ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6141

TrivialName: PA14_28840

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_28840

PAO1 Ortholog Locus:

Sequence Length: 2211

Protein Length: 736

Start: 2489403

Stop: 2491613

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: dbj|BAB75030.1| (AP003592) ATP-dependent helicase [Nostoc sp. PCC 7120] Identities = 253/724 (34%), Positives = 392/724 (54%), Gaps = 23/724 (3%)

Sequence:

ATGAGCTTGCCACCTTCCAGCTCTGAGTCCACTGGGTTCACATTACTCGAGCCAAGAATTCAGCGCTGGATC
TGGGCCGAGGGCTGGACGTCCCTGCGGGACGCTCAGGAGCGCGCTATTCCGGCCCTCTTGGGGGCGGATCAG
GATGTGATTATCGCGGCCGCGACAGCGGCGGGGAAAACTGAAGCTGCTTTCCTGCCCATTCTCAGCAACCTT
CTGCAGGATCAGGACTCGCCTGGAGCTGTGCTGTATATCAGTCCGCTGAAGGCGCTGATCAATGATCAATGG
GATCGCCTAACCAGGCTTTGTGATGATTTAGAGCTGCCTGTTATCGCTTGGCATGGAGATATTTCCGCAAGC
CGCAAACATCGTTTCCTAAAGTTTCCGCAAGGCATTCTGCTGATTACTCCAGAGTCGCTTGAGGCGCTATTC
GTGAACAGGGGAACAAGCCTCGCTGGGCTGTTTGTAAATATGCGCTACCTGGTAGTGGATGAGCTGCATGCC
TTCATCGGCAGCGAGCGGGGCAAACAACTGCAGTCGCTTATGCATCGTGTGGAGTTGGTCATTGATCGACCT
CTACCCAGAGTAGGGCTTTCCGCGACACTTGGAGATATGGCGCTGGCGGCAGCCTTCCTGCGTCCCAATGCT
CCTGAGCATGTATCGGTGATTGAGTCGAAGGGGGCTAGCCAGGTACTGAAGGTTCAAATCAGGGGATATGAG
GAGGCTCGACAGAACCTATCGGCGATATCTGAGGGTGAAGAGGTCTTCTCTGCTGACCATGCCATTGCAGAA
CATCTCTTTCAGGTGTTGAGGGGTAGCAATAACCTGATCTTTCCCAACAGCCGATCCCAGGTGGAGTGGTTC
GCCGATAACCTGAGGCGGCGTTGCGAGCAGGATGGCGTGCCGAACGAGTTCTGGCCACATCACGGGAGTTTG
GCGAAGGATATTCGAGAGGAAACCGAGAAAGCTCTGAAAGCTGGTGATCGACCTGCCACTGCAGTTTGCACC
ACAACACTAGAACTCGGGGTGGACATTGGCAGCATCAAGACGGTAGCGCAGATCGGGCCTCCACCGTCAGTT
GCTAGCCTCCGTCAGCGCTTGGGGCGATCCGGTCGCCGTCCAGGTGAGGCAGCCATTCTCCGAAGCTACTGT
AAGGAGCGGCAGTTGGATGATGGCTCTCCATTGTCGGCTCGGCTTCGCCAAGACCTGGTGCAGAGCATCGCT
ATGATCAGGCTGCTAATGCAAGGATGGTTTGAACCGCCTCGTGTTCAGGGGCTGCATTTGTCGACGTTAGTA
CAGCAGTGCCTCTCGGTGATTACCCAGCGAGGCGGGGCAACGGCAGCAGAGCTGTGGAGTACTCTGATTCGA
AGTGGCCCGTTCGCCGGAGTGGAGCAGGGCAGTTTCCTCAGCTTGCTTCGTACTCTTGGCGAGCGCGATTTG
ATTGCTCAGGAAGCATCGGGTCTCCTACTGCCCGGAGTGCTGGGTGAGCGTATGATCAATCATTACGACTTC
TACAGTGCATTCGTCAGCAACGAGGAGTTCCGCCTGGTATGCGATGGCAAACCACTTGGAGCATTACCGGTA
TCCAGGCCACTGACTATCGACCAACGCATTATCTTTGCTGGACGACGCTGGCGAGTCACGGATGTGGATACC
GAGGCCAAGGTTATCGTCGTGAGATCTGACCCTGGTGGTGCTCCACCGTCCTTCGACGGACTTGGGGCTCGT
GTCCATGATCGTGTCAGGCAAGAGATGAGGACAGTTTTACTTGAGGCGGACACCTATCCCTATCTTGACACT
GCAGCTCAGAAGCTCTTAGCCGAGGCTCGTAGCACCTTCTCGGATCTTGGGTTGGCGCACTCAAGCATGATC
GAAAGTGGAGGTAAGACTTACCTCTTTACCTGGCAAGGAGATTGGGCGAACGATGCTCTGGCCATCTTGTTA
ACTCATATGGGGCTACCCAGCGAGAATGTCGGTCTGGTCACTGAGGTAGAGGGGGATAGGGCTTCGCTTGAG
AGCAAACTGCAAGAGATAGCTGGATGGGGTGGTATTGATGAGCCTACCGTTTTGGGTGACGTACAGAACATG
GTTCAAGAAAAATGGGATTGGGCGCTTCCGCCGAAATTACTCATACAGTCGTACGCCACGATGTATCTGGAC
TTGGAGGGAGCAAAAGAGTTGGCAAATATTCTGTTGAGTTGTCGACACTGA

Translation:

MSLPPSSSESTGFTLLEPRIQRWIWAEGWTSLRDAQERAIPALLGADQDVIIAAATAAGKTEAAFLPILSNL
LQDQDSPGAVLYISPLKALINDQWDRLTRLCDDLELPVIAWHGDISASRKHRFLKFPQGILLITPESLEALF
VNRGTSLAGLFVNMRYLVVDELHAFIGSERGKQLQSLMHRVELVIDRPLPRVGLSATLGDMALAAAFLRPNA
PEHVSVIESKGASQVLKVQIRGYEEARQNLSAISEGEEVFSADHAIAEHLFQVLRGSNNLIFPNSRSQVEWF
ADNLRRRCEQDGVPNEFWPHHGSLAKDIREETEKALKAGDRPATAVCTTTLELGVDIGSIKTVAQIGPPPSV
ASLRQRLGRSGRRPGEAAILRSYCKERQLDDGSPLSARLRQDLVQSIAMIRLLMQGWFEPPRVQGLHLSTLV
QQCLSVITQRGGATAAELWSTLIRSGPFAGVEQGSFLSLLRTLGERDLIAQEASGLLLPGVLGERMINHYDF
YSAFVSNEEFRLVCDGKPLGALPVSRPLTIDQRIIFAGRRWRVTDVDTEAKVIVVRSDPGGAPPSFDGLGAR
VHDRVRQEMRTVLLEADTYPYLDTAAQKLLAEARSTFSDLGLAHSSMIESGGKTYLFTWQGDWANDALAILL
THMGLPSENVGLVTEVEGDRASLESKLQEIAGWGGIDEPTVLGDVQNMVQEKWDWALPPKLLIQSYATMYLD
LEGAKELANILLSCRH*

AnnotationID:6142 GeneID:6141

AnnotatorUID: danlee

Modification Date/Time: 2005-10-12 16:04:26

Gene Name:

Confidence Code: 3

GeneProduct: putative helicase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (11) DNA replication, recombination, modification and repair

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1201, pfam00270

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|47572683|ref|ZP_00242725.1|  COG1201: Lhr-like helicases [Rubrivivax gelatinosus PM1]
     Length=734
     Score =  729 bits (1882),  Expect = 0.0
     Identities = 379/717 (52%), Positives = 491/717 (68%), Gaps = 4/717 (0%)

gi|68242348|gb|EAN24569.1|  Helicase, C-terminal:Type III restriction enzyme, res subunit:
DEAD/DEAH box helicase, N-terminal [Pelodictyon phaeoclathratiforme BU-1]
     Length=734
     Score =  716 bits (1849),  Expect = 0.0
     Identities = 377/732 (51%), Positives = 492/732 (67%), Gaps = 4/732 (0%)

Structural Features:

COG1201, Lhr, Lhr-like helicases [General function prediction only].
             CD-Length = 814 residues, only  77.1% aligned
             Score =  304 bits (781), Expect = 2e-83

pfam00270, DEAD, DEAD/DEAH box helicase. 
             CD-Length = 206 residues,  93.7% aligned
             Score =  108 bits (270), Expect = 3e-24

Genomic Context:

Comment:

ReferenceID:12148

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29401

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36299

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6141_cdd.html

URL:

GC ORFID: `49143`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2464523`	Stop: `2462313`
Length: `2211`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAGCTTGCCACCTTCCAGCTCTGAGTCCACTGGGTTCACATTACTCGAGCCAAGAATTCAGCGCTGGATC TGGGCCGAGGGCTGGACGTCCCTGCGGGACGCTCAGGAGCGCGCTATTCCGGCCCTCTTGGGGGCGGATCAG GATGTGATTATCGCGGCCGCGACAGCGGCGGGGAAAACTGAAGCTGCTTTCCTGCCCATTCTCAGCAACCTT CTGCAGGATCAGGACTCGCCTGGAGCTGTGCTGTATATCAGTCCGCTGAAGGCGCTGATCAATGATCAATGG GATCGCCTAACCAGGCTTTGTGATGATTTAGAGCTGCCTGTTATCGCTTGGCATGGAGATATTTCCGCAAGC CGCAAACATCGTTTCCTAAAGTTTCCGCAAGGCATTCTGCTGATTACTCCAGAGTCGCTTGAGGCGCTATTC GTGAACAGGGGAACAAGCCTCGCTGGGCTGTTTGTAAATATGCGCTACCTGGTAGTGGATGAGCTGCATGCC TTCATCGGCAGCGAGCGGGGCAAACAACTGCAGTCGCTTATGCATCGTGTGGAGTTGGTCATTGATCGACCT CTACCCAGAGTAGGGCTTTCCGCGACACTTGGAGATATGGCGCTGGCGGCAGCCTTCCTGCGTCCCAATGCT CCTGAGCATGTATCGGTGATTGAGTCGAAGGGGGCTAGCCAGGTACTGAAGGTTCAAATCAGGGGATATGAG GAGGCTCGACAGAACCTATCGGCGATATCTGAGGGTGAAGAGGTCTTCTCTGCTGACCATGCCATTGCAGAA CATCTCTTTCAGGTGTTGAGGGGTAGCAATAACCTGATCTTTCCCAACAGCCGATCCCAGGTGGAGTGGTTC GCCGATAACCTGAGGCGGCGTTGCGAGCAGGATGGCGTGCCGAACGAGTTCTGGCCACATCACGGGAGTTTG GCGAAGGATATTCGAGAGGAAACCGAGAAAGCTCTGAAAGCTGGTGATCGACCTGCCACTGCAGTTTGCACC ACAACACTAGAACTCGGGGTGGACATTGGCAGCATCAAGACGGTAGCGCAGATCGGGCCTCCACCGTCAGTT GCTAGCCTCCGTCAGCGCTTGGGGCGATCCGGTCGCCGTCCAGGTGAGGCAGCCATTCTCCGAAGCTACTGT AAGGAGCGGCAGTTGGATGATGGCTCTCCATTGTCGGCTCGGCTTCGCCAAGACCTGGTGCAGAGCATCGCT ATGATCAGGCTGCTAATGCAAGGATGGTTTGAACCGCCTCGTGTTCAGGGGCTGCATTTGTCGACGTTAGTA CAGCAGTGCCTCTCGGTGATTACCCAGCGAGGCGGGGCAACGGCAGCAGAGCTGTGGAGTACTCTGATTCGA AGTGGCCCGTTCGCCGGAGTGGAGCAGGGCAGTTTCCTCAGCTTGCTTCGTACTCTTGGCGAGCGCGATTTG ATTGCTCAGGAAGCATCGGGTCTCCTACTGCCCGGAGTGCTGGGTGAGCGTATGATCAATCATTACGACTTC TACAGTGCATTCGTCAGCAACGAGGAGTTCCGCCTGGTATGCGATGGCAAACCACTTGGAGCATTACCGGTA TCCAGGCCACTGACTATCGACCAACGCATTATCTTTGCTGGACGACGCTGGCGAGTCACGGATGTGGATACC GAGGCCAAGGTTATCGTCGTGAGATCTGACCCTGGTGGTGCTCCACCGTCCTTCGACGGACTTGGGGCTCGT GTCCATGATCGTGTCAGGCAAGAGATGAGGACAGTTTTACTTGAGGCGGACACCTATCCCTATCTTGACACT GCAGCTCAGAAGCTCTTAGCCGAGGCTCGTAGCACCTTCTCGGATCTTGGGTTGGCGCACTCAAGCATGATC GAAAGTGGAGGTAAGACTTACCTCTTTACCTGGCAAGGAGATTGGGCGAACGATGCTCTGGCCATCTTGTTA ACTCATATGGGGCTACCCAGCGAGAATGTCGGTCTGGTCACTGAGGTAGAGGGGGATAGGGCTTCGCTTGAG AGCAAACTGCAAGAGATAGCTGGATGGGGTGGTATTGATGAGCCTACCGTTTTGGGTGACGTACAGAACATG GTTCAAGAAAAATGGGATTGGGCGCTTCCGCCGAAATTACTCATACAGTCGTACGCCACGATGTATCTGGAC TTGGAGGGAGCAAAAGAGTTGGCAAATATTCTGTTGAGTTGTCGACACTGA