ViewGene
Locus Name:
GeneID:
Location:

GeneID:6132
TrivialName: PA14_29390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29390
PAO1 Ortholog Locus:PA2685
Sequence Length:2070
Protein Length:689
Start: 2544083
Stop: 2546152
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06073.1|AE004696_7 (AE004696) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 687/689 (99%), Positives = 688/689 (99%)
Sequence:
ATGCTGTTCTCCCAACATACCCGTCTGGTGCACGTGGACTCCCCGCTGGGGCCCGAGGTCCTGCAACTGCAA
CGGCTGGAAGGCCGCGAGGAGCTGGGCCGGCTGTTCAGCCACGAGCTCGAACTGGTCTCGAGCAATCCCGCC
TTGCCTCTGGATGCCCTGTTGGGCAAGCCGATGAGCCTCGCGCTGGAACTCCCCGGCGGTAGCCGGCGGCAC
TTCCACGGCATCGTCGCGCGCTGCAGCCAGGGCGCCGGCGCCGGCCAGTTCGCCAGCTACCAGGTCACCCTG
CGGCCCTGGCTGTGGCTGCTGACGCGCACTTCGGACTGCCGCATCTTCCAGAACCAGAAGGTCCCGGACATC
ATCAAGCAGGTGTTCCGCGACCTCGGCTTCTCCGACTTCGAGGACGCCCTGAGCCGCTCCTACCGCGAGTGG
GAATACTGCGTGCAATACCGCGAGACCAGCTTCGATTTCGTCAGCCGGCTGATGGAACAGGAAGGCATCTAC
TACTGGTTCCGCCACGAGAAGAAGCGCCACATCCTGGTGCTCTCCGATGCCTACGGCGCGCACCACAGCCCG
GCCGGCTACACCAGCGTGCCCTACTACCCGCCGAGCCTCGGCCATCGCGAGCGCGACCACTTCTTCGACTGG
CACATGGCGCGTGAGGTCCAGCCCGGCTCGCTGAGCCTCAACGACTACGACTTCCAGCGTCCCGGCACCCGC
CTGGAAGTGCGCTCCAATGTCGGGCGCGCCCATGCCGCGGCCGACTACCCGCTCTACGACTACCCTGGCGAG
TATGTGCAGAGTCAGGACGGCGAACACTATGCACGGACCCGCATCGAGGCGATCCAGACCCAGTACGAGCGA
GTTCGCCTGCGGGGATGCGCCAGGGGTATCGGGGCGGGCCATCTGTTCCACCTGAGCAACTACCCGCGCCTG
GACCAGAACCGCGAATACCTGGTGGTTGGCGCCGAGTACCGGGTAGTCCAGGAACTCTACGAGACCGGTAAT
GGCGGGGGCGGCGCGCAGTTCGAGAGCGAGCTGGACTGTATCGACGCCGGCCAGGCTTTCCGCCCCTTGCCG
TCGACCCCGGTGCCGGTGGTGCGTGGCCCGCAGACCGCGGTGGTGGTCGGGCCCAAGGGCGAGGAGATCTGG
ACCGACCAGTATGGCCGGGTCAAGGTGCATTTCCACTGGGACCGCCACGACCAGTCCAACGAGAACAGCTCC
TGCTGGATGCGCGTCTCGCAGGCCTGGGCCGGGAAGAACTGGGGCTCGATCCAGATCCCGCGGATCGGCCAG
GAAGTGATCGTCAGCTTCCTCGAAGGAGACCCGGACCGGCCGATCATCACCGGGCGGGTCTACAACGCCGAG
CAGACGGTGCCCTaCGAGCTGCCGGCGAACGCTACCCAGAGCGGCACCAAGAGCCGTTCGAGCAAGGGCGGC
ACGCCGGCCAaCTtCAACGAGATCCGCATGGAGGACAAGAAGGGCGCCGAGCAGTTGTTCATCCATGCCGAG
AGGAACCAGGACAttgAGGttgAGAACGACGAGAGCcatcgGGTCGGCCACGACCGGACCAAGACCATTGAC
CACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCAT
GCCAACCGCAGCAAGACGGTCGACCGCAACGAGACGGTCAGGATCGGCATGAACAAGACGGAAACCATCCTC
ATGGCCTCGTTGCAGAACGTCGGCATGGGGCGCATGGAAAACGTCGGGCTCGGCTACAGCCTGAACGTCGGC
ATGATGATGAACACCGTGGTCGGGCTGAACCAGAGCACCCAGGTGATGAAGAAGAAGACCTTGTCGGTGGGC
GATAGCTACGAAGTGAGCGTGGGCGGCAGCGACGATGGCTCTAAGATCACCCTGGACGGTCAGAGCATCACC
CTCGGCAGCCAGCGCATCGAGCTGACCGCCGACCGCGAGATCCTCTTGCGCTGCGGCCAGAGCACGATCCGC
CTGACGCCGGGGGAGATCGAGATCCTCTCGCCCAATGTCGATATCAACTGTTGA
Translation:
MLFSQHTRLVHVDSPLGPEVLQLQRLEGREELGRLFSHELELVSSNPALPLDALLGKPMSLALELPGGSRRH
FHGIVARCSQGAGAGQFASYQVTLRPWLWLLTRTSDCRIFQNQKVPDIIKQVFRDLGFSDFEDALSRSYREW
EYCVQYRETSFDFVSRLMEQEGIYYWFRHEKKRHILVLSDAYGAHHSPAGYTSVPYYPPSLGHRERDHFFDW
HMAREVQPGSLSLNDYDFQRPGTRLEVRSNVGRAHAAADYPLYDYPGEYVQSQDGEHYARTRIEAIQTQYER
VRLRGCARGIGAGHLFHLSNYPRLDQNREYLVVGAEYRVVQELYETGNGGGGAQFESELDCIDAGQAFRPLP
STPVPVVRGPQTAVVVGPKGEEIWTDQYGRVKVHFHWDRHDQSNENSSCWMRVSQAWAGKNWGSIQIPRIGQ
EVIVSFLEGDPDRPIITGRVYNAEQTVPYELPANATQSGTKSRSSKGGTPANFNEIRMEDKKGAEQLFIHAE
RNQDIEVENDESHRVGHDRTKTIDHDETVHVKHDRTETVDNNETITVHANRSKTVDRNETVRIGMNKTETIL
MASLQNVGMGRMENVGLGYSLNVGMMMNTVVGLNQSTQVMKKKTLSVGDSYEVSVGGSDDGSKITLDGQSIT
LGSQRIELTADREILLRCGQSTIRLTPGEIEILSPNVDINC*
AnnotationID:6133GeneID:6132
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2685
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK31601.1| (AY027922) VgrG-like protein [Pseudomonas synxantha]
          Length = 379

 Score =  448 bits (1152), Expect = e-125
 Identities = 214/296 (72%), Positives = 246/296 (83%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:12133




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29383




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36334




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6132_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6132
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7950
                           PA2685_tr
                           translation of PA2685
                           726
                           94.62
                           94.76
                           37
                           3638.0
     

     
     
198512
                           gb|AAG06073.1|AE004696_7
                           (AE004696) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           726
                           94.62
                           94.76
                           37
                           3638.0
     

     
     
7951
                           PA0095_tr
                           translation of PA0095
                           753
                           71.84
                           78.48
                           76
                           2793.0
     

     
     
198513
                           gb|AAG03485.1|AE004448_4
                           (AE004448) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           753
                           71.84
                           78.48
                           76
                           2793.0
     

     
     
198514
                           gb|AAG03481.1|AE004447_14
                           (AE004447) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           696
                           70.11
                           76.29
                           60
                           2530.0
     

     






      

          
GC ORFID: 49134How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2409843Stop: 2407774

          
Length: 2070


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2685 translation of PA2685Homolog Bit Score 1405.0

          
Other Homologs:  t_PA2685 translation of PA2685 (BLASTP 1405), t_PA0095 translation of PA0095 (BLASTP 1073), t_PA0091 translation of PA0091 (BLASTP 979)

          
GC ORF Sequence

           
ATGCTGTTCTCCCAACATACCCGTCTGGTGCACGTGGACTCCCCGCTGGGGCCCGAGGTCCTGCAACTGCAA 
CGGCTGGAAGGCCGCGAGGAGCTGGGCCGGCTGTTCAGCCACGAGCTCGAACTGGTCTCGAGCAATCCCGCC 
TTGCCTCTGGATGCCCTGTTGGGCAAGCCGATGAGCCTCGCGCTGGAACTCCCCGGCGGTAGCCGGCGGCAC 
TTCCACGGCATCGTCGCGCGCTGCAGCCAGGGCGCCGGCGCCGGCCAGTTCGCCAGCTACCAGGTCACCCTG 
CGGCCCTGGCTGTGGCTGCTGACGCGCACTTCGGACTGCCGCATCTTCCAGAACCAGAAGGTCCCGGACATC 
ATCAAGCAGGTGTTCCGCGACCTCGGCTTCTCCGACTTCGAGGACGCCCTGAGCCGCTCCTACCGCGAGTGG 
GAATACTGCGTGCAATACCGCGAGACCAGCTTCGATTTCGTCAGCCGGCTGATGGAACAGGAAGGCATCTAC 
TACTGGTTCCGCCACGAGAAGAAGCGCCACATCCTGGTGCTCTCCGATGCCTACGGCGCGCACCACAGCCCG 
GCCGGCTACACCAGCGTGCCCTACTACCCGCCGAGCCTCGGCCATCGCGAGCGCGACCACTTCTTCGACTGG 
CACATGGCGCGTGAGGTCCAGCCCGGCTCGCTGAGCCTCAACGACTACGACTTCCAGCGTCCCGGCACCCGC 
CTGGAAGTGCGCTCCAATGTCGGGCGCGCCCATGCCGCGGCCGACTACCCGCTCTACGACTACCCTGGCGAG 
TATGTGCAGAGTCAGGACGGCGAACACTATGCACGGACCCGCATCGAGGCGATCCAGACCCAGTACGAGCGA 
GTTCGCCTGCGGGGATGCGCCAGGGGTATCGGGGCGGGCCATCTGTTCCACCTGAGCAACTACCCGCGCCTG 
GACCAGAACCGCGAATACCTGGTGGTTGGCGCCGAGTACCGGGTAGTCCAGGAACTCTACGAGACCGGTAAT 
GGCGGGGGCGGCGCGCAGTTCGAGAGCGAGCTGGACTGTATCGACGCCGGCCAGGCTTTCCGCCCCTTGCCG 
TCGACCCCGGTGCCGGTGGTGCGTGGCCCGCAGACCGCGGTGGTGGTCGGGCCCAAGGGCGAGGAGATCTGG 
ACCGACCAGTATGGCCGGGTCAAGGTGCATTTCCACTGGGACCGCCACGACCAGTCCAACGAGAACAGCTCC 
TGCTGGATGCGCGTCTCGCAGGCCTGGGCCGGGAAGAACTGGGGCTCGATCCAGATCCCGCGGATCGGCCAG 
GAAGTGATCGTCAGCTTCCTCGAAGGAGACCCGGACCGGCCGATCATCACCGGGCGGGTCTACAACGCCGAG 
CAGACGGTGCCCTaCGAGCTGCCGGCGAACGCTACCCAGAGCGGCACCAAGAGCCGTTCGAGCAAGGGCGGC 
ACGCCGGCCAaCTtCAACGAGATCCGCATGGAGGACAAGAAGGGCGCCGAGCAGTTGTTCATCCATGCCGAG 
AGGAACCAGGACAttgAGGttgAGAACGACGAGAGCcatcgGGTCGGCCACGACCGGACCAAGACCATTGAC 
CACGACGAGACGGTGCATGTGAAGCACGATCGCACCGAGACCGTGGACAACAACGAGACCATCACCGTGCAT 
GCCAACCGCAGCAAGACGGTCGACCGCAACGAGACGGTCAGGATCGGCATGAACAAGACGGAAACCATCCTC 
ATGGCCTCGTTGCAGAACGTCGGCATGGGGCGCATGGAAAACGTCGGGCTCGGCTACAGCCTGAACGTCGGC 
ATGATGATGAACACCGTGGTCGGGCTGAACCAGAGCACCCAGGTGATGAAGAAGAAGACCTTGTCGGTGGGC 
GATAGCTACGAAGTGAGCGTGGGCGGCAGCGACGATGGCTCTAAGATCACCCTGGACGGTCAGAGCATCACC 
CTCGGCAGCCAGCGCATCGAGCTGACCGCCGACCGCGAGATCCTCTTGCGCTGCGGCCAGAGCACGATCCGC 
CTGACGCCGGGGGAGATCGAGATCCTCTCGCCCAATGTCGATATCAACTGTTGA