ViewGene
Locus Name:
GeneID:
Location:

GeneID:6144
TrivialName: PA14_28800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28800
PAO1 Ortholog Locus:
Sequence Length:996
Protein Length:331
Start: 2479279
Stop: 2480274
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAL95167.1| (AE010604) hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Identities = 116/264 (43%), Positives = 179/264 (67%)
Sequence:
ATGAGAAAATACCAGCCACCGTTGACGTTAACGCCACGCATGTTGGCGCTGGCTGCCGAGATTGGGGAGCGT
GTTGGGCATTTGTCCGCTCTGCATGAAGGGGCGCTGACGCCGCAACTGCGTCGGGGTAACCGCATCCGTACT
ATCCAGGCGTCACTCGCTATTGAGAACAACACGTTAAGCGTCGAGCAGGTCACTGCTGTGTTGGATGGCAAG
CGTGTGCTTGGTTTGCCGCGTGAAATTCAGGAAGTGCGCAATGCCTTTTCAGCCTACGAGGTGATGCCCGAG
TGGCAACCGAGTTTGCGTGATGATTTACTGGCAGCCCACGCGCTGCTGATGCACGGGCTGATCGATGATGCC
GGTAGCTATCGGCGCGGGGGTGTAGGCATCTATCGAGGAGAACGTTTGCTGCACATGGCACCACCGGCCAAC
CGGGTTCCGCAGTTGATGGACGATTTGCTGGCATGGCTGAGCCGCTGCGAGCTGCATCCACTGATCGCCAGT
TGCGTGTTCCATTACGAGTTCGAGTTCATCCACCCCTTCGCAGATGGCAATGGGCGAATGGGGCGCCTATGG
CAAACCTTGATACTCAGCCAATGGCGAGCGGTTCTTGCGTATTTGCCCGTCGAGAGTGTGATTCGCGAGCAG
CAGGATGCTTATTACGAGGCATTGGCTGTTTCTGACAAGGCAGCAGAGGCGGCGCCTTTTGTCGAATTCATG
CTGGCTGCCCTGCGTCAGGCATTGCTTGAAGGTGTTTCAGGCGATCAAGTAAGCGATCAAGTAAGCGATCAA
GTAGCACGCCTGCTGCAAGCGTTACCGCCAGGTGAGGCCCTCAAAGCCAGCGAATTGATGCAGCGCTTAGGG
CTGGCGCACCGTCCGACCTTTAGCAACAACTACCTCAAGCCTGCCCTGGTTGCCGGCTTGATCGAGATGACC
GACCCCGCGTCGCCGCGCAGTCCGGCACAGAAGTACCGGCGAACTGGGTTTTCCAAGTAA
Translation:
MRKYQPPLTLTPRMLALAAEIGERVGHLSALHEGALTPQLRRGNRIRTIQASLAIENNTLSVEQVTAVLDGK
RVLGLPREIQEVRNAFSAYEVMPEWQPSLRDDLLAAHALLMHGLIDDAGSYRRGGVGIYRGERLLHMAPPAN
RVPQLMDDLLAWLSRCELHPLIASCVFHYEFEFIHPFADGNGRMGRLWQTLILSQWRAVLAYLPVESVIREQ
QDAYYEALAVSDKAAEAAPFVEFMLAALRQALLEGVSGDQVSDQVSDQVARLLQALPPGEALKASELMQRLG
LAHRPTFSNNYLKPALVAGLIEMTDPASPRSPAQKYRRTGFSK*
AnnotationID:6145GeneID:6144
AnnotatorUID: danlee
Modification Date/Time: 2005-10-12 15:03:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|53691802|ref|ZP_00129414.2|  COG3177: Uncharacterized conserved protein [Desulfovibrio desulfuricans  G20]
     Length=342
     Score =  445 bits (1145),  Expect = 9e-124
     Identities = 220/325 (67%), Positives = 260/325 (80%), Gaps = 1/325 (0%)

gi|36787221|emb|CAE16302.1|  unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
     Length=386
     Score =  334 bits (857),  Expect = 2e-90
     Identities = 169/330 (51%), Positives = 220/330 (66%), Gaps = 8/330 (2%)

gi|71742281|gb|EAO37433.1|  Restriction modification system DNA specificity domain:Filamentation 
induced by cAMP protein Fic [Pelobacter propionicus DSM 2379]
     Length=791
     Score =  334 bits (857),  Expect = 2e-90
     Identities = 171/295 (57%), Positives = 218/295 (73%), Gaps = 7/295 (2%)






 
Structural Features:
COG3177, Uncharacterized conserved protein [Function unknown].
             CD-Length = 348 residues, only  75.6% aligned
             Score =  126 bits (317), Expect = 4e-30

pfam02661, Fic, Fic protein family. This family consists of the Fic (filamentation induced by cAMP) 
protein and its relatives.
             CD-Length = 120 residues,  88.3% aligned
             Score = 76.2 bits (187), Expect = 6e-15






   
Genomic Context:






   
Comment:


















    ReferenceID:12154




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29407




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36298




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6144_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6144
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198534
                           emb|CAE16302.1|
                           (BX571872) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           390
                           43.58
                           56.92
                           63
                           859.0
     

     
     
198535
                           gb|AAL95167.1|
                           (AE010604) hypothetical cytosolic protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
                           342
                           37.13
                           59.06
                           23
                           613.0
     

     
     
198536
                           gb|AAL03067.1|
                           (AE008615) similarity to cell filamentation proteins (fic) [Rickettsia conorii]
                           384
                           29.42
                           44.79
                           115
                           515.0
     

     






      

          
GC ORFID: 49146How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2474647Stop: 2473652

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAGAAAATACCAGCCACCGTTGACGTTAACGCCACGCATGTTGGCGCTGGCTGCCGAGATTGGGGAGCGT 
GTTGGGCATTTGTCCGCTCTGCATGAAGGGGCGCTGACGCCGCAACTGCGTCGGGGTAACCGCATCCGTACT 
ATCCAGGCGTCACTCGCTATTGAGAACAACACGTTAAGCGTCGAGCAGGTCACTGCTGTGTTGGATGGCAAG 
CGTGTGCTTGGTTTGCCGCGTGAAATTCAGGAAGTGCGCAATGCCTTTTCAGCCTACGAGGTGATGCCCGAG 
TGGCAACCGAGTTTGCGTGATGATTTACTGGCAGCCCACGCGCTGCTGATGCACGGGCTGATCGATGATGCC 
GGTAGCTATCGGCGCGGGGGTGTAGGCATCTATCGAGGAGAACGTTTGCTGCACATGGCACCACCGGCCAAC 
CGGGTTCCGCAGTTGATGGACGATTTGCTGGCATGGCTGAGCCGCTGCGAGCTGCATCCACTGATCGCCAGT 
TGCGTGTTCCATTACGAGTTCGAGTTCATCCACCCCTTCGCAGATGGCAATGGGCGAATGGGGCGCCTATGG 
CAAACCTTGATACTCAGCCAATGGCGAGCGGTTCTTGCGTATTTGCCCGTCGAGAGTGTGATTCGCGAGCAG 
CAGGATGCTTATTACGAGGCATTGGCTGTTTCTGACAAGGCAGCAGAGGCGGCGCCTTTTGTCGAATTCATG 
CTGGCTGCCCTGCGTCAGGCATTGCTTGAAGGTGTTTCAGGCGATCAAGTAAGCGATCAAGTAAGCGATCAA 
GTAGCACGCCTGCTGCAAGCGTTACCGCCAGGTGAGGCCCTCAAAGCCAGCGAATTGATGCAGCGCTTAGGG 
CTGGCGCACCGTCCGACCTTTAGCAACAACTACCTCAAGCCTGCCCTGGTTGCCGGCTTGATCGAGATGACC 
GACCCCGCGTCGCCGCGCAGTCCGGCACAGAAGTACCGGCGAACTGGGTTTTCCAAGTAA