ViewGene
Locus Name:
GeneID:
Location:

GeneID:6174
TrivialName: PA14_27660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27660
PAO1 Ortholog Locus:
Sequence Length:240
Protein Length:79
Start: 2397684
Stop: 2397445
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN62217.1|AF440524_4 (AF440524) hypothetical protein [Pseudomonas aeruginosa]
Identities = 78/79 (98%), Positives = 78/79 (98%)
Sequence:
ATGAAGGAAGAACTCGAAACCCTCGTCACCCAGGTCAAGGCACTCCTCACCGAATGCCTGCAAGGCTGGCTC
CAGGCCCTGTCCCAGGGAGACAGCGTGGACGACCCGGCCAGCCTCGGACAGTTGGCGGTGCAGTTGAGCACC
GCCTACAGCACCCTGCAGGCCGCTGCCGCCGCCTACCCCGGCGATACCGGCAGCAGCGCGCAGGCCCCCTCG
GCGGACGGCACGCAGCAGTACTGA
Translation:
MKEELETLVTQVKALLTECLQGWLQALSQGDSVDDPASLGQLAVQLSTAYSTLQAAAAAYPGDTGSSAQAPS
ADGTQQY*
AnnotationID:6175GeneID:6174
AnnotatorUID: danlee
Modification Date/Time: 2005-10-13 14:02:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|24461648|gb|AAN62217.1|  hypothetical protein [Pseudomonas aeruginosa]
gi|24461638|gb|AAN62209.1|  hypothetical protein [Pseudomonas aeruginosa]
     Length=79
     Score =  154 bits (388),  Expect = 1e-36
     Identities = 78/79 (98%), Positives = 78/79 (98%), Gaps = 0/79 (0%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
Corresponds to ORFC/SG115 of P. aeruginosa strains SG17M and Clone C strain C.


















    ReferenceID:12204




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29465




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38211




  
Author/Investigator(s):
        Larbig,K.D., Christmann,A., Johann,A., Klockgether,J., Hartsch,T., Merkl,R., Wiehlmann,L., Fritz,H.J. and Tummler,B.





  
Title:
        Gene Islands Integrated into tRNA(Gly) Genes Confer Genome Diversity on a Pseudomonas aeruginosa Clone.




  
PubMed:
        12426355


MedLine:
        




    
Source:
J. Bacteriol. 184 (23), 6665-6680 (2002)







    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6174
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198612
                           gb|AAN62217.1|AF440524_4
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           79
                           98.73
                           98.73
                           0
                           388.0
     

     
     
198613
                           gb|AAN62209.1|AF440523_116
                           (AF440523) hypothetical protein [Pseudomonas aeruginosa]
                           79
                           98.73
                           98.73
                           0
                           388.0
     

     






      

          
GC ORFID: 49176How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2556243Stop: 2556482

          
Length: 240


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAGGAAGAACTCGAAACCCTCGTCACCCAGGTCAAGGCACTCCTCACCGAATGCCTGCAAGGCTGGCTC 
CAGGCCCTGTCCCAGGGAGACAGCGTGGACGACCCGGCCAGCCTCGGACAGTTGGCGGTGCAGTTGAGCACC 
GCCTACAGCACCCTGCAGGCCGCTGCCGCCGCCTACCCCGGCGATACCGGCAGCAGCGCGCAGGCCCCCTCG 
GCGGACGGCACGCAGCAGTACTGA