stop: 2396846
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN62216.1|AF440524_3 (AF440524) hypothetical protein [Pseudomonas aeruginosa]
Identities = 180/181 (99%), Positives = 180/181 (99%)
Sequence:
ATGTCGATCTCGGAAGAATTGGGAAGGAATCTGGTCCAGCTGGCGCAACGCTGGCTGAAACGCCCCCTCACC
AGCGAAGAACACGAGCAGTTGAGACAGTTCCAGCTCGGCCTCGGCAACGACGCCAGCAGCGATCCGGCCGTG
CACGCGCGACAGCAGGCCGAACAGGTGATCGAGAACGGCCGGCAGCGTTCCGAAGGCTCCATCCGCCAGATC
CTGCAGAACGTCCAGCAGGCCTCGACCCAGGCCCTCCGCGCCCAGGACAGCGGCGAGCAGGCGATTCTCGAG
GCGGTCAATGCCGCCGGCAGCCTGGCCGAACTGCGTCCCGGCCACCTGCAGAGCGGCCAGGCAAGCGCCAAC
CAGTTGGTGATGTCGCAGATTGCCGACCGCCTGGCCAACCTAGTGAAGAGCGAGGTACGCCTGTGCTTCGAG
CAGAACTTCGGCTCGCTCAAGCAGCAACTGGAGAACGCTATCGCCATCTTCAACCAGAGCAACCACAACACG
TCCGCACCGCCGCCGGACAAGCCCGACCCGCCCGCCGCATGA
Translation:
MSISEELGRNLVQLAQRWLKRPLTSEEHEQLRQFQLGLGNDASSDPAVHARQQAEQVIENGRQRSEGSIRQI
LQNVQQASTQALRAQDSGEQAILEAVNAAGSLAELRPGHLQSGQASANQLVMSQIADRLANLVKSEVRLCFE
QNFGSLKQQLENAIAIFNQSNHNTSAPPPDKPDPPAA*
AnnotationID:6176GeneID:6175
AnnotatorUID: danlee
Modification Date/Time: 2005-10-13 13:01:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|24461647|gb|AAN62216.1|  hypothetical protein [Pseudomonas aeruginosa]
gi|24461637|gb|AAN62208.1|  hypothetical protein [Pseudomonas aeruginosa]
     Length=181
     Score =  349 bits (895),  Expect = 3e-95
     Identities = 180/181 (99%), Positives = 180/181 (99%), Gaps = 0/181 (0%)

gi|34102034|gb|AAQ58401.1|  hypothetical protein CV0725 [Chromobacterium violaceum ATCC 12472]
     Length=191
     Score =  110 bits (275),  Expect = 2e-23
     Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 9/155 (5%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
Corresponds to ORFC/SG114 of P. aeruginosa strains SG17M and Clone C strain C.


















    ReferenceID:12206




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29468




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38208




  
Author/Investigator(s):
        Larbig KD, Christmann A, Johann A, Klockgether J, Hartsch T, Merkl R, Wiehlmann L, Fritz HJ, Tummler B.





  
Title:
        Gene islands integrated into tRNA(Gly) genes confer genome diversity on a Pseudomonas aeruginosa clone.




  
PubMed:
        12426355


MedLine:
        




    
Source:
J Bacteriol. 2002 Dec;184(23):6665-80.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6175
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198614
                           gb|AAN62216.1|AF440524_3
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           181
                           99.44
                           99.44
                           0
                           895.0
     

     
     
198615
                           gb|AAN62208.1|AF440523_115
                           (AF440523) hypothetical protein [Pseudomonas aeruginosa]
                           181
                           99.44
                           99.44
                           0
                           895.0
     

     
     
198616
                           gb|AAQ58401.1|
                           (AE016912) hypothetical protein CV0725 [Chromobacterium violaceum ATCC 12472]
                           200
                           35.50
                           50.00
                           28
                           285.0
     

     






      

          
GC ORFID: 49177How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2556536Stop: 2557081

          
Length: 546


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTCGATCTCGGAAGAATTGGGAAGGAATCTGGTCCAGCTGGCGCAACGCTGGCTGAAACGCCCCCTCACC 
AGCGAAGAACACGAGCAGTTGAGACAGTTCCAGCTCGGCCTCGGCAACGACGCCAGCAGCGATCCGGCCGTG 
CACGCGCGACAGCAGGCCGAACAGGTGATCGAGAACGGCCGGCAGCGTTCCGAAGGCTCCATCCGCCAGATC 
CTGCAGAACGTCCAGCAGGCCTCGACCCAGGCCCTCCGCGCCCAGGACAGCGGCGAGCAGGCGATTCTCGAG 
GCGGTCAATGCCGCCGGCAGCCTGGCCGAACTGCGTCCCGGCCACCTGCAGAGCGGCCAGGCAAGCGCCAAC 
CAGTTGGTGATGTCGCAGATTGCCGACCGCCTGGCCAACCTAGTGAAGAGCGAGGTACGCCTGTGCTTCGAG 
CAGAACTTCGGCTCGCTCAAGCAGCAACTGGAGAACGCTATCGCCATCTTCAACCAGAGCAACCACAACACG 
TCCGCACCGCCGCCGGACAAGCCCGACCCGCCCGCCGCATGA