ViewGene

Locus Name:
GeneID:
Location:

GeneID:6172
TrivialName: PA14_27680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27680
PAO1 Ortholog Locus:
Sequence Length:633
Protein Length:210
Start: 2400737
Stop: 2400105
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN62219.1|AF440524_6 (AF440524) hypothetical protein [Pseudomonas aeruginosa]
Identities = 208/210 (99%), Positives = 208/210 (99%), Gaps = 2/210 (0%)
Sequence:
ATGTTCGGCTTCGGCAAGAAATCCGCGCCCGCGCCCGCGCCATCCGGCGACAGCGAGCAAGCCGCCGCCCCC
GGCGAGGCCGGCCGGCAGACGCCAGCCAGCGGCGGCAGGGCGTCCGCCAACGGCGACGTGAAGCTGCCGTCG
CGCCCTTCGCCGCTGGCCGGCATGAGCGAGCGCCTGCTCAAGCAGACCGAGGCGCCGCCGCCGGACACCAGC
GCCCTGAACAGTCAAGTCGTGCAGGCGGTGCAGATGAGCAACAGCGAAACCGCCGGCTATGCGCCGTCGCAG
ATCGCCATCGCGCCGAACATGATGATCAGCCAGGCCTCCGGGCTGGTGGCGCAATCCGCCGCCAGCTACTTC
GACGGAGTCAGCAAGATCGCCCTGGCCAGCCAGGCGATCCTGCTCCGGCAGATGACCCAGAACATCGCCGAA
AACAAGCTGGCCCAGGCTGCCGAGGACGCGCTCGGCGCCCTCGCCACCGACCTGCTGATGGGCGCCGCCGCC
GCGGTAGCCGCGGCGGCCGGGGCGATCGAGGCGGAATCGGCCAGCTTCGCCATCGACAAGATCGACCAGAGC
ATCGCCAAGTACAGCGAGACCCTCGCCAGTCGCGGCGGCAAGGACACCCAATCGTAG
Translation:
MFGFGKKSAPAPAPSGDSEQAAAPGEAGRQTPASGGRASANGDVKLPSRPSPLAGMSERLLKQTEAPPPDTS
ALNSQVVQAVQMSNSETAGYAPSQIAIAPNMMISQASGLVAQSAASYFDGVSKIALASQAILLRQMTQNIAE
NKLAQAAEDALGALATDLLMGAAAAVAAAAGAIEAESASFAIDKIDQSIAKYSETLASRGGKDTQS*
AnnotationID:6173GeneID:6172
AnnotatorUID: danlee
Modification Date/Time: 2005-10-13 14:02:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|24461650|gb|AAN62219.1|  hypothetical protein [Pseudomonas aeruginosa]
gi|24461640|gb|AAN62211.1|  hypothetical protein [Pseudomonas aeruginosa]
     Length=208
     Score =  386 bits (991),  Expect = 3e-106
     Identities = 208/210 (99%), Positives = 208/210 (99%), Gaps = 2/210 (0%)

gi|70733687|ref|YP_257327.1|  hypothetical protein PFL_0181 [Pseudomonas fluorescens Pf-5]
gi|68347986|gb|AAY95592.1|  hypothetical protein PFL_0181 [Pseudomonas fluorescens Pf-5]
     Length=222
     Score =  213 bits (541),  Expect = 4e-54
     Identities = 125/218 (57%), Positives = 151/218 (69%), Gaps = 15/218 (6%)
Structural Features:
Genomic Context:
Comment:
Corresponds to ORFC/SG117 of P. aeruginosa strains SG17M and Clone C strain C.
ReferenceID:12200
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29461
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36224
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6172_cdd.html
URL:
ReferenceID:38213
Author/Investigator(s): Larbig,K.D., Christmann,A., Johann,A., Klockgether,J., Hartsch,T., Merkl,R., Wiehlmann,L., Fritz,H.J. and Tummler,B.
Title: Gene Islands Integrated into tRNA(Gly) Genes Confer Genome Diversity on a Pseudomonas aeruginosa Clone.
PubMed: 12426355
MedLine:
Source:
J. Bacteriol. 184 (23), 6665-6680 (2002)
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:6172

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198607 gb|AAN62219.1|AF440524_6 (AF440524) hypothetical protein [Pseudomonas aeruginosa] 210 99.04 99.04 2 993.0
198608 gb|AAN62211.1|AF440523_118 (AF440523) hypothetical protein [Pseudomonas aeruginosa] 210 99.04 99.04 2 993.0
198609 gb|AAQ58408.1| (AE016912) hypothetical protein CV0732 [Chromobacterium violaceum ATCC 12472] 221 49.77 61.08 28 484.0
GC ORFID: 49174How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2553190Stop: 2553822
Length: 633
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGTTCGGCTTCGGCAAGAAATCCGCGCCCGCGCCCGCGCCATCCGGCGACAGCGAGCAAGCCGCCGCCCCC
GGCGAGGCCGGCCGGCAGACGCCAGCCAGCGGCGGCAGGGCGTCCGCCAACGGCGACGTGAAGCTGCCGTCG
CGCCCTTCGCCGCTGGCCGGCATGAGCGAGCGCCTGCTCAAGCAGACCGAGGCGCCGCCGCCGGACACCAGC
GCCCTGAACAGTCAAGTCGTGCAGGCGGTGCAGATGAGCAACAGCGAAACCGCCGGCTATGCGCCGTCGCAG
ATCGCCATCGCGCCGAACATGATGATCAGCCAGGCCTCCGGGCTGGTGGCGCAATCCGCCGCCAGCTACTTC
GACGGAGTCAGCAAGATCGCCCTGGCCAGCCAGGCGATCCTGCTCCGGCAGATGACCCAGAACATCGCCGAA
AACAAGCTGGCCCAGGCTGCCGAGGACGCGCTCGGCGCCCTCGCCACCGACCTGCTGATGGGCGCCGCCGCC
GCGGTAGCCGCGGCGGCCGGGGCGATCGAGGCGGAATCGGCCAGCTTCGCCATCGACAAGATCGACCAGAGC
ATCGCCAAGTACAGCGAGACCCTCGCCAGTCGCGGCGGCAAGGACACCCAATCGTAG