ViewGene

Locus Name:
GeneID:
Location:

GeneID:6146
TrivialName: PA14_28750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28750
PAO1 Ortholog Locus:
Sequence Length:375
Protein Length:124
Start: 2475199
Stop: 2474825
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04376.1|AE004531_13 (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 113/124 (91%), Positives = 118/124 (95%)
Sequence:
ATGGCACACTTTCGGGGCTACTCGCAGGCGATCCGCACCGACCAAGGTCCCGAGTTCACCGGCAAGGCGCTC
AATCAATGGGCCTATCAGCGCGACATCAAACTGAAGCTGATTCAGCCTGGCAAGCCCACGCAGAATGCCTTC
ATCAAGTCGGTCAACGGCAAGTTCCGGGATGAATGCCTCAACGAGTACTGGTTCTGTTCGCTGGCCGAATCC
AGAATCCGCGTTGCGGCCTGGCGACGGGATTACAACGAGCACCGACCGCACAGCGCCATTGGCAATCTCACC
CCGGCGGAATTTGCTGCAAGTTGGCGAGCTCGCCAGCAGCAATTGAAGCAGGAAAAATTGATATCAACCCCA
GGGCCTACTAACTAG
Translation:
MAHFRGYSQAIRTDQGPEFTGKALNQWAYQRDIKLKLIQPGKPTQNAFIKSVNGKFRDECLNEYWFCSLAES
RIRVAAWRRDYNEHRPHSAIGNLTPAEFAASWRARQQQLKQEKLISTPGPTN*
AnnotationID:6147GeneID:6146
AnnotatorUID: danlee
Modification Date/Time: 2005-10-12 15:03:14
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|11347727|pir||H83523  conserved hypothetical protein PA0987 [Pseudomonas aeruginosa PAO1]
     Length=280
     Score =  242 bits (618),  Expect = 2e-63
     Identities = 113/124 (91%), Positives = 118/124 (95%), Gaps = 0/124 (0%)
Structural Features:
pfam00665, rve, Integrase core domain.
             CD-Length = 160 residues, only  60.0% aligned
             Score = 70.5 bits (172), Expect = 5e-14

COG2801, Tra5, Transposase and inactivated derivatives.
             CD-Length = 232 residues, only  39.2% aligned
             Score = 43.8 bits (101), Expect = 5e-06
Genomic Context:
Comment:
This ORF corresponds to the 3' end of PA0987 and pfam00665/COG2801, putative transposase/integrase sequences.
ReferenceID:12157
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29411
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36297
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6146_cdd.html
URL:
Homologs By Global Alignment
Gene ID:6146

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198539 gb|AAP82958.1| (AY273870) putative transposase [Pseudomonas aeruginosa] 196 50.00 54.59 79 511.0
7955 PA0987_tr translation of PA0987 280 40.35 42.14 156 618.0
198537 gb|AAG04376.1|AE004531_13 (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 280 40.35 42.14 156 618.0
198547 emb|CAB46578.1| (AJ132945) IS1222-like transposase [Yersinia enterocolitica] 171 38.59 52.63 53 383.0
198541 gb|AAK27406.1| (AY028370) hypothetical protein 1 [Burkholderia mallei] 195 37.94 45.64 83 396.0
GC ORFID: 49148How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2478727Stop: 2479101
Length: 375
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0987 translation of PA0987Homolog Bit Score 242.0
Other Homologs: t_PA0987 translation of PA0987 (BLASTP 242), t_RS13 189 Homolog: PA0987 / Putative transposase; recombination-related / P. aeruginosa / PAO1 (AAG04376) translation of RS13 (BLASTP 199)
GC ORF Sequence
ATGGCACACTTTCGGGGCTACTCGCAGGCGATCCGCACCGACCAAGGTCCCGAGTTCACCGGCAAGGCGCTC
AATCAATGGGCCTATCAGCGCGACATCAAACTGAAGCTGATTCAGCCTGGCAAGCCCACGCAGAATGCCTTC
ATCAAGTCGGTCAACGGCAAGTTCCGGGATGAATGCCTCAACGAGTACTGGTTCTGTTCGCTGGCCGAATCC
AGAATCCGCGTTGCGGCCTGGCGACGGGATTACAACGAGCACCGACCGCACAGCGCCATTGGCAATCTCACC
CCGGCGGAATTTGCTGCAAGTTGGCGAGCTCGCCAGCAGCAATTGAAGCAGGAAAAATTGATATCAACCCCA
GGGCCTACTAACTAG