ViewGene
Locus Name:
GeneID:
Location:

GeneID:6139
TrivialName: PA14_28870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28870
PAO1 Ortholog Locus:
Sequence Length:297
Protein Length:98
Start: 2492021
Stop: 2492317
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05326.1|AE004620_5 (AE004620) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 85/88 (96%), Positives = 87/88 (98%)
Sequence:
GTGGTCTGTTCAGCTTTCGATGTGGCGCGGTCTTGCTACTACGTCCACCGTCTTCGACGTCGTCGGGTCGAT
GCGCGCCGCGTGGCGCTACGCAGCCAGCTCAACCAGTTGTTCTACCAGAGTCGGGGCTCGGCTGGCAGTCGC
AGCATCCTGGGCATGCTGCGCGAAGAGGGCGTGACCATTGGCCGTTTCCGAGTGCGTCGGTTGATGCGTGAG
CTGGGCTTGGTCAGCAAGCAACCGGGCTCGCACGCCTATAGACAGGCCATGTTGAGCGGCCGGATATCCCAA
ATCGGCTGA
Translation:
MVCSAFDVARSCYYVHRLRRRRVDARRVALRSQLNQLFYQSRGSAGSRSILGMLREEGVTIGRFRVRRLMRE
LGLVSKQPGSHAYRQAMLSGRISQIG*
AnnotationID:6140GeneID:6139
AnnotatorUID: danlee
Modification Date/Time: 2005-10-12 16:04:58
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|11347847|pir||G83403  conserved hypothetical protein PA1938 [Pseudomonas aeruginosa PAO1]
     Length=273
     Score =  169 bits (427),  Expect = 3e-41
     Identities = 85/88 (96%), Positives = 87/88 (98%), Gaps = 0/88 (0%)

gi|32454320|gb|AAP82949.1|  putative transposase [Pseudomonas aeruginosa]
     Length=280
     Score =  167 bits (423),  Expect = 9e-41
     Identities = 84/88 (95%), Positives = 87/88 (98%), Gaps = 0/88 (0%)

gi|15596175|ref|NP_249669.1|  hypothetical protein PA0978 [Pseudomonas aeruginosa PAO1]
     Length=275
     Score =  165 bits (418),  Expect = 3e-40
     Identities = 82/88 (93%), Positives = 86/88 (97%), Gaps = 0/88 (0%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15957




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29397




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6139
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7953
                           PA1938_tr
                           translation of PA1938
                           273
                           31.50
                           33.69
                           175
                           417.0
     

     
     
198520
                           gb|AAG05326.1|AE004620_5
                           (AE004620) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           273
                           31.13
                           33.69
                           175
                           414.0
     

     
     
198519
                           gb|AAP82949.1|
                           (AY273870) putative transposase [Pseudomonas aeruginosa]
                           280
                           30.71
                           32.85
                           182
                           417.0
     

     
     
7954
                           PA0978_tr
                           translation of PA0978
                           275
                           30.54
                           33.09
                           177
                           412.0
     

     
     
198521
                           gb|AAG04367.1|AE004531_4
                           (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           275
                           30.54
                           33.09
                           177
                           412.0
     

     






      

          
GC ORFID: 49141How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2461905Stop: 2461609

          
Length: 297


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1938 translation of PA1938Homolog Bit Score 168.0

          
Other Homologs:  t_PA1938 translation of PA1938 (BLASTP 168), t_RS04 280 Homolog: PAO978 / Putative transposase; recombination-related / P. aeruginosa / PAO1 (AAG04367) translation of RS04 (BLASTP 168), t_PA0978 translation of PA0978 (BLASTP 166)

          
GC ORF Sequence

           
GTGGTCTGTTCAGCTTTCGATGTGGCGCGGTCTTGCTACTACGTCCACCGTCTTCGACGTCGTCGGGTCGAT 
GCGCGCCGCGTGGCGCTACGCAGCCAGCTCAACCAGTTGTTCTACCAGAGTCGGGGCTCGGCTGGCAGTCGC 
AGCATCCTGGGCATGCTGCGCGAAGAGGGCGTGACCATTGGCCGTTTCCGAGTGCGTCGGTTGATGCGTGAG 
CTGGGCTTGGTCAGCAAGCAACCGGGCTCGCACGCCTATAGACAGGCCATGTTGAGCGGCCGGATATCCCAA 
ATCGGCTGA