ViewGene

Locus Name:
GeneID:
Location:

GeneID:6142
TrivialName: PA14_28820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28820
PAO1 Ortholog Locus:
Sequence Length:2499
Protein Length:832
Start: 2485638
Stop: 2488136
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO56355.1| (AE016866) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 481/868 (55%), Positives = 586/868 (67%), Gaps = 70/868 (8%)
Sequence:
ATGGCAAGGAAGCGCAGAGGTAGAGGGAAGCCCAATTTGTCTGGCGGATTGATCCTCGCGGCTATCGTGCTG
GGCCTTCTCGCTTCTATTCCTACGCAGGCCTGGATGGTTTTGATCGGCGTAGCGATTATCGGCTTTGGCGTA
TGGCTGATAGTGAGGTTCTCCGATAAACCGTCGGTCGTAGCTTTCCCTCCTAGCAAGCGCCCCTCTTCTTCG
AAGGCAACACGGTCAGACAATGCAGCTCTGTCCCATGATCTGACATTTTCTCTAGATGAAGTCGCTCCCTTA
CAGGCAAATACGCTCACTCGTACTCAGAAAAAGGTTTCGGCTCAGGCTCCAGCGTCATCGTCATCGTCTGAG
AGGAGAGATAGCGCCGGGCTGTTTACCGTGACGCTTGAGGTATCGGAGCGGCCGTCCCATCGAATCCCAAGT
GCGCCTGCTAATTTGGCCGTTTCTAAAGCGCGTTGGTTACCTCAGGACGAATTCATCGAGATTGCCGGAGAG
AAGATTTCAGGCGGGATGATTTATGTCGGCGAGGATCGGAACAGCCGTTATGGTTCCTCGGAGCCCAGCCTG
ATCAACCCCAAGCTTAAGGTCGCGCGAGGTATTGTAGATATCGCCGAGCGCCTTACTTCCTACTGGTCGAGT
TACGACAGCATCTCCCCTGAAGCACGACGTGCTTATCTACAATGGCTATCCAGCGGTCGGAAAGCCCCGCAT
GCCAACATCGGCTACGTCTTCCTGTTCTTCTATGGTCTGGAACGCAGGGTGTTTGTCGATGCGAAGACGGAT
CGAGCAGCGGCCGCCGAGACTCCCAGCATCATTGCCGAAGTCGAGAGGTTGCTCTCAATTTATGGTGAGAAC
CATTCCTTCAATAACTATGCAAGCCGCTTCGTGGACTTCCTTCGTCAGGGCGCGGTGCTTACTCGACTCTAT
TTGGAAACACCACCAACACCGTTGCCTTACGGCTACGAAATGCCTATCGAGTTGCGTATCGGCTTGGGGCAG
TTGGCCGTCGATAAGCATCCGCTACCAGCCAACTGGGCATTGGCCTGGGTGCTATCCGATCACAGCATCGGA
AAACGGACACCCGTAACTCGCTGTGAGGATGCATTTGCCCGCTTGTTTCATATGCGCTACGAAGAGCGGTAT
GGCGCAGGGATAGTCCTCCCACAGAACAAAACTCGGTTGAAATTTCAGTACAACACCGCCTCTGCGGGGCTA
CCTTCCCAGGAATTGGATGGCCTATCCGAAATTCCCGACGTAACTGCCACCTCTGCAGCGCGGAAGAAGCTG
CAGCAACTGGTCGACGAATGTACGGTGCAATTGGAGCCATACAGCCGTTATCTCGGCCGTAATCCTGGCGCA
CCAGATGCATTGGAAGGGCTCCTACAATTACCTGTTAGCCTCTGGCCTGCGGGCGCTCGGGCAGAGCTTGAT
GAGTTGAAGCAACGCATCGGCGACGGCATGGTGGTCATGAGCTTCGGTGAGCTGGCGGGGCGGCTGCAGAGT
GCAGGAGCCTTGTCGCGAGACAAAGTCCTCACACTGGCCCGAGCTTTGGAATCATTGCACATTGGTATCGAG
CCAGATGTACTGGCAGGCAGCAGAACGCCCAAGCCTGAGGATCGCGTGGCGCTCTTCGCGACCCAGGCTGAA
GATGGTGATCTACGTGCTTCACCGGCATACAGCGTCGCTTCTGTCACTTTGGATCTCGCCTGCGCTGTGGCG
GCTGCCGATGGCGACACCTCGCCGAAGGAAATCATGCTGCTATCCCAGCATGTCGACTCTTGGAGCCATTTG
AGTGGCGCGCATCGGAAGCGTCTGAAGGCCCATTTGCGTCTGCAGCTCAACCAGCCGCCAACTTTCCAGAGT
TTGAAGAAGAAGCTGGAGCCCTTGGCCGACTCGGCGAGGAGGGCAGTGGCGGCATTCCTTGCCCACCTGGCG
CAAGTAGATGGTGAGGTCAGCCCAGCAGAGGTGAAGCTGCTTGAGCGTGTCTACAAGACCCTACAATTAGAT
TCGCAATCGTTGTACAGCGACCTTCATGTCGTAGCCAGTGGCAATCCTGCTGGTTCATTGCAGGCCACGCCT
GCTGCTCCTGGGGCAACTCAGTCCAAGACCATTGGCGGCTTTGCTTTGGATCACGATCGCATTGCTCAACTG
CAGCGTGAGACCGAACAAGTGTCAGCGCTGTTGGCTCAGGTCTTTGTCGGCGAGCAGCCTGTTGAGCCGGAG
GAGGTTTCCATTGAAGAGGCCGGTGAGGATACCTCTGGCGTCTGCGGATTGGATGCCGATCTCTCCGCCTTT
CTACGTGTGCTTGTATCCCGTAATGAGTGGACGCGAGACGAGTTGGAGGCGGTAGCAAGCGATATGGAACTC
ATGCTCGATGGGGCATTGGAGCAGATCAATGATATGGCCTTCGAGCATTTCGATATGCCCGTCACTGAGGGT
GAAGATCCCTTCGAAATCAATCCAGACGTCATGGAAAATCTACCGCTATGA
Translation:
MARKRRGRGKPNLSGGLILAAIVLGLLASIPTQAWMVLIGVAIIGFGVWLIVRFSDKPSVVAFPPSKRPSSS
KATRSDNAALSHDLTFSLDEVAPLQANTLTRTQKKVSAQAPASSSSSERRDSAGLFTVTLEVSERPSHRIPS
APANLAVSKARWLPQDEFIEIAGEKISGGMIYVGEDRNSRYGSSEPSLINPKLKVARGIVDIAERLTSYWSS
YDSISPEARRAYLQWLSSGRKAPHANIGYVFLFFYGLERRVFVDAKTDRAAAAETPSIIAEVERLLSIYGEN
HSFNNYASRFVDFLRQGAVLTRLYLETPPTPLPYGYEMPIELRIGLGQLAVDKHPLPANWALAWVLSDHSIG
KRTPVTRCEDAFARLFHMRYEERYGAGIVLPQNKTRLKFQYNTASAGLPSQELDGLSEIPDVTATSAARKKL
QQLVDECTVQLEPYSRYLGRNPGAPDALEGLLQLPVSLWPAGARAELDELKQRIGDGMVVMSFGELAGRLQS
AGALSRDKVLTLARALESLHIGIEPDVLAGSRTPKPEDRVALFATQAEDGDLRASPAYSVASVTLDLACAVA
AADGDTSPKEIMLLSQHVDSWSHLSGAHRKRLKAHLRLQLNQPPTFQSLKKKLEPLADSARRAVAAFLAHLA
QVDGEVSPAEVKLLERVYKTLQLDSQSLYSDLHVVASGNPAGSLQATPAAPGATQSKTIGGFALDHDRIAQL
QRETEQVSALLAQVFVGEQPVEPEEVSIEEAGEDTSGVCGLDADLSAFLRVLVSRNEWTRDELEAVASDMEL
MLDGALEQINDMAFEHFDMPVTEGEDPFEINPDVMENLPL*
AnnotationID:6143GeneID:6142
AnnotatorUID: danlee
Modification Date/Time: 2005-10-12 16:04:43
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|28870041|ref|NP_792660.1|  hypothetical protein PSPTO2859 [Pseudomonas syringae 
pv. tomato str. DC3000]
     Length=866
     Score =  849 bits (2194),  Expect = 0.0
     Identities = 481/868 (55%), Positives = 586/868 (67%), Gaps = 70/868 (8%)

gi|51596543|ref|YP_070734.1|  hypothetical protein YPTB2219 [Yersinia pseudotuberculosis IP 32953]
     Length=798
     Score =  538 bits (1387),  Expect = 3e-151
     Identities = 320/844 (37%), Positives = 462/844 (54%), Gaps = 75/844 (8%)

gi|45436739|gb|AAS62293.1|  hypothetical protein YP2082 [Yersinia pestis biovar Medievalis str. 91001]
gi|22126017|ref|NP_669440.1|  hypothetical protein y2129 [Yersinia pestis KIM]
     Length=798
     Score =  536 bits (1381),  Expect = 1e-150
     Identities = 320/844 (37%), Positives = 461/844 (54%), Gaps = 75/844 (8%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:12150
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29403
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6142

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198527 gb|AAO56355.1| (AE016866) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 904 53.53 64.93 110 2257.0
GC ORFID: 49144How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2468288Stop: 2465790
Length: 2499
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCAAGGAAGCGCAGAGGTAGAGGGAAGCCCAATTTGTCTGGCGGATTGATCCTCGCGGCTATCGTGCTG
GGCCTTCTCGCTTCTATTCCTACGCAGGCCTGGATGGTTTTGATCGGCGTAGCGATTATCGGCTTTGGCGTA
TGGCTGATAGTGAGGTTCTCCGATAAACCGTCGGTCGTAGCTTTCCCTCCTAGCAAGCGCCCCTCTTCTTCG
AAGGCAACACGGTCAGACAATGCAGCTCTGTCCCATGATCTGACATTTTCTCTAGATGAAGTCGCTCCCTTA
CAGGCAAATACGCTCACTCGTACTCAGAAAAAGGTTTCGGCTCAGGCTCCAGCGTCATCGTCATCGTCTGAG
AGGAGAGATAGCGCCGGGCTGTTTACCGTGACGCTTGAGGTATCGGAGCGGCCGTCCCATCGAATCCCAAGT
GCGCCTGCTAATTTGGCCGTTTCTAAAGCGCGTTGGTTACCTCAGGACGAATTCATCGAGATTGCCGGAGAG
AAGATTTCAGGCGGGATGATTTATGTCGGCGAGGATCGGAACAGCCGTTATGGTTCCTCGGAGCCCAGCCTG
ATCAACCCCAAGCTTAAGGTCGCGCGAGGTATTGTAGATATCGCCGAGCGCCTTACTTCCTACTGGTCGAGT
TACGACAGCATCTCCCCTGAAGCACGACGTGCTTATCTACAATGGCTATCCAGCGGTCGGAAAGCCCCGCAT
GCCAACATCGGCTACGTCTTCCTGTTCTTCTATGGTCTGGAACGCAGGGTGTTTGTCGATGCGAAGACGGAT
CGAGCAGCGGCCGCCGAGACTCCCAGCATCATTGCCGAAGTCGAGAGGTTGCTCTCAATTTATGGTGAGAAC
CATTCCTTCAATAACTATGCAAGCCGCTTCGTGGACTTCCTTCGTCAGGGCGCGGTGCTTACTCGACTCTAT
TTGGAAACACCACCAACACCGTTGCCTTACGGCTACGAAATGCCTATCGAGTTGCGTATCGGCTTGGGGCAG
TTGGCCGTCGATAAGCATCCGCTACCAGCCAACTGGGCATTGGCCTGGGTGCTATCCGATCACAGCATCGGA
AAACGGACACCCGTAACTCGCTGTGAGGATGCATTTGCCCGCTTGTTTCATATGCGCTACGAAGAGCGGTAT
GGCGCAGGGATAGTCCTCCCACAGAACAAAACTCGGTTGAAATTTCAGTACAACACCGCCTCTGCGGGGCTA
CCTTCCCAGGAATTGGATGGCCTATCCGAAATTCCCGACGTAACTGCCACCTCTGCAGCGCGGAAGAAGCTG
CAGCAACTGGTCGACGAATGTACGGTGCAATTGGAGCCATACAGCCGTTATCTCGGCCGTAATCCTGGCGCA
CCAGATGCATTGGAAGGGCTCCTACAATTACCTGTTAGCCTCTGGCCTGCGGGCGCTCGGGCAGAGCTTGAT
GAGTTGAAGCAACGCATCGGCGACGGCATGGTGGTCATGAGCTTCGGTGAGCTGGCGGGGCGGCTGCAGAGT
GCAGGAGCCTTGTCGCGAGACAAAGTCCTCACACTGGCCCGAGCTTTGGAATCATTGCACATTGGTATCGAG
CCAGATGTACTGGCAGGCAGCAGAACGCCCAAGCCTGAGGATCGCGTGGCGCTCTTCGCGACCCAGGCTGAA
GATGGTGATCTACGTGCTTCACCGGCATACAGCGTCGCTTCTGTCACTTTGGATCTCGCCTGCGCTGTGGCG
GCTGCCGATGGCGACACCTCGCCGAAGGAAATCATGCTGCTATCCCAGCATGTCGACTCTTGGAGCCATTTG
AGTGGCGCGCATCGGAAGCGTCTGAAGGCCCATTTGCGTCTGCAGCTCAACCAGCCGCCAACTTTCCAGAGT
TTGAAGAAGAAGCTGGAGCCCTTGGCCGACTCGGCGAGGAGGGCAGTGGCGGCATTCCTTGCCCACCTGGCG
CAAGTAGATGGTGAGGTCAGCCCAGCAGAGGTGAAGCTGCTTGAGCGTGTCTACAAGACCCTACAATTAGAT
TCGCAATCGTTGTACAGCGACCTTCATGTCGTAGCCAGTGGCAATCCTGCTGGTTCATTGCAGGCCACGCCT
GCTGCTCCTGGGGCAACTCAGTCCAAGACCATTGGCGGCTTTGCTTTGGATCACGATCGCATTGCTCAACTG
CAGCGTGAGACCGAACAAGTGTCAGCGCTGTTGGCTCAGGTCTTTGTCGGCGAGCAGCCTGTTGAGCCGGAG
GAGGTTTCCATTGAAGAGGCCGGTGAGGATACCTCTGGCGTCTGCGGATTGGATGCCGATCTCTCCGCCTTT
CTACGTGTGCTTGTATCCCGTAATGAGTGGACGCGAGACGAGTTGGAGGCGGTAGCAAGCGATATGGAACTC
ATGCTCGATGGGGCATTGGAGCAGATCAATGATATGGCCTTCGAGCATTTCGATATGCCCGTCACTGAGGGT
GAAGATCCCTTCGAAATCAATCCAGACGTCATGGAAAATCTACCGCTATGA