ViewGene

Locus Name:
GeneID:
Location:

GeneID:6161
TrivialName: PA14_28250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28250
PAO1 Ortholog Locus:
Sequence Length:1140
Protein Length:379
Start: 2444509
Stop: 2443370
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAB40970.1| (AJ237898) OlpA protein [Porphyromonas gingivalis]
Identities = 90/252 (35%), Positives = 135/252 (53%), Gaps = 11/252 (4%)
Sequence:
TTGGTTCGCGACCCCACTTGCCAGGATAGTCGGCGAAGCGGGTCACACATCGACGCGAAAATCGCGCCTACC
AGATCCGGCAGCTTCATCGAAACCGCCGCCGACATAAGCTGTGGGCGCTGTACATCCCTGGATCCTTTCCCG
GCCTGCTCCACGCGGCCGGGATTTTTTTGCCCGCCGCAGCCGCTTCCCGGACAACGCGTCAATCGGTTACGT
CATTGCGCCATCGCGATTGTGGTACCGCACGCCTTGAAGTATGAAAACACACCGCCATTCCCGCGCGGACAT
ACTGCCCAGGACCCATCCATGCCACGAACCAGAACAACAATAATCGCCGCCACCCTGCTGCTGGCCAGCTCC
CTGCTCCACGCCCAGGAGCAGATGCCCGCCGCAACGCCAGCCTCGAACCTGCTCACCGCCGCAGTCGCCTGG
CGGCAGGCCGCCGCCGAATACCGCGCCCTCTACTACCAGGGCTTCAACGTTGCCCGCGATCGACTGGACCGG
GCGCTGGCCGCGCGCCAGCCCGGGGCGAGGAAACCGGCGATCGTCAGCGACCTCGACGATACACTGCTCGGC
AGCAACAGCTACTGGAGCTTCCTGCTCAGCCAGGACAAGGAGTTCTTCGACGACGCCGTCTGGGACCGTTGG
GTCGCAGCCAACGGCCCGAGCCTGACCCCCGGCGCCCTGGAGTTCCTCGAATACGCCAGGTCCCGAGGCGTG
GAGATTTTCTACGTGTCCAGCCGCGACCAGGGCGAAAAGACCCTGGAGTATGCCCTGGGCAACATGCGCGCC
CTGCGCATGCCGTTCGCCGACGCAGAGCATGTGACCATCCTGCGCGACAGCTCGAATAAAGAGCCGGCGCAG
AAGGCCATCGCCGCGCAGTACGACGTGTTGCTGATGCTCGGCGACAACCTGAACGACTTCCAGCGCCGCTAC
TACGTCGACGACGTGATGCAGCGCAACCGGCTGCTCGACGAGGACCACAAGGCATTCGGCGAGAAGTACGTG
ATCTTCCCCAATCCCACCGACGGCCATTGGATGAAAGCCATCTTCGGTGAATCGGAACCCGCCGACACGCCG
ACCAACCGCGCCCGCTTCCGCGCTGCGGCGAGCCAGGGCGCCTGGATGGGCGGCGACTGA
Translation:
MVRDPTCQDSRRSGSHIDAKIAPTRSGSFIETAADISCGRCTSLDPFPACSTRPGFFCPPQPLPGQRVNRLR
HCAIAIVVPHALKYENTPPFPRGHTAQDPSMPRTRTTIIAATLLLASSLLHAQEQMPAATPASNLLTAAVAW
RQAAAEYRALYYQGFNVARDRLDRALAARQPGARKPAIVSDLDDTLLGSNSYWSFLLSQDKEFFDDAVWDRW
VAANGPSLTPGALEFLEYARSRGVEIFYVSSRDQGEKTLEYALGNMRALRMPFADAEHVTILRDSSNKEPAQ
KAIAAQYDVLLMLGDNLNDFQRRYYVDDVMQRNRLLDEDHKAFGEKYVIFPNPTDGHWMKAIFGESEPADTP
TNRARFRAAASQGAWMGGD*
AnnotationID:6162GeneID:6161
AnnotatorUID: danlee
Modification Date/Time: 2006-03-27 17:05:32
Gene Name:
Confidence Code:3
GeneProduct:putative secreted acid phosphatase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2503
Secondary Functional Category(ies):putative enzymes
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|68346794|gb|AAY94400.1|  acid phosphatase5'-nucleotidase, lipoprotein e(P4) family [Pseudomonas 
fluorescens Pf-5]
 gi|70732495|ref|YP_262258.1|  acid phosphatase5'-nucleotidase, lipoprotein e(P4) family [Pseudomonas 
fluorescens Pf-5]
Length=238

 Score =  319 bits (817),  Expect = 1e-85
 Identities = 150/234 (64%), Positives = 193/234 (82%), Gaps = 0/234 (0%)
Structural Features:
COG2503, Predicted secreted acid phosphatase 
CD-Length = 274 residues,  87.2% aligned
Score =  176 bits (447), Expect = 4e-45
Identities = 85/244 (34%), Positives = 135/244 (55%), Gaps = 7/244 (2%)
Genomic Context:
Comment:
ReferenceID:15968
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29439
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36283
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6161_cdd.html
URL:
GC ORFID: 49163How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2509417Stop: 2510556
Length: 1140
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGGTTCGCGACCCCACTTGCCAGGATAGTCGGCGAAGCGGGTCACACATCGACGCGAAAATCGCGCCTACC
AGATCCGGCAGCTTCATCGAAACCGCCGCCGACATAAGCTGTGGGCGCTGTACATCCCTGGATCCTTTCCCG
GCCTGCTCCACGCGGCCGGGATTTTTTTGCCCGCCGCAGCCGCTTCCCGGACAACGCGTCAATCGGTTACGT
CATTGCGCCATCGCGATTGTGGTACCGCACGCCTTGAAGTATGAAAACACACCGCCATTCCCGCGCGGACAT
ACTGCCCAGGACCCATCCATGCCACGAACCAGAACAACAATAATCGCCGCCACCCTGCTGCTGGCCAGCTCC
CTGCTCCACGCCCAGGAGCAGATGCCCGCCGCAACGCCAGCCTCGAACCTGCTCACCGCCGCAGTCGCCTGG
CGGCAGGCCGCCGCCGAATACCGCGCCCTCTACTACCAGGGCTTCAACGTTGCCCGCGATCGACTGGACCGG
GCGCTGGCCGCGCGCCAGCCCGGGGCGAGGAAACCGGCGATCGTCAGCGACCTCGACGATACACTGCTCGGC
AGCAACAGCTACTGGAGCTTCCTGCTCAGCCAGGACAAGGAGTTCTTCGACGACGCCGTCTGGGACCGTTGG
GTCGCAGCCAACGGCCCGAGCCTGACCCCCGGCGCCCTGGAGTTCCTCGAATACGCCAGGTCCCGAGGCGTG
GAGATTTTCTACGTGTCCAGCCGCGACCAGGGCGAAAAGACCCTGGAGTATGCCCTGGGCAACATGCGCGCC
CTGCGCATGCCGTTCGCCGACGCAGAGCATGTGACCATCCTGCGCGACAGCTCGAATAAAGAGCCGGCGCAG
AAGGCCATCGCCGCGCAGTACGACGTGTTGCTGATGCTCGGCGACAACCTGAACGACTTCCAGCGCCGCTAC
TACGTCGACGACGTGATGCAGCGCAACCGGCTGCTCGACGAGGACCACAAGGCATTCGGCGAGAAGTACGTG
ATCTTCCCCAATCCCACCGACGGCCATTGGATGAAAGCCATCTTCGGTGAATCGGAACCCGCCGACACGCCG
ACCAACCGCGCCCGCTTCCGCGCTGCGGCGAGCCAGGGCGCCTGGATGGGCGGCGACTGA