ViewGene
Locus Name:
GeneID:
Location:

GeneID:616
TrivialName: PA14_44560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44560
PAO1 Ortholog Locus:PA1538
Sequence Length:1584
Protein Length:527
Start: 3966078
Stop: 3967661
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04927.1|AE004582_5 (AE004582) probable flavin-containing monooxygenase [Pseudomonas aeruginosa PAO1]
Identities = 526/527 (99%), Positives = 527/527 (100%)
Sequence:
GTGTATACGCCAGCAAACAATCATAACAGGAGCTTGGCCATGAGTACCCAACCCACCCCTGCCGCCGCCCGG
CACTGCAAGGTCGCCATCATCGGCACCGGTTTCTCCGGGCTGGGGATGGCGATCCGTCTCCGCCAGGAAGGC
GAGGACGACTTCCTGATCTTCGAAAAGGACGCCGGCGTCGGCGGCACCTGGAGAGTCAACAACTACCCTGGC
TGCGCCTGCGACGTGCAATCCCACGTCTATTCCTTCTCCTTCGAAGCGAACCCGGAGTGGACGCGGATGTTC
GCCCGCCAGCCGGAAATCCGCGCCTATCTGGAGAAGTGCTGGGAAAAATACCGCTTGCAGGAAAAGACCCTG
CTGAACACCGAGATCGGCAAACTGGCCTGGGACGAGCGGCAAAGCCTCTGGCACCTGCATGACGCCCAGGGC
AACCATTACACCGCGAACGCCGTGGTTTCCGGTATGGGCGGCCTGTCCACCCCGGCCTATCCGCGCCTCGAT
GGCCTGGAGAACTTCCAGGGCAAGGTCTTCCATTCCCAGCAGTGGGACCATGACTACGACCTCAAGGGCAAG
CGCGTGGCGGTGATCGGCACCGGCGCCTCGGCGATCCAGTTCGTCCCGGAGATCCAGCCGCTGGTGGCCGCG
CTCGATCTCTACCAGCGCACTCCGCCATGGATCCTGCCCAAACCCGACCGGGCGATCAGCGAAACCGAGCGC
CGGCGCTTCCGGCGCTTCCCGCTGGTGCAAAAGCTCTGGCGCGGCGGCCTCTACAGCCTGCTCGAAGGGCGG
GTGCTGGGCTTCACCTTCGCCCCGCAGGTGATGAAGCTGGTGCAGCGCCTGGCGATCCGCCACATCCACAAG
CAGATCAAGGATCCGGAACTGCGCCGCAAGGTCACGCCGGACTACACCATCGGCTGCAAGCGCATCCTCATG
TCGCACAACTACTATCCGGCCCTGGCTGCCGCCAATTCCACGGTGATCACCGAAGGCATCCGCGCCGTCACC
GCCAACGGAATCGTCGACGGCAACGGCCGGGAACGCGAGGTCGACGCGATCATCTTCGGTACCGGCTTCACC
GCCAACGACCCTATCCCCCGCGGAGTGGTATTCGGTCGCGACGGCCGCGACCTGCTGGACAGCTGGACCAAG
GGCCCGGAAGCCTACAAGGGCACTACCACCGCCGGCTTCCCCAACCTGTTCTTCCTGATGGGACCGAACACC
GGCCTCGGCCACAACTCGATGGTCTACATGATCGAGTCGCAGATCGCCTACGTCCTCGATGCGCTGAAGCTG
ATGAAGCGCCGCGAACTGCTCAGTCTCGAGGTCAAGGCCCCGGTGCAGGAACGCTACAACGAATACCTCCAG
CGCAAGCTGGACCGCAGCGTCTGGAGCGTGGGCGGTTGCAAGAGCTGGTACCTGCATCCGGTCAGCGGCCGC
AACTGCACCCTGTGGCCGGGATTCACCTGGCGCTTCCGTGCCCTGACCCGGCAGTTCGACGCCTCCGCCTAC
CACCTCACCACGACACCGCTCGCCGCCCTGAGCAACGAAGCCCGCCAACAGGCCGAAGGGGTACCCGCATGA
Translation:
MYTPANNHNRSLAMSTQPTPAAARHCKVAIIGTGFSGLGMAIRLRQEGEDDFLIFEKDAGVGGTWRVNNYPG
CACDVQSHVYSFSFEANPEWTRMFARQPEIRAYLEKCWEKYRLQEKTLLNTEIGKLAWDERQSLWHLHDAQG
NHYTANAVVSGMGGLSTPAYPRLDGLENFQGKVFHSQQWDHDYDLKGKRVAVIGTGASAIQFVPEIQPLVAA
LDLYQRTPPWILPKPDRAISETERRRFRRFPLVQKLWRGGLYSLLEGRVLGFTFAPQVMKLVQRLAIRHIHK
QIKDPELRRKVTPDYTIGCKRILMSHNYYPALAAANSTVITEGIRAVTANGIVDGNGREREVDAIIFGTGFT
ANDPIPRGVVFGRDGRDLLDSWTKGPEAYKGTTTAGFPNLFFLMGPNTGLGHNSMVYMIESQIAYVLDALKL
MKRRELLSLEVKAPVQERYNEYLQRKLDRSVWSVGGCKSWYLHPVSGRNCTLWPGFTWRFRALTRQFDASAY
HLTTTPLAALSNEARQQAEGVPA*
AnnotationID:625GeneID:616
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 08:08:42
Gene Name:
Confidence Code:3
GeneProduct:putative flavin-containing monooxygenase
Cell Localization:()
Synonyms:PA1538
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2072,pfam00743
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC36351.2| (AF090329) putative flavin-binding monooxygenase [Pseudomonas
           fluorescens]
          Length = 512

 Score =  589 bits (1519), Expect = e-167
 Identities = 273/486 (56%), Positives = 354/486 (72%)

>dbj|BAC71337.1| (AP005035) putative monooxygenase [Streptomyces avermitilis
           MA-4680]
          Length = 520

 Score =  481 bits (1237), Expect = e-135
 Identities = 246/501 (49%), Positives = 328/501 (65%), Gaps = 6/501 (1%)

>gb|AAK47465.1| (AE007131) monooxygenase, flavin-binding family [Mycobacterium
           tuberculosis CDC1551]
          Length = 524

 Score =  461 bits (1185), Expect = e-129
 Identities = 237/499 (47%), Positives = 314/499 (62%), Gaps = 9/499 (1%)








 
Structural Features:
COG2072, TrkA, Predicted flavoprotein involved in K+ transport 
[Inorganic ion transport and metabolism]
CD-Length = 443 residues, 100.0% aligned
Score =  364 bits (935), Expect = 1e-101
Identities = 165/455 (36%), Positives = 213/455 (46%), Gaps = 17/455 (3%)

pfam00743, FMO-like, Flavin-binding monooxygenase-like. 
CD-Length = 532 residues,  90.2% aligned
Score =  172 bits (437), Expect = 9e-44
Identities = 102/484 (21%), Positives = 169/484 (34%), Gaps = 40/484 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14179




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18377




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37321




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:616_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:616
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1046
                           PA1538_tr
                           translation of PA1538
                           527
                           99.81
                           99.99
                           0
                           2811.0
     

     
     
40710
                           gb|AAG04927.1|AE004582_5
                           (AE004582) probable flavin-containing monooxygenase [Pseudomonas aeruginosa PAO1]
                           527
                           99.62
                           99.99
                           0
                           2808.0
     

     
     
40711
                           gb|AAC36351.2|
                           (AF090329) putative flavin-binding monooxygenase [Pseudomonas fluorescens]
                           530
                           52.83
                           68.67
                           21
                           1515.0
     

     
     
1047
                           PA2097_tr
                           translation of PA2097
                           527
                           46.86
                           61.29
                           36
                           1251.0
     

     
     
40712
                           gb|AAG05485.1|AE004637_5
                           (AE004637) probable flavin-binding monooxygenase [Pseudomonas aeruginosa PAO1]
                           527
                           46.86
                           61.29
                           36
                           1251.0
     

     






      

          
GC ORFID: 43618How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1538Glimmer Score: 

          
Start: 987831Stop: 986248

          
Length: 1584


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1538 translation of PA1538Homolog Bit Score 1087.0

          
Other Homologs:  t_PA2097 (ORF: BLASTX 484.0), t_PA1538 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTATACGCCAGCAAACAATCATAACAGGAGCTTGGCCATGAGTACCCAACCCACCCCTGCCGCCGCCCGG 
CACTGCAAGGTCGCCATCATCGGCACCGGTTTCTCCGGGCTGGGGATGGCGATCCGTCTCCGCCAGGAAGGC 
GAGGACGACTTCCTGATCTTCGAAAAGGACGCCGGCGTCGGCGGCACCTGGAGAGTCAACAACTACCCTGGC 
TGCGCCTGCGACGTGCAATCCCACGTCTATTCCTTCTCCTTCGAAGCGAACCCGGAGTGGACGCGGATGTTC 
GCCCGCCAGCCGGAAATCCGCGCCTATCTGGAGAAGTGCTGGGAAAAATACCGCTTGCAGGAAAAGACCCTG 
CTGAACACCGAGATCGGCAAACTGGCCTGGGACGAGCGGCAAAGCCTCTGGCACCTGCATGACGCCCAGGGC 
AACCATTACACCGCGAACGCCGTGGTTTCCGGTATGGGCGGCCTGTCCACCCCGGCCTATCCGCGCCTCGAT 
GGCCTGGAGAACTTCCAGGGCAAGGTCTTCCATTCCCAGCAGTGGGACCATGACTACGACCTCAAGGGCAAG 
CGCGTGGCGGTGATCGGCACCGGCGCCTCGGCGATCCAGTTCGTCCCGGAGATCCAGCCGCTGGTGGCCGCG 
CTCGATCTCTACCAGCGCACTCCGCCATGGATCCTGCCCAAACCCGACCGGGCGATCAGCGAAACCGAGCGC 
CGGCGCTTCCGGCGCTTCCCGCTGGTGCAAAAGCTCTGGCGCGGCGGCCTCTACAGCCTGCTCGAAGGGCGG 
GTGCTGGGCTTCACCTTCGCCCCGCAGGTGATGAAGCTGGTGCAGCGCCTGGCGATCCGCCACATCCACAAG 
CAGATCAAGGATCCGGAACTGCGCCGCAAGGTCACGCCGGACTACACCATCGGCTGCAAGCGCATCCTCATG 
TCGCACAACTACTATCCGGCCCTGGCTGCCGCCAATTCCACGGTGATCACCGAAGGCATCCGCGCCGTCACC 
GCCAACGGAATCGTCGACGGCAACGGCCGGGAACGCGAGGTCGACGCGATCATCTTCGGTACCGGCTTCACC 
GCCAACGACCCTATCCCCCGCGGAGTGGTATTCGGTCGCGACGGCCGCGACCTGCTGGACAGCTGGACCAAG 
GGCCCGGAAGCCTACAAGGGCACTACCACCGCCGGCTTCCCCAACCTGTTCTTCCTGATGGGACCGAACACC 
GGCCTCGGCCACAACTCGATGGTCTACATGATCGAGTCGCAGATCGCCTACGTCCTCGATGCGCTGAAGCTG 
ATGAAGCGCCGCGAACTGCTCAGTCTCGAGGTCAAGGCCCCGGTGCAGGAACGCTACAACGAATACCTCCAG 
CGCAAGCTGGACCGCAGCGTCTGGAGCGTGGGCGGTTGCAAGAGCTGGTACCTGCATCCGGTCAGCGGCCGC 
AACTGCACCCTGTGGCCGGGATTCACCTGGCGCTTCCGTGCCCTGACCCGGCAGTTCGACGCCTCCGCCTAC 
CACCTCACCACGACACCGCTCGCCGCCCTGAGCAACGAAGCCCGCCAACAGGCCGAAGGGGTACCCGCATGA