ViewGene
Locus Name:
GeneID:
Location:

GeneID:6170
TrivialName: PA14_27700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27700
PAO1 Ortholog Locus:
Sequence Length:726
Protein Length:241
Start: 2402463
Stop: 2401738
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN62222.1|AF440524_9 (AF440524) putative transcriptional regulator [Pseudomonas aeruginosa]
Identities = 241/241 (100%), Positives = 241/241 (100%)
Sequence:
ATGCACTCGAACGAGTCAACGGAAGACCGCTGTTCACGCCACTACACCCTGCTGCAACGGTGCCCGCTGCTG
CACGGGCTGCCCGATCTGCTGCGGCACGTGGCGACCCATGCGTCGGAGCGCCGGTTGCGCGACAAGGACGTC
CTGTTCCTCAAGCACGACCCTGAAGACTTCATCGGCCTGGTCCTCGGCGGACACCTCTATACCGTGCTCTAC
GGGCCGGACGGGCGGGAGCTGATCGTCAATGATATCCGTCCTGGCGAAGTGATCGGGGAAACCGCGCTGATC
CAGCCGAACCGCCGCGAGACCTCTGCCTACGCCTCCGGCGCGGCGTCGGTGCTGATCCTCCACCGACGTCAC
TTCGCCCCGTTGATCGCCGACACGGAATTCCTCAACCGCGCGCTGGCCCTCCTCTGTTCGCGCCTGCGCGAA
GCCTCCGGTTTCGTCGAGAGGGTCTGCCTGCATCGCCTGGAGTCGCGCCTGGCGCGCCATCTCCTGGCCAGC
CTGGCGAGCGAACAACCCGAGGGAGCCTGCGCGACGCTACCGACCAACCAGAGCATCCTAGCAGCGATGCTC
AACGCCAGCCGGCCGAAGCTCAACGCGCAACTGCAAATATGGAAACGCGAAGGGCTGATCAGCTGCCGCAAC
GACCGGATCCTGATCAACGACCTCGGTCGCCTGCGACGCAAGGCCGAACTACCAGCCGCGCCCCTGTCACCC
AGGTAA
Translation:
MHSNESTEDRCSRHYTLLQRCPLLHGLPDLLRHVATHASERRLRDKDVLFLKHDPEDFIGLVLGGHLYTVLY
GPDGRELIVNDIRPGEVIGETALIQPNRRETSAYASGAASVLILHRRHFAPLIADTEFLNRALALLCSRLRE
ASGFVERVCLHRLESRLARHLLASLASEQPEGACATLPTNQSILAAMLNASRPKLNAQLQIWKREGLISCRN
DRILINDLGRLRRKAELPAAPLSPR*
AnnotationID:6171GeneID:6170
AnnotatorUID: danlee
Modification Date/Time: 2005-10-13 15:03:22
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|24461653|gb|AAN62222.1|  putative transcriptional regulator [Pseudomonas aeruginosa]
gi|24461642|gb|AAN62213.1|  putative transcriptional regulator [Pseudomonas aeruginosa]
     Length=241
     Score =  481 bits (1238),  Expect = 8e-135
     Identities = 241/241 (100%), Positives = 241/241 (100%), Gaps = 0/241 (0%)

gi|34496193|ref|NP_900408.1|  probable transcriptional regulator Crp/Fnr-family [Chromobacterium 
violaceum ATCC 12472]
gi|34330288|gb|AAQ58414.2|  probable transcriptional regulator Crp/Fnr-family [Chromobacterium 
violaceum ATCC 12472]
     Length=232
     Score =  202 bits (515),  Expect = 6e-51
     Identities = 111/224 (49%), Positives = 147/224 (65%), Gaps = 4/224 (1%)






 
Structural Features:
COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent
protein kinases [Signal transduction mechanisms].
             CD-Length = 214 residues,  99.1% aligned
             Score = 78.7 bits (193), Expect = 5e-16

cd00038, CAP_ED, effector domain of the CAP family of transcription factors.
             CD-Length = 115 residues, 100.0% aligned
             Score = 69.3 bits (169), Expect = 4e-13






   
Genomic Context:






   
Comment:
Corresponds to ORFC/SG120 of P. aeruginosa strains SG17M and Clone C strain C.


















    ReferenceID:12196




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29457




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36225




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6170_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6170
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198601
                           gb|AAN62222.1|AF440524_9
                           (AF440524) putative transcriptional regulator [Pseudomonas aeruginosa]
                           241
                           99.99
                           99.99
                           0
                           1238.0
     

     
     
198602
                           gb|AAN62213.1|AF440523_120
                           (AF440523) putative transcriptional regulator [Pseudomonas aeruginosa]
                           241
                           99.99
                           99.99
                           0
                           1238.0
     

     
     
198603
                           gb|AAQ58414.2|
                           (AE016912) probable transcriptional regulator Crp/Fnr-family [Chromobacterium violaceum ATCC 12472]
                           247
                           45.74
                           60.32
                           21
                           510.0
     

     






      

          
GC ORFID: 49172How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2551464Stop: 2552189

          
Length: 726


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCACTCGAACGAGTCAACGGAAGACCGCTGTTCACGCCACTACACCCTGCTGCAACGGTGCCCGCTGCTG 
CACGGGCTGCCCGATCTGCTGCGGCACGTGGCGACCCATGCGTCGGAGCGCCGGTTGCGCGACAAGGACGTC 
CTGTTCCTCAAGCACGACCCTGAAGACTTCATCGGCCTGGTCCTCGGCGGACACCTCTATACCGTGCTCTAC 
GGGCCGGACGGGCGGGAGCTGATCGTCAATGATATCCGTCCTGGCGAAGTGATCGGGGAAACCGCGCTGATC 
CAGCCGAACCGCCGCGAGACCTCTGCCTACGCCTCCGGCGCGGCGTCGGTGCTGATCCTCCACCGACGTCAC 
TTCGCCCCGTTGATCGCCGACACGGAATTCCTCAACCGCGCGCTGGCCCTCCTCTGTTCGCGCCTGCGCGAA 
GCCTCCGGTTTCGTCGAGAGGGTCTGCCTGCATCGCCTGGAGTCGCGCCTGGCGCGCCATCTCCTGGCCAGC 
CTGGCGAGCGAACAACCCGAGGGAGCCTGCGCGACGCTACCGACCAACCAGAGCATCCTAGCAGCGATGCTC 
AACGCCAGCCGGCCGAAGCTCAACGCGCAACTGCAAATATGGAAACGCGAAGGGCTGATCAGCTGCCGCAAC 
GACCGGATCCTGATCAACGACCTCGGTCGCCTGCGACGCAAGGCCGAACTACCAGCCGCGCCCCTGTCACCC 
AGGTAA