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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: emb|CAB40970.1| (AJ237898) OlpA protein [Porphyromonas gingivalis]
Identities = 90/252 (35%), Positives = 135/252 (53%), Gaps = 11/252 (4%)
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Sequence:
TTGGTTCGCGACCCCACTTGCCAGGATAGTCGGCGAAGCGGGTCACACATCGACGCGAAAATCGCGCCTACC
AGATCCGGCAGCTTCATCGAAACCGCCGCCGACATAAGCTGTGGGCGCTGTACATCCCTGGATCCTTTCCCG
GCCTGCTCCACGCGGCCGGGATTTTTTTGCCCGCCGCAGCCGCTTCCCGGACAACGCGTCAATCGGTTACGT
CATTGCGCCATCGCGATTGTGGTACCGCACGCCTTGAAGTATGAAAACACACCGCCATTCCCGCGCGGACAT
ACTGCCCAGGACCCATCCATGCCACGAACCAGAACAACAATAATCGCCGCCACCCTGCTGCTGGCCAGCTCC
CTGCTCCACGCCCAGGAGCAGATGCCCGCCGCAACGCCAGCCTCGAACCTGCTCACCGCCGCAGTCGCCTGG
CGGCAGGCCGCCGCCGAATACCGCGCCCTCTACTACCAGGGCTTCAACGTTGCCCGCGATCGACTGGACCGG
GCGCTGGCCGCGCGCCAGCCCGGGGCGAGGAAACCGGCGATCGTCAGCGACCTCGACGATACACTGCTCGGC
AGCAACAGCTACTGGAGCTTCCTGCTCAGCCAGGACAAGGAGTTCTTCGACGACGCCGTCTGGGACCGTTGG
GTCGCAGCCAACGGCCCGAGCCTGACCCCCGGCGCCCTGGAGTTCCTCGAATACGCCAGGTCCCGAGGCGTG
GAGATTTTCTACGTGTCCAGCCGCGACCAGGGCGAAAAGACCCTGGAGTATGCCCTGGGCAACATGCGCGCC
CTGCGCATGCCGTTCGCCGACGCAGAGCATGTGACCATCCTGCGCGACAGCTCGAATAAAGAGCCGGCGCAG
AAGGCCATCGCCGCGCAGTACGACGTGTTGCTGATGCTCGGCGACAACCTGAACGACTTCCAGCGCCGCTAC
TACGTCGACGACGTGATGCAGCGCAACCGGCTGCTCGACGAGGACCACAAGGCATTCGGCGAGAAGTACGTG
ATCTTCCCCAATCCCACCGACGGCCATTGGATGAAAGCCATCTTCGGTGAATCGGAACCCGCCGACACGCCG
ACCAACCGCGCCCGCTTCCGCGCTGCGGCGAGCCAGGGCGCCTGGATGGGCGGCGACTGA |
Translation:
MVRDPTCQDSRRSGSHIDAKIAPTRSGSFIETAADISCGRCTSLDPFPACSTRPGFFCPPQPLPGQRVNRLR
HCAIAIVVPHALKYENTPPFPRGHTAQDPSMPRTRTTIIAATLLLASSLLHAQEQMPAATPASNLLTAAVAW
RQAAAEYRALYYQGFNVARDRLDRALAARQPGARKPAIVSDLDDTLLGSNSYWSFLLSQDKEFFDDAVWDRW
VAANGPSLTPGALEFLEYARSRGVEIFYVSSRDQGEKTLEYALGNMRALRMPFADAEHVTILRDSSNKEPAQ
KAIAAQYDVLLMLGDNLNDFQRRYYVDDVMQRNRLLDEDHKAFGEKYVIFPNPTDGHWMKAIFGESEPADTP
TNRARFRAAASQGAWMGGD* |
AnnotationID:6162 | GeneID:6161 |
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Modification Date/Time: |
2006-03-27 17:05:32 |
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GeneProduct: | putative secreted acid phosphatase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (23) Secreted Factors (toxins, enzymes, alginate) |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | putative enzymes |
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Homology: | gi|68346794|gb|AAY94400.1| acid phosphatase5'-nucleotidase, lipoprotein e(P4) family [Pseudomonas
fluorescens Pf-5]
gi|70732495|ref|YP_262258.1| acid phosphatase5'-nucleotidase, lipoprotein e(P4) family [Pseudomonas
fluorescens Pf-5]
Length=238
Score = 319 bits (817), Expect = 1e-85
Identities = 150/234 (64%), Positives = 193/234 (82%), Gaps = 0/234 (0%) |
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Structural Features: | COG2503, Predicted secreted acid phosphatase
CD-Length = 274 residues, 87.2% aligned
Score = 176 bits (447), Expect = 4e-45
Identities = 85/244 (34%), Positives = 135/244 (55%), Gaps = 7/244 (2%) |
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GC ORFID: 49163 | How Found: Glimmer |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: | Glimmer Score: |
Start: 2509417 | Stop: 2510556 |
Length: 1140 | |
Start Codon: TTG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: | Homolog Bit Score |
Other Homologs: |
GC ORF Sequence |
TTGGTTCGCGACCCCACTTGCCAGGATAGTCGGCGAAGCGGGTCACACATCGACGCGAAAATCGCGCCTACC AGATCCGGCAGCTTCATCGAAACCGCCGCCGACATAAGCTGTGGGCGCTGTACATCCCTGGATCCTTTCCCG GCCTGCTCCACGCGGCCGGGATTTTTTTGCCCGCCGCAGCCGCTTCCCGGACAACGCGTCAATCGGTTACGT CATTGCGCCATCGCGATTGTGGTACCGCACGCCTTGAAGTATGAAAACACACCGCCATTCCCGCGCGGACAT ACTGCCCAGGACCCATCCATGCCACGAACCAGAACAACAATAATCGCCGCCACCCTGCTGCTGGCCAGCTCC CTGCTCCACGCCCAGGAGCAGATGCCCGCCGCAACGCCAGCCTCGAACCTGCTCACCGCCGCAGTCGCCTGG CGGCAGGCCGCCGCCGAATACCGCGCCCTCTACTACCAGGGCTTCAACGTTGCCCGCGATCGACTGGACCGG GCGCTGGCCGCGCGCCAGCCCGGGGCGAGGAAACCGGCGATCGTCAGCGACCTCGACGATACACTGCTCGGC AGCAACAGCTACTGGAGCTTCCTGCTCAGCCAGGACAAGGAGTTCTTCGACGACGCCGTCTGGGACCGTTGG GTCGCAGCCAACGGCCCGAGCCTGACCCCCGGCGCCCTGGAGTTCCTCGAATACGCCAGGTCCCGAGGCGTG GAGATTTTCTACGTGTCCAGCCGCGACCAGGGCGAAAAGACCCTGGAGTATGCCCTGGGCAACATGCGCGCC CTGCGCATGCCGTTCGCCGACGCAGAGCATGTGACCATCCTGCGCGACAGCTCGAATAAAGAGCCGGCGCAG AAGGCCATCGCCGCGCAGTACGACGTGTTGCTGATGCTCGGCGACAACCTGAACGACTTCCAGCGCCGCTAC TACGTCGACGACGTGATGCAGCGCAACCGGCTGCTCGACGAGGACCACAAGGCATTCGGCGAGAAGTACGTG ATCTTCCCCAATCCCACCGACGGCCATTGGATGAAAGCCATCTTCGGTGAATCGGAACCCGCCGACACGCCG ACCAACCGCGCCCGCTTCCGCGCTGCGGCGAGCCAGGGCGCCTGGATGGGCGGCGACTGA |
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