Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: emb|CAD84004.1| (BX321856) recQ; ATP-dependent DNA helicase [Nitrosomonas europaea ATCC 19718]
Identities = 1357/1457 (93%), Positives = 1398/1457 (95%)
Sequence:
ATGTCGCCACTTCCTCAACCCAAGGGCCTGATATTCGATCTTGAGGTAGTGCCGCCCAAGAACAATCAACCT
GCCCGAATCATGATGGTCGGTGCCCTTCGGCCTGACTTAGGGGCAGAGTTGGAGCTGAAGGTCTCTGGAGAC
CCGTCCCCAGCTTTGCAGCAGCTGGATGCACTGTCCGACGGGGCGAGTTTCGTGCTCGGCCACAATGTCATC
GACCACGATCTGCCTATCTTGCGCGAACATTTTCCCGGCATGGCTTTGCATGCTCTGCCGGTCATCGACACC
CTGCGTCTGTCGCCACTGGCGTTTCCACAAAACCCGTATCACCGGCTGATCAAGGATTACAAGCTTATCCGT
GACAGCCTCAACTCGCCGTTGTCCGACTGCCGCTCGACGTTGGTTCTTTTTCTGGATCAACGCCAGGCCTTC
ACGCAGTTGAACGAGACCAACCAGACGGAGCTTCTCTGCTATCAGGCGTTGCTGGCGCCGAGTATGCGGGGA
GATCTGGGGGCTTTCTTCGCATCCCTGACTGGGCAGTCTCCGGTGTCTGTACCCGAGCTCCGAGCGCGGTTT
CCACAATTGCTGCAAGAGACGGATCCAGCCCTTCAGCGTGACTTGAAGGTATGCCGAGCACGGCTTGAGCAA
CTACTTGAGGAGGATTTACAGCGGGAGGATCTGCATTGGCCGTTGGCCTACGCACTGGCCTGGCTCCGTGTA
TCTGGCGGCAACTCGGTACTGGCGCCCTGGGTGCGACATCAGTTTCCAGAGGTTGGGCGGCTAATCTCCGAG
CTGCGTGATATGCCGTGTGAGCGCGAGGATTGTCAGTACTGTCAGACGACTCATGACCCACGCCACGAGCTG
AAGCGCTATTTCGGCTTCCCCGATTTTCGTTACGAGGGTCCTGGAGAGAGTCTCCAGCACGATATAGTGCTG
GCCGGCATGCGTGGTCAACACGTCCTGGCCATCCTGGCGACCGGCGGGGGCAAGTCGCTGTGCTATCAGTTG
CCGGCGCTGAACCGGTTTCATCGTAACGGCAGCCTTACCGTCATCGTCTCGCCGCTGCAGTCGCTGATGAAG
GATCAGGTCGACGGGCTGCTGGAACGTAACGTCCAGTGCGCCGCAGCGCTGAATGGCCTGTTGACGATGCCG
GAGCGCGCCGAGGTACTGGAGAAAATCCAGATGGGCGATGTCGGCATTTTGCTGGTATCGCCCGAGCAGTTC
CGCAACAAGGCTTTCCGGCGAGCGATCCGCCAGCGTCAGGTCGGTGCCTGGATTTTCGATGAGGCGCATTGC
CTGTCGAAATGGGGTAGCGACTTTCGGCCAGACTACCTGTATGTCTCCCGCTTCATCCGGGTGTACACCGGT
GATCAACCGCTGGCGCAGATTGGTTGTTTTACCGCGACGGCCAAGCCTGATGTGCTCGCAGATATCCAGAGC
CATTTCAGGGAAAGCCTGGGCATTGAGTTCAAGGTGTTCCCCGGAGGGCACGAGCGAACCAATCTGCATTTT
GATGTGCTGCCCTGCACCAAGGCAGAGAAGTGGTCGCGTACGGATGGATTATTGCGAGAGCACCTGGACGCT
CAGGAGGGCGGTGCAGTCGTCTTCGTTTCCAGTCGCAAGAGTGCTGAGGAGCTGTCCGATTTCCTGATTGGC
CAAGGATGGCCTTGCAAGCACTTTCATGCCGGTCTTGAGCCCAACACCAAAACGGATATTCAGGACGACTTC
AAGGCTGGGCAACTGAGAATCATCGTAGCTACCAACGCCTTCGGAATGGGCGTGGACAAGGCTGATATCCGT
CTCGTCGTGCATGCCGACATACCAGGTTCGCTGGAGAACTACCTGCAGGAGGCGGGCAGGGCTGGGCGTGAT
CAGGGCGATGCGCGCTGTGTGCTGTTGTACGACCCGCAGGACATCGAAACCCAGTTCGGCATGAGCGAGCGC
TCGAAGCTCAGCATCCGCGACATCCAGCAGATCCTGCGCAAGTTGCGTAACGAGAGCAATCGGCGTAAGGGC
GGCAAGCTGGTCATCACGGCGGGTGAAATCCTGCTGGACGATGATGTTGAAACCAGCTTCTCCGCGGATGAG
CGTGATGCCGAAACCAAGGTCGTTACGGCGGTTGCCTGGCTGGAGCGTGGTGATTACCTCAAACGTGAGGAA
AACCATACGCAGATTTTCCCGGCACGGCTGGATGTGAGCGAGGAAGAGGCCGAGAAGCGCTTGCTGAAGGCC
GAGTTGCCGCAACGTCGATTGGAGGAGTTCAAGGCTATTCTGCGCTTTCTCTACGGCGCCGATGTTGATGAA
CGGGTGAATACCGACCAGTTGATGCAGTTGACCAGTCTGGAGTCGGAAGAGGTTGCCAGCGCACTCAAGCAA
TTGGAGGAGATGGGGCTGCTGGTCAACGACTCGCAGATAACGCTGTATGTGCGCCATGGTGTGACGGGGGCT
TCCAGTCAACGCCTTTCCAGCTCCCTGGAGCTGGAAAGGGCTTTGTTGCAATGCCTGCCAGAGCAGGCACCG
GACGCCGAGCATGGCGATTGGCAGGATTTGAATCTGCCGGCATTGACCGCTGAACTTAAGTCCGCGACAGGG
TTGGATGAACTGCTCCCGCTGCATGTGCTGCGGCTGTTGCGCAGCCTGGCCCAAGATCATGATGCCGATGAT
CAGCAGCGCAGTAGCCTTGAGCTCAGGCAACTCAATCGTGACTACCTCAAACTGCGTATCAAGGGTGGTCAC
TCCTGGGCGAAGATTGTTGGCTTTGGTGACGTGCGGCGTGCATTGGCTAGCAAGTTCCTGGAACTGTTGGTC
GGTAAGCTACCGGCAGGATTGCGTGGCGCGGATCTGCTGGTCGAAACGAGTTTTGGCGAATTGCTCCAGGTG
ATCGAAGGTGACCTCGAACTGCCGCATCTGATTCCGCCGAACAGGCGCCGTAAGGTGATTGAGCATGTCCTG
CTTTATTTGCATCGGCAGGACATTTTGACCCTCAACCACGGCATGACGGTCATGCGTCGGGCCATGACCATC
GAGGTCAAGAAGGAAGACAAGCGTAAGACCTTCCTCAAGGAGGACTACTTGCGACTCGACGAGCACTACCGC
GAGAAGCGCATTCAGGTTCATGTGATGCGTGAATATGCGGAAGTGGCGCTGAAGGAGATGGCTGAGGCGTTG
CGCCTGGTGCTGGACTACTTCACCGACTCCAAGCAGGCGTTTATCAAGCGGCATTTTAATGGGCGGGAGGAC
GTGCTCAAGCTGGCGACCAGCGAGGAGTCATGGAAATCGATTATCGAGTCGCTGAGCACTACTCAGAAACTG
ATAGTCGCCGACGATGACGACATAAATCGGCTGGTGCTGGCTGGGCCGGGCTCCGGCAAGACACGTGTGATC
GTGCATCGCATCGCTTACCTGCTGCGGGTGCGGCGAGTACCAGCGACCAGCATCGTGGCGTTGACCTTCAAC
CGCCACGCGGCGAACGAGATCCGCAAGCGGCTGTTGGCCTTGGTCGGGGCCGATGCCTACGGTGTCAGCGTC
CTGACCTATCACAGCATGGCCATGCGCTTGACCGGCACCCGTTTCGAGCGAGGCGCGACGGTCGACGAGCGA
GCCCTCAAACAAGTATTGAGCGATGCCGTCGAGTTGCTGGAGGGTAAGCGCAATATTGAGGGCGAGGACGAC
CTGCGCGAGCAGCTACTGCGCGGCTACCGTTACATCTTGGTTGATGAATACCAGGACATCGACGACCTGCAA
TACCGTCTGGTCAGTGCTCTGGCTGGGCGGCACGCGGAGGAAGATGGTCGGTTGTGCATCATGGCGGTAGGC
GACGATGACCAGAACATCTATGCCTGGCGCGATACCAATAATCGTTATATCGAGCGCTTCCGCGAGGACTAT
GAGGCCTCGACCAGCTTCCTGGTCGATAACTATCGTTCTTCCCTGCGCATCATTGAGGCGGCCAACCAACTC
ATTGGCCAGAATTTGGCTCGACTGAAAGAGGCCAATCCCATCCGGATCGACAGGGCTCGGCAGGAGCTGCCC
GCTGGCGGGCTATGGGAAGAGCGGGACGAGCAGCGGAAAGGTCAGGTAATGCGACTGCTGATCGACCCGAGC
GACCGTGAGCAGGGCAACCTGCAGGCACAGGCGGCCATGGTGGAGTTGGGACGGTTACTCGCGCTAGAACAG
GGGAGCTGGAACGGCTGTGCGGTTCTGGCTCGGACGCACCGCTATCTGTGGCCGATCCAGGCTTGGTGCGAG
CAGCACGATATTCCTTATTTCCTGGCAGCAGACAAGGAAACGGCGTTACCCATTACTCGGCAGCGCAGTTTT
GTGGCTGCAATCGACTATATGCGAGAAATCAAAGGTGCTTTGTGCGCGGCTGACGCATGGCAGCGTTTGTCG
GGTAGCAATCAACTGGTGGAAGCCGAGTGGAAGAGTTTTTTCCAGACGGCCTTTGAGCAAATGCGAGGAGAA
TTGGGCGACTGCCAACTTGGCAGTGGTGCCTTGATCGACTGGCTGTACGACTACGCCCGTGAATTGCGTCAA
CAGTCCAAGGACGGCCTCTATCTTGGTACCGTGCATTCGGCCAAAGGTCTGGAGTTCCGCCATGTCGTTCTG
CTGGATGGTGGCTGGAGCACGCAGGTCGATACCCTGGCTGATGAGCGACGTTTGTACTACGTGGGGGTGACG
CGAGCCGAACAGACCCTGACGTTGTGCGAATTCGCTGACGGCAATCCATTCAGTCGCAGCCTGATGAGAGAT
GTTCAGCAGCATGAGTTTCAGGGACAACCTCTTCCTGGGTTGGAGGTGCGCTTTCAGCAACTCACGCTGAAG
GAGATCGATATTGGTTTTGCCGGTCGTCAATCACCACATGCCCAGATACACAAGGCCATTGAGGCGCTTCGC
GAGGGCGATCCGCTGACGTTGAAGGAAGAGGCTGGTCGGTATCAACTGCTCGACAGGCAAGGCAACGTGGTT
GGGCGAACCGCTAAGTCATTCCAGCCACAGATCGGCTTCGATCAATGCGAAGTCGCAGCCGTCATGGTGCGG
TTTACTGAGGATAGTGAGGAGCAGTATAGGGATTTGAATAAGTGTGAGCGCTGGGAGGTGGTTGTGCCGAGG
GGGAGAGGGTAG
Translation:
MSPLPQPKGLIFDLEVVPPKNNQPARIMMVGALRPDLGAELELKVSGDPSPALQQLDALSDGASFVLGHNVI
DHDLPILREHFPGMALHALPVIDTLRLSPLAFPQNPYHRLIKDYKLIRDSLNSPLSDCRSTLVLFLDQRQAF
TQLNETNQTELLCYQALLAPSMRGDLGAFFASLTGQSPVSVPELRARFPQLLQETDPALQRDLKVCRARLEQ
LLEEDLQREDLHWPLAYALAWLRVSGGNSVLAPWVRHQFPEVGRLISELRDMPCEREDCQYCQTTHDPRHEL
KRYFGFPDFRYEGPGESLQHDIVLAGMRGQHVLAILATGGGKSLCYQLPALNRFHRNGSLTVIVSPLQSLMK
DQVDGLLERNVQCAAALNGLLTMPERAEVLEKIQMGDVGILLVSPEQFRNKAFRRAIRQRQVGAWIFDEAHC
LSKWGSDFRPDYLYVSRFIRVYTGDQPLAQIGCFTATAKPDVLADIQSHFRESLGIEFKVFPGGHERTNLHF
DVLPCTKAEKWSRTDGLLREHLDAQEGGAVVFVSSRKSAEELSDFLIGQGWPCKHFHAGLEPNTKTDIQDDF
KAGQLRIIVATNAFGMGVDKADIRLVVHADIPGSLENYLQEAGRAGRDQGDARCVLLYDPQDIETQFGMSER
SKLSIRDIQQILRKLRNESNRRKGGKLVITAGEILLDDDVETSFSADERDAETKVVTAVAWLERGDYLKREE
NHTQIFPARLDVSEEEAEKRLLKAELPQRRLEEFKAILRFLYGADVDERVNTDQLMQLTSLESEEVASALKQ
LEEMGLLVNDSQITLYVRHGVTGASSQRLSSSLELERALLQCLPEQAPDAEHGDWQDLNLPALTAELKSATG
LDELLPLHVLRLLRSLAQDHDADDQQRSSLELRQLNRDYLKLRIKGGHSWAKIVGFGDVRRALASKFLELLV
GKLPAGLRGADLLVETSFGELLQVIEGDLELPHLIPPNRRRKVIEHVLLYLHRQDILTLNHGMTVMRRAMTI
EVKKEDKRKTFLKEDYLRLDEHYREKRIQVHVMREYAEVALKEMAEALRLVLDYFTDSKQAFIKRHFNGRED
VLKLATSEESWKSIIESLSTTQKLIVADDDDINRLVLAGPGSGKTRVIVHRIAYLLRVRRVPATSIVALTFN
RHAANEIRKRLLALVGADAYGVSVLTYHSMAMRLTGTRFERGATVDERALKQVLSDAVELLEGKRNIEGEDD
LREQLLRGYRYILVDEYQDIDDLQYRLVSALAGRHAEEDGRLCIMAVGDDDQNIYAWRDTNNRYIERFREDY
EASTSFLVDNYRSSLRIIEAANQLIGQNLARLKEANPIRIDRARQELPAGGLWEERDEQRKGQVMRLLIDPS
DREQGNLQAQAAMVELGRLLALEQGSWNGCAVLARTHRYLWPIQAWCEQHDIPYFLAADKETALPITRQRSF
VAAIDYMREIKGALCAADAWQRLSGSNQLVEAEWKSFFQTAFEQMRGELGDCQLGSGALIDWLYDYARELRQ
QSKDGLYLGTVHSAKGLEFRHVVLLDGGWSTQVDTLADERRLYYVGVTRAEQTLTLCEFADGNPFSRSLMRD
VQQHEFQGQPLPGLEVRFQQLTLKEIDIGFAGRQSPHAQIHKAIEALREGDPLTLKEEAGRYQLLDRQGNVV
GRTAKSFQPQIGFDQCEVAAVMVRFTEDSEEQYRDLNKCERWEVVVPRGRG*
AnnotationID:6144 GeneID:6143
Modification Date/Time:
2005-10-12 15:03:24
GeneProduct: putative DNA helicase
Cell Localization Confidence Code: 5
Functional Category: (11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: gi|30180009| emb|CAD84004.1| recQ; ATP-dependent DNA helicase [Nitrosomonas europaea
ATCC 19718]
Length=1457
Score = 2702 bits (7003), Expect = 0.0
Identities = 1357/1457 (93%), Positives = 1398/1457 (95%), Gaps = 0/1457 (0%)
gi|63256852| gb|AAY37948.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae
pv. syringae B728a]
Length=1473
Score = 2061 bits (5341), Expect = 0.0
Identities = 1026/1469 (69%), Positives = 1209/1469 (82%), Gaps = 4/1469 (0%)
gi|53756057| gb|AAU90348.1| ATP-dependent DNA helicase, UvrD/REP family [Methylococcus capsulatus
str. Bath]
Length=1469
Score = 1196 bits (3094), Expect = 0.0
Identities = 683/1481 (46%), Positives = 929/1481 (62%), Gaps = 48/1481 (3%)
Structural Features: COG0514 , RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].
CD-Length = 590 residues, only 62.7% aligned
Score = 328 bits (841), Expect = 5e-90
pfam00580 , UvrD-helicase, UvrD/REP helicase.
CD-Length = 496 residues, only 73.4% aligned
Score = 135 bits (342), Expect = 4e-32
COG0210 , UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].
CD-Length = 655 residues, only 57.7% aligned
Score = 128 bits (323), Expect = 5e-30