ViewGene
Locus Name:
GeneID:
Location:

GeneID:6104
TrivialName: PA14_30850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30850
PAO1 Ortholog Locus:
Sequence Length:1272
Protein Length:423
Start: 2679706
Stop: 2678435
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA71794.1| (Y10832) trbI [Ralstonia eutropha]
Identities = 371/427 (86%), Positives = 392/427 (91%), Gaps = 5/427 (1%)
Sequence:
ATGAGCCAGGACGACACCCCCGACCGTGCCGCGCCGCAGGTGGGCAAGGTCGCGCCCGAGGCGGTGGCGCTG
CGCGCGCAGCCGCGCCCGGTCACGCGCCTTAACCGGCGCACGCTGGCGATGTTCATGGGCGGCCTGTCGGTC
GCCGTGCTGGGTGCGACCATCTGGTCATTGCAGCCGCACCGGCGCGGCGCGGGCGAGCAGACCGAGCTTTAC
AACGTCGATCGCGTGTCCAAGTCCGAAGGGCTGGACGGCCTGCCGGCCGACTACTCGAAGCTGCCGCAGAAG
GTGCCCGAGCTGGGGCCGCCGCTGCCGGGCGACCTTGGCCCCGCCATCGTGGCCTCGCAGCAGCCGGTCACG
CCGACCTATGTGCCGCCCGGCCACGACCCCGAGGACGCCTTGCGCAAGGAGGCTGACGCCGCTGCGGCCTCA
TCGGTGTTCTTCCGCTCGGGCCAGCAGGGCAATGCCGCAGCGCCAGCCACGGCCCAAGCCGCTGCGGCTGCG
ACTGGCAACGCCTTGGCAGGCTTCGACCCGCTGGCGGCTGGGCCTGCCTCGATGGCGGCCCAGCCTGCCGAC
CCGACTGCCACGCAGAACCGGCAAGACCAGAAGGAGGCATTCCTGAAAGGCGGTTCTACGGAAACCCGCAAT
TCCGGCAACCTGCAAATGCCGGCCTCGCCGTATCAAGTCATGGCCGGGACAGTGATCGCGGCTGCGTTGGTG
ACGGGCATCAAGTCCGACTTGCCGGGCGACGTGATCGGCACGGTGACAGAGCCGGTCTATGACTCGGCCACG
GGCAAGTTCCTGCTGATCCCGCAGGGATCGCGCATCCTCGGCAAATACAACAGCCAGGTCAGTTACGGGCAG
AGTCGCGTGCAGGTGGTGTGGAACCGGATCATCCTGCCAGACACGTCTTCGCTGACCATCGACAACCTGGTG
GGTACCGACCCGGCCGGCTACTCCGGCCTCGAAGATGGCGTGGACTACCACTGGGGCCGCATCGTCGCCGGT
GCGGCACTGACGACGCTGCTGGGCGTAGGTGCCGAGTTGGCCGCGCCCGAGAACCGCCAAGACGGCAACCGC
ATCGTGATCGCGGGGCGCGACAGCGCCCAAGACAGCATCAATCAGGTTGGACAGGAGATGACCCGGCGCAAC
ATGAACATCCAGCCGACGTTGACCGAACGGCCGGGCCTGCCGGTGCGGATCATCGTCAACCGCGACTTGGTG
CTGCGACCGTACCAGCCGATGTTCTTCAACCGGGGAGCGATGCGATGA
Translation:
MSQDDTPDRAAPQVGKVAPEAVALRAQPRPVTRLNRRTLAMFMGGLSVAVLGATIWSLQPHRRGAGEQTELY
NVDRVSKSEGLDGLPADYSKLPQKVPELGPPLPGDLGPAIVASQQPVTPTYVPPGHDPEDALRKEADAAAAS
SVFFRSGQQGNAAAPATAQAAAAATGNALAGFDPLAAGPASMAAQPADPTATQNRQDQKEAFLKGGSTETRN
SGNLQMPASPYQVMAGTVIAAALVTGIKSDLPGDVIGTVTEPVYDSATGKFLLIPQGSRILGKYNSQVSYGQ
SRVQVVWNRIILPDTSSLTIDNLVGTDPAGYSGLEDGVDYHWGRIVAGAALTTLLGVGAELAAPENRQDGNR
IVIAGRDSAQDSINQVGQEMTRRNMNIQPTLTERPGLPVRIIVNRDLVLRPYQPMFFNRGAMR*
AnnotationID:6105GeneID:6104
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 11:11:13
Gene Name:
Confidence Code:3
GeneProduct:TrbI-like protein
Cell Localization:()
Synonyms:trbI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|27817732|emb|CAD61159.1|  putative mating pair formation transmembrane protein [Cupriavidus oxalaticus]
gi|4186115|emb|CAA71794.1|  trbI [Ralstonia eutropha]
     Length=426
     Score =  729 bits (1883),  Expect = 0.0
     Identities = 371/427 (86%), Positives = 392/427 (91%), Gaps = 5/427 (1%)

gi|68527818|gb|EAN50784.1|  conjugation TrbI-like protein [Ralstonia metallidurans CH34]
     Length=422
     Score =  717 bits (1852),  Expect = 0.0
     Identities = 368/425 (86%), Positives = 380/425 (89%), Gaps = 5/425 (1%)








 
Structural Features:
pfam03743, TrbI, Bacterial conjugation TrbI-like protein. Although not essential for
conjugation, the TrbI protein greatly increase the conjugational efficiency..
             CD-Length = 184 residues, 100.0% aligned
             Score =  217 bits (554), Expect = 2e-57






   
Genomic Context:






   
Comment:


















    ReferenceID:12084




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29327




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6104
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198501
                           emb|CAA71794.1|
                           (Y10832) trbI [Ralstonia eutropha]
                           427
                           86.88
                           91.80
                           5
                           1888.0
     

     
     
198502
                           emb|CAD61159.1|
                           (AJ536756) putative mating pair formation transmembrane protein [Ralstonia oxalatica]
                           427
                           86.88
                           91.80
                           5
                           1888.0
     

     
     
198503
                           emb|CAD16282.1|
                           (AL646070) PROBABLE CONJUGAL TRANSFER TRBI TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           427
                           85.24
                           88.29
                           6
                           1825.0
     

     
     
198505
                           emb|CAE29556.1|
                           (BX572606) putative conjugal transfer protein trbI [Rhodopseudomonas palustris CGA009]
                           428
                           44.39
                           59.34
                           22
                           830.0
     

     
     
198504
                           dbj|BAC46885.1|
                           (AP005940) conjugal transfer protein [Bradyrhizobium japonicum USDA 110]
                           431
                           44.31
                           61.25
                           39
                           851.0
     

     






      

          
GC ORFID: 49106How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2274220Stop: 2275491

          
Length: 1272


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAGCCAGGACGACACCCCCGACCGTGCCGCGCCGCAGGTGGGCAAGGTCGCGCCCGAGGCGGTGGCGCTG 
CGCGCGCAGCCGCGCCCGGTCACGCGCCTTAACCGGCGCACGCTGGCGATGTTCATGGGCGGCCTGTCGGTC 
GCCGTGCTGGGTGCGACCATCTGGTCATTGCAGCCGCACCGGCGCGGCGCGGGCGAGCAGACCGAGCTTTAC 
AACGTCGATCGCGTGTCCAAGTCCGAAGGGCTGGACGGCCTGCCGGCCGACTACTCGAAGCTGCCGCAGAAG 
GTGCCCGAGCTGGGGCCGCCGCTGCCGGGCGACCTTGGCCCCGCCATCGTGGCCTCGCAGCAGCCGGTCACG 
CCGACCTATGTGCCGCCCGGCCACGACCCCGAGGACGCCTTGCGCAAGGAGGCTGACGCCGCTGCGGCCTCA 
TCGGTGTTCTTCCGCTCGGGCCAGCAGGGCAATGCCGCAGCGCCAGCCACGGCCCAAGCCGCTGCGGCTGCG 
ACTGGCAACGCCTTGGCAGGCTTCGACCCGCTGGCGGCTGGGCCTGCCTCGATGGCGGCCCAGCCTGCCGAC 
CCGACTGCCACGCAGAACCGGCAAGACCAGAAGGAGGCATTCCTGAAAGGCGGTTCTACGGAAACCCGCAAT 
TCCGGCAACCTGCAAATGCCGGCCTCGCCGTATCAAGTCATGGCCGGGACAGTGATCGCGGCTGCGTTGGTG 
ACGGGCATCAAGTCCGACTTGCCGGGCGACGTGATCGGCACGGTGACAGAGCCGGTCTATGACTCGGCCACG 
GGCAAGTTCCTGCTGATCCCGCAGGGATCGCGCATCCTCGGCAAATACAACAGCCAGGTCAGTTACGGGCAG 
AGTCGCGTGCAGGTGGTGTGGAACCGGATCATCCTGCCAGACACGTCTTCGCTGACCATCGACAACCTGGTG 
GGTACCGACCCGGCCGGCTACTCCGGCCTCGAAGATGGCGTGGACTACCACTGGGGCCGCATCGTCGCCGGT 
GCGGCACTGACGACGCTGCTGGGCGTAGGTGCCGAGTTGGCCGCGCCCGAGAACCGCCAAGACGGCAACCGC 
ATCGTGATCGCGGGGCGCGACAGCGCCCAAGACAGCATCAATCAGGTTGGACAGGAGATGACCCGGCGCAAC 
ATGAACATCCAGCCGACGTTGACCGAACGGCCGGGCCTGCCGGTGCGGATCATCGTCAACCGCGACTTGGTG 
CTGCGACCGTACCAGCCGATGTTCTTCAACCGGGGAGCGATGCGATGA