ViewGene
Locus Name:
GeneID:
Location:

GeneID:6152
TrivialName: PA14_28540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28540
PAO1 Ortholog Locus:
Sequence Length:234
Protein Length:77
Start: 2461317
Stop: 2461550
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO55567.1| (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 24/67 (35%), Positives = 43/67 (64%)
Sequence:
ATGTCTGTCGACCTGAAGAAAATCGCCGCTGCCTTTCCCGAGTTCCAGTTGTCCAGCAAGAGCCGCCACGAC
GGCGCGCTGTTGTTGCAGTTGCAGGCCGCCGACGGCCGCTACGTAGCTCGCACCATACCCTCGCCGCAGCTC
AGCGCGCCGCCGGAGACCGAATGGCTGATCCGCAGCATCCGCCGGGAACTGGCCGTGCCGGGCATGGAAATG
GCGATGGCGGCACGCTGA
Translation:
MSVDLKKIAAAFPEFQLSSKSRHDGALLLQLQAADGRYVARTIPSPQLSAPPETEWLIRSIRRELAVPGMEM
AMAAR*
AnnotationID:6153GeneID:6152
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 08:08:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:12167




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29423




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49154How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2492609Stop: 2492376

          
Length: 234


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTCTGTCGACCTGAAGAAAATCGCCGCTGCCTTTCCCGAGTTCCAGTTGTCCAGCAAGAGCCGCCACGAC 
GGCGCGCTGTTGTTGCAGTTGCAGGCCGCCGACGGCCGCTACGTAGCTCGCACCATACCCTCGCCGCAGCTC 
AGCGCGCCGCCGGAGACCGAATGGCTGATCCGCAGCATCCGCCGGGAACTGGCCGTGCCGGGCATGGAAATG 
GCGATGGCGGCACGCTGA