ViewGene
Locus Name:
GeneID:
Location:

GeneID:614
TrivialName: PA14_02050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02050
PAO1 Ortholog Locus:PA0164
Sequence Length:1617
Protein Length:538
Start: 185692
Stop: 187308
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03554.1|AE004454_6 (AE004454) probable gamma-glutamyltranspeptidase [Pseudomonas aeruginosa PAO1]
Identities = 533/538 (99%), Positives = 534/538 (99%)
Sequence:
ATGCTCGACTTCTCCGCCCACGCGCTTCCCTACGCCTCGCAACGTTCGCCGGTCCATGCCCGCCGCGGCATG
GTCGCCACCTCGCAGCCGCAGGCGGCGCAGGTCGGGTTGGAGATATTGCGCCGTGGCGGCAACGCCATCGAC
GCGGCGATCGCCACCGCCGCCGCGCTGACGGTGGTCGAGCCGACCGGCTGCGGGATCGGCGGCGACGCCTTC
GCCCTGGTCTGGACCCGCGGCCGCCTGCACGGCCTGGACGCCAGCGGGCGCGCGCCGGGCCTGCTCGATCGC
GAGCGGGTGCGCGCCGCCGGCCACGAGCGGATGCCGCTGTACGGCTGGACGCCGGTCACCGTGCCGGGCTGT
CCGGCGGCCTGGGCCGAACTGTCGCGGCGCTTCGGCAAATTGCCGTTCGAACAACTGCTGCGGCCGGCGATC
GAGCTGGCCCGCGATGGCTTCCCGGTCTCGCCGGTGATCGCCCGCCTGTGGCAAAGCGGCCTGGACAAGTTC
CGCGCGGCGTTGCCGCAGCGGCCCGAGCTGCGGGCCTGGTTCGACGAGTTCCTCATCGACGGCCGGGCGCCG
CGCGCCGGCGAGGTGTTCCGCCAGCCGGGCCAGGCCGACACCCTGGACGAGCTGGCGCGCAGCCAGTGCGAA
AGCTTCTATCGCGGCGAGCTGGCCAGGACCATCGTCGGCCACGCCGAGCGCAGCGGCGGCTACCTGCGCGCG
GAGGACCTGGCCGGCTACCAGGCGAAGTGGGTCGAACCGATCTCGCTGAACTACCGTGGCTATGACGTCTGG
GAGATTCCGCCGAGCGGCCAGGGCCTGATCGCCCTGATGACCCTGAACATCCTCAAGGGCTTCGAATTCGGC
GAGCGCGACTGCGCGCGGACCTGGCATCGCCAACTGGAGGCGATGAAGCTGGCGTACGTCGACGGGCTGCAC
TACATCAGCCAGCCGCAGTCGATGCGGGTCTCGGTCGAGGAACTGCTGCACGTGGACTACGCCGCCAGCCGC
CGCGCGCTGATCGGTGAGCGCGCGCTCGATCCCAGCCCCGGCCAGCCGAAGCCGGGCGGTACGGTGTACCTG
GCCTGTGGCGACGAGGAGGGCAACCTGGTCTCGTTCATCCAGAGCAACTACCACGGCTTCGGCTCCGGCGTG
GTGGTGCCTGGCACCGGCATCGCCTTGCAGAACCGCGGCGCCGAGTTCAGCCTCGATCCGGACCACGTGAAT
TGCCTGGAGCCGGGCAAGCAGACCTTCCACACCATCATTCCCGGTTTCCTCAGCAAGGACGGCGTGCCGCTC
GGCCCGTTCGGCGTGATGGGCGCCTATATGCAGCCGCAGGGCCACGTGCAGATGGTGATGAACCTGGTGGAC
TTCGGCCTCAACCCCCAGGCCGCCCTCGACGCGCCGCGCTGGCAGTGGCTGGGCGGGCTGCGCGTCGGCATC
GAACATGCCGCGCCGCGCGCGCTGGCGGCGGAGCTGGCGCAGCGTGGGCACCAGGTGGAGATCGCCTACGAC
TCGACCAGCTACGGGCGCGGCCAGATCGTCCTGCGCGACCCGGCCAGCGGCGTGCTCTGTGGCGGCACCGAG
CCGCGCACCGATTCGCAGATCGCGGTGTGGTGA
Translation:
MLDFSAHALPYASQRSPVHARRGMVATSQPQAAQVGLEILRRGGNAIDAAIATAAALTVVEPTGCGIGGDAF
ALVWTRGRLHGLDASGRAPGLLDRERVRAAGHERMPLYGWTPVTVPGCPAAWAELSRRFGKLPFEQLLRPAI
ELARDGFPVSPVIARLWQSGLDKFRAALPQRPELRAWFDEFLIDGRAPRAGEVFRQPGQADTLDELARSQCE
SFYRGELARTIVGHAERSGGYLRAEDLAGYQAKWVEPISLNYRGYDVWEIPPSGQGLIALMTLNILKGFEFG
ERDCARTWHRQLEAMKLAYVDGLHYISQPQSMRVSVEELLHVDYAASRRALIGERALDPSPGQPKPGGTVYL
ACGDEEGNLVSFIQSNYHGFGSGVVVPGTGIALQNRGAEFSLDPDHVNCLEPGKQTFHTIIPGFLSKDGVPL
GPFGVMGAYMQPQGHVQMVMNLVDFGLNPQAALDAPRWQWLGGLRVGIEHAAPRALAAELAQRGHQVEIAYD
STSYGRGQIVLRDPASGVLCGGTEPRTDSQIAVW*
AnnotationID:623GeneID:614
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 07:07:46
Gene Name:
Confidence Code:3
GeneProduct:putative gamma-glutamyltranspeptidase
Cell Localization:()
Synonyms:PA0164
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative gamma-glutamyltransferase
Functional Category Confidence Code:5
COGs:COG0405,pfam01019
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB04586.1| (AP001510) cephalosporin acylase [Bacillus halodurans]
          Length = 539

 Score =  676 bits (1745), Expect = 0.0
 Identities = 326/536 (60%), Positives = 405/536 (75%), Gaps = 2/536 (0%)

>dbj|BAC15223.1| (AP004604) gamma-glutamyltranspeptidase [Oceanobacillus iheyensis
           HTE831]
          Length = 537

 Score =  654 bits (1688), Expect = 0.0
 Identities = 307/535 (57%), Positives = 396/535 (74%), Gaps = 1/535 (0%)








 
Structural Features:
COG0405, Ggt, Gamma-glutamyltransferase 
[Amino acid transport and metabolism]
CD-Length = 539 residues, 100.0% aligned
Score =  573 bits (1479), Expect = 2e-164
Identities = 235/550 (42%), Positives = 312/550 (56%), Gaps = 30/550 (5%)

pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase.
CD-Length = 504 residues, 100.0% aligned
Score =  525 bits (1353), Expect = 6e-150
Identities = 210/515 (40%), Positives = 281/515 (54%), Gaps = 29/515 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1231




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18373




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33535




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:614_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:614
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1044
                           PA0164_tr
                           translation of PA0164
                           538
                           99.07
                           99.25
                           0
                           2819.0
     

     
     
40670
                           gb|AAG03554.1|AE004454_6
                           (AE004454) probable gamma-glutamyltranspeptidase [Pseudomonas aeruginosa PAO1]
                           538
                           99.07
                           99.25
                           0
                           2819.0
     

     
     
40671
                           dbj|BAB04586.1|
                           (AP001510) cephalosporin acylase [Bacillus halodurans]
                           540
                           60.37
                           75.18
                           3
                           1746.0
     

     
     
40672
                           dbj|BAC15223.1|
                           (AP004604) gamma-glutamyltranspeptidase [Oceanobacillus iheyensis HTE831]
                           538
                           57.24
                           73.79
                           1
                           1689.0
     

     
     
40673
                           gb|AAF11089.1|AE001996_4
                           (AE001996) cephalosporin acylase [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           540
                           54.62
                           66.85
                           7
                           1457.0
     

     






      

          
GC ORFID: 43616How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0164Glimmer Score: 

          
Start: 5987031Stop: 5988647

          
Length: 1617


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0164 translation of PA0164Homolog Bit Score 1090.0

          
Other Homologs:  t_PA0164 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGACTTCTCCGCCCACGCGCTTCCCTACGCCTCGCAACGTTCGCCGGTCCATGCCCGCCGCGGCATG 
GTCGCCACCTCGCAGCCGCAGGCGGCGCAGGTCGGGTTGGAGATATTGCGCCGTGGCGGCAACGCCATCGAC 
GCGGCGATCGCCACCGCCGCCGCGCTGACGGTGGTCGAGCCGACCGGCTGCGGGATCGGCGGCGACGCCTTC 
GCCCTGGTCTGGACCCGCGGCCGCCTGCACGGCCTGGACGCCAGCGGGCGCGCGCCGGGCCTGCTCGATCGC 
GAGCGGGTGCGCGCCGCCGGCCACGAGCGGATGCCGCTGTACGGCTGGACGCCGGTCACCGTGCCGGGCTGT 
CCGGCGGCCTGGGCCGAACTGTCGCGGCGCTTCGGCAAATTGCCGTTCGAACAACTGCTGCGGCCGGCGATC 
GAGCTGGCCCGCGATGGCTTCCCGGTCTCGCCGGTGATCGCCCGCCTGTGGCAAAGCGGCCTGGACAAGTTC 
CGCGCGGCGTTGCCGCAGCGGCCCGAGCTGCGGGCCTGGTTCGACGAGTTCCTCATCGACGGCCGGGCGCCG 
CGCGCCGGCGAGGTGTTCCGCCAGCCGGGCCAGGCCGACACCCTGGACGAGCTGGCGCGCAGCCAGTGCGAA 
AGCTTCTATCGCGGCGAGCTGGCCAGGACCATCGTCGGCCACGCCGAGCGCAGCGGCGGCTACCTGCGCGCG 
GAGGACCTGGCCGGCTACCAGGCGAAGTGGGTCGAACCGATCTCGCTGAACTACCGTGGCTATGACGTCTGG 
GAGATTCCGCCGAGCGGCCAGGGCCTGATCGCCCTGATGACCCTGAACATCCTCAAGGGCTTCGAATTCGGC 
GAGCGCGACTGCGCGCGGACCTGGCATCGCCAACTGGAGGCGATGAAGCTGGCGTACGTCGACGGGCTGCAC 
TACATCAGCCAGCCGCAGTCGATGCGGGTCTCGGTCGAGGAACTGCTGCACGTGGACTACGCCGCCAGCCGC 
CGCGCGCTGATCGGTGAGCGCGCGCTCGATCCCAGCCCCGGCCAGCCGAAGCCGGGCGGTACGGTGTACCTG 
GCCTGTGGCGACGAGGAGGGCAACCTGGTCTCGTTCATCCAGAGCAACTACCACGGCTTCGGCTCCGGCGTG 
GTGGTGCCTGGCACCGGCATCGCCTTGCAGAACCGCGGCGCCGAGTTCAGCCTCGATCCGGACCACGTGAAT 
TGCCTGGAGCCGGGCAAGCAGACCTTCCACACCATCATTCCCGGTTTCCTCAGCAAGGACGGCGTGCCGCTC 
GGCCCGTTCGGCGTGATGGGCGCCTATATGCAGCCGCAGGGCCACGTGCAGATGGTGATGAACCTGGTGGAC 
TTCGGCCTCAACCCCCAGGCCGCCCTCGACGCGCCGCGCTGGCAGTGGCTGGGCGGGCTGCGCGTCGGCATC 
GAACATGCCGCGCCGCGCGCGCTGGCGGCGGAGCTGGCGCAGCGTGGGCACCAGGTGGAGATCGCCTACGAC 
TCGACCAGCTACGGGCGCGGCCAGATCGTCCTGCGCGACCCGGCCAGCGGCGTGCTCTGTGGCGGCACCGAG 
CCGCGCACCGATTCGCAGATCGCGGTGTGGTGA