ViewGene

Locus Name:
GeneID:
Location:

GeneID:613
TrivialName: PA14_54450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54450
PAO1 Ortholog Locus:PA0761
Sequence Length:1617
Protein Length:538
Start: 4827062
Stop: 4828678
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04150.1|AE004511_3 (AE004511) L-aspartate oxidase [Pseudomonas aeruginosa PAO1]
Identities = 538/538 (100%), Positives = 538/538 (100%)
Sequence:
ATGAGCCAACATTATCAACACGATGTACTGGTCATCGGCAGCGGCGCCGCCGGCCTGAGTCTGGCCTTGACC
CTTCCGGAACACCTGCGCATCGCCGTCCTCAGCAAGGGCGAACTGTCGCAGGGCTCGACTTACTGGGCCCAG
GGCGGCGTGGCCGCCGTGCTGGACGATACCGACACCGTGGAATCCCACGTCGAGGACACCCTGGTCGCCGGT
GGCGGCCTGTGCCGCGAGGACGCGGTGCGCTTCACCGTGGAGCATAGCCGCGAAGCGATCCAGTGGCTGATC
GAACAGGGGGTGCCCTTCACCCGCGACGAGCAGCACAACCACGAGGAAGGCAGCTTCGAATACCACCTGACC
CGCGAAgGCGGGCACAGCCACCGGCGCATCATCCATGCCGCCGACGCCACCGGCGCCGCGATCTTCAATACC
CTGCTGGCCCAGGCCCGGCGGCGACCGAACATCGAGCTGCTGTCGCAGCGGGTGGCGGTCGACCTGATCACC
GAGCGCAAGCTCGGCCTGCCGAGCAAGCGCTGCCTGGGCGCCTACGTGCTGAATCGGGAAAGCGGCGAAGTC
GATACCTTCCGTGCCCGCTTCAGCGTGCTGGCCTCCGGCGGCGCGAGCAAGGTCTACCTTTATACCAGCAAT
CCCGACGGCAACTCCGGCGACGGTATCGCCATGGCCTGGCGCGCCGGCTGCCGGGTCGGCAACCTGGAGTTC
AACCAGTTCCACCCGACCTGCCTGTACCACCCGCAGGCCAAGAGTTTCCTCATCACCGAGGCATTGCGCGGC
GAAGGCGCCCTGCTCCGCCTGCCCAATGGCGAGCGTTTCATGCCGCGCTTCGACCCGCGTGGCGAACTGGCG
CCCCGGGACATCGTGGCCCGCGCCATCGACCATGAAATGAAGCGCCTGGGGATCGACTGTGTCTACCTGGAC
ATCAGCCACAAGCCGGCCGAGTTCATCAAGGCGCACTTCCCCACCGTCTACGAGCGCTGCCTGGACTTCGGC
ATCGACATTACCCAGCAACCGATCCCGGTAGTGCCGGCCGCTCACTATACCTGCGGCGGCGTGCTCGTCGAC
CAGCACGGGCATACCGACGTGCCGGGCCTCTACGCCATCGGCGAAACCACCTTCACCGGCCTGCACGGCGCC
AACCGCATGGCCAGCAATTCGCTGCTGGAATGCTTCGTCTATGCCCGTTCTGCCGCCGCCGACATGCTCCAG
CGCCTGCCCGGCACGCCCGTGCCGGAAAGCCTGCCGAGCTGGGACGCCAGCCAGGTCACCGACTCCGACGAG
GACGTGATCATCGCGCACAACTGGGACGAACTGCGGCGTTTCATGTGGGACTACGTCGGTATCGTGCGCACC
AACAAGCGCCTGCAGCGCGCCCAGCACCGGGTACGCCTGCTGCTCAGCGAGATCGACGAGTTCTACAGCAAC
TACAAGGTCAGCCGCGACCTGATCGAGTTGCGCAACCTGGCACTGGTCGCCGAACTGATCATCCGCTCGGCC
ATGCAGCGCCGCGAAAGCCGGGGCCTGCACTACACGCTGGATTATCCGGACCTGCTGCCCGAAGCCCGCGAC
ACTATCCTGGTGCCGCCCATCTACGGCGACTGA
Translation:
MSQHYQHDVLVIGSGAAGLSLALTLPEHLRIAVLSKGELSQGSTYWAQGGVAAVLDDTDTVESHVEDTLVAG
GGLCREDAVRFTVEHSREAIQWLIEQGVPFTRDEQHNHEEGSFEYHLTREGGHSHRRIIHAADATGAAIFNT
LLAQARRRPNIELLSQRVAVDLITERKLGLPSKRCLGAYVLNRESGEVDTFRARFSVLASGGASKVYLYTSN
PDGNSGDGIAMAWRAGCRVGNLEFNQFHPTCLYHPQAKSFLITEALRGEGALLRLPNGERFMPRFDPRGELA
PRDIVARAIDHEMKRLGIDCVYLDISHKPAEFIKAHFPTVYERCLDFGIDITQQPIPVVPAAHYTCGGVLVD
QHGHTDVPGLYAIGETTFTGLHGANRMASNSLLECFVYARSAAADMLQRLPGTPVPESLPSWDASQVTDSDE
DVIIAHNWDELRRFMWDYVGIVRTNKRLQRAQHRVRLLLSEIDEFYSNYKVSRDLIELRNLALVAELIIRSA
MQRRESRGLHYTLDYPDLLPEARDTILVPPIYGD*
AnnotationID:622GeneID:613
AnnotatorUID: danlee
Modification Date/Time: 2004-05-17 16:04:34
Gene Name:nadB
Confidence Code:1
GeneProduct:L-aspartate oxidase
Cell Localization:()
Synonyms:PA0761
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0029
Secondary Functional Category(ies):Amino acid biosynthesis
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
      CD-Length = 518 residues,  98.6% aligned
      Score =  709 bits (1832), Expect = 0.0
Genomic Context:
The nadA gene is elsewhere in the genome (in E. coli, nadA and nadB are adjoining genes). 
Comment:
ReferenceID:1229
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18371
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32156
Author/Investigator(s): DeVries CA, Hassett DJ, Flynn JL, Ohman DE.
Title: Genetic linkage in Pseudomonas aeruginosa of algT and nadB: mutation in nadB does not affect NAD biosynthesis or alginate production.
PubMed: 95255669
MedLine:
Source:
Gene. 1995 Apr 14;156(1):63-7.
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:613

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1043 PA0761_tr translation of PA0761 538 99.99 99.99 0 2818.0
40624 gb|AAG04150.1|AE004511_3 (AE004511) L-aspartate oxidase [Pseudomonas aeruginosa PAO1] 538 99.99 99.99 0 2818.0
40625 gb|AAA92356.1| (U17232) L-aspartate oxidase [Pseudomonas aeruginosa] 538 99.99 99.99 0 2818.0
40626 gb|AAO57681.1| (AE016871) L-aspartate oxidase [Pseudomonas syringae pv. tomato str. DC3000] 538 85.87 92.19 0 2453.0
40627 gb|AAN67048.1|AE016333_9 (AE016779) L-aspartate oxidase [Pseudomonas putida KT2440] 538 85.13 92.19 4 2429.0
GC ORFID: 43615How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0761Glimmer Score:
Start: 126845Stop: 125229
Length: 1617
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0761 translation of PA0761Homolog Bit Score 1090.0
Other Homologs: psyr_15may02_Scaffold16_revised_gene2595 (ORF: BLASTX 944.0), t_PA0761 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCAACATTATCAACACGATGTACTGGTCATCGGCAGCGGCGCCGCCGGCCTGAGTCTGGCCTTGACC
CTTCCGGAACACCTGCGCATCGCCGTCCTCAGCAAGGGCGAACTGTCGCAGGGCTCGACTTACTGGGCCCAG
GGCGGCGTGGCCGCCGTGCTGGACGATACCGACACCGTGGAATCCCACGTCGAGGACACCCTGGTCGCCGGT
GGCGGCCTGTGCCGCGAGGACGCGGTGCGCTTCACCGTGGAGCATAGCCGCGAAGCGATCCAGTGGCTGATC
GAACAGGGGGTGCCCTTCACCCGCGACGAGCAGCACAACCACGAGGAAGGCAGCTTCGAATACCACCTGACC
CGCGAAgGCGGGCACAGCCACCGGCGCATCATCCATGCCGCCGACGCCACCGGCGCCGCGATCTTCAATACC
CTGCTGGCCCAGGCCCGGCGGCGACCGAACATCGAGCTGCTGTCGCAGCGGGTGGCGGTCGACCTGATCACC
GAGCGCAAGCTCGGCCTGCCGAGCAAGCGCTGCCTGGGCGCCTACGTGCTGAATCGGGAAAGCGGCGAAGTC
GATACCTTCCGTGCCCGCTTCAGCGTGCTGGCCTCCGGCGGCGCGAGCAAGGTCTACCTTTATACCAGCAAT
CCCGACGGCAACTCCGGCGACGGTATCGCCATGGCCTGGCGCGCCGGCTGCCGGGTCGGCAACCTGGAGTTC
AACCAGTTCCACCCGACCTGCCTGTACCACCCGCAGGCCAAGAGTTTCCTCATCACCGAGGCATTGCGCGGC
GAAGGCGCCCTGCTCCGCCTGCCCAATGGCGAGCGTTTCATGCCGCGCTTCGACCCGCGTGGCGAACTGGCG
CCCCGGGACATCGTGGCCCGCGCCATCGACCATGAAATGAAGCGCCTGGGGATCGACTGTGTCTACCTGGAC
ATCAGCCACAAGCCGGCCGAGTTCATCAAGGCGCACTTCCCCACCGTCTACGAGCGCTGCCTGGACTTCGGC
ATCGACATTACCCAGCAACCGATCCCGGTAGTGCCGGCCGCTCACTATACCTGCGGCGGCGTGCTCGTCGAC
CAGCACGGGCATACCGACGTGCCGGGCCTCTACGCCATCGGCGAAACCACCTTCACCGGCCTGCACGGCGCC
AACCGCATGGCCAGCAATTCGCTGCTGGAATGCTTCGTCTATGCCCGTTCTGCCGCCGCCGACATGCTCCAG
CGCCTGCCCGGCACGCCCGTGCCGGAAAGCCTGCCGAGCTGGGACGCCAGCCAGGTCACCGACTCCGACGAG
GACGTGATCATCGCGCACAACTGGGACGAACTGCGGCGTTTCATGTGGGACTACGTCGGTATCGTGCGCACC
AACAAGCGCCTGCAGCGCGCCCAGCACCGGGTACGCCTGCTGCTCAGCGAGATCGACGAGTTCTACAGCAAC
TACAAGGTCAGCCGCGACCTGATCGAGTTGCGCAACCTGGCACTGGTCGCCGAACTGATCATCCGCTCGGCC
ATGCAGCGCCGCGAAAGCCGGGGCCTGCACTACACGCTGGATTATCCGGACCTGCTGCCCGAAGCCCGCGAC
ACTATCCTGGTGCCGCCCATCTACGGCGACTGA