ViewGene
Locus Name:
GeneID:
Location:

GeneID:6103
TrivialName: PA14_30860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30860
PAO1 Ortholog Locus:
Sequence Length:990
Protein Length:329
Start: 2680698
Stop: 2679709
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD61158.1| (AJ536756) putative mating pair formation protein [Ralstonia oxalatica]
Identities = 301/329 (91%), Positives = 311/329 (94%), Gaps = 3/329 (0%)
Sequence:
ATGAATGATGTTTTCCGCAAATCCGCCTTGCCGCTGATCCTGCTGGCCCTCGCGGGCTGCGCCACGCAGGGC
AAGCCGCCGCCGACCATCTCGCTCGATGAGCCGGTGCAGGCGCAGCCGCTGCCGGAGCCGCCCGCGCCGGTG
GAGGTGGTCAAGGTGCCCGAGCCGCTGGCGCTGCCGGCGCAGTTGAAGCCATTGCCCGAAGCCGAGGCTGCC
AAGCCCGTCCCTGAACCTGCCGACGAAACCGTGCGCGTCTCGCGTGCCAACGCCGAGGCCCGCATCGCGCCC
ACGCGCGAGGGCTACGTCAATGCGATTCAGGTGTGGCCCTACACCGATGGCGCGCTGTATCAGGTCTATGCG
GCCGTGGGCCGCGTGACCGTGATCACGCTCCAGCCGGGCGAGGAACTGGTGACGGTCGCCGCTGGCGACACT
GTGCGCTGGATCGTGGGCGACACATCCAGCGGCAGCGGTGATGCGCTGCGCGTGAACGTGATGGTGAAGCCC
ATCCGCTCGGGCCTCAAGACGAATCTGGTCATCACCACCAGCCGGCGCACCTACCTGCTGGAGCTGACCTCG
ACAGAGAAGACGTGGATGGCGTCAGTGTCGTGGGAGTACCCGAAGGACAAGATGCTGGCCTTGCAGCGCCAG
GCGCAGGCGGCCAGCGCCGCCGCGCCAGTCGATACCGGCTTGTCGCTGGAGAAGATCCGCTTCCGCTACGCG
ATCAGCGGCAGCAATCCGCCGTGGAAGCCGCTGCGCGCCTTCGATGACGGCGAGAAGGTCTATATCCAGTTC
CCGCCGGGCATCGCGCAAGGCGAGCTGCCGCCGCTGTTCGTCATCGGCGCGCAGGGCGACGGGCAACTGGTG
AACTACCGCTTCCGTGCGCCGTACTACATCGTGGATCGCCTCTTTGGGGCGGCGGAGCTGCGCTTGGGCGGC
GACAAGGGCGACGTGGTGCGGATCGAGCGCACGGACGGCGCGCGGAGGAACTGA
Translation:
MNDVFRKSALPLILLALAGCATQGKPPPTISLDEPVQAQPLPEPPAPVEVVKVPEPLALPAQLKPLPEAEAA
KPVPEPADETVRVSRANAEARIAPTREGYVNAIQVWPYTDGALYQVYAAVGRVTVITLQPGEELVTVAAGDT
VRWIVGDTSSGSGDALRVNVMVKPIRSGLKTNLVITTSRRTYLLELTSTEKTWMASVSWEYPKDKMLALQRQ
AQAASAAAPVDTGLSLEKIRFRYAISGSNPPWKPLRAFDDGEKVYIQFPPGIAQGELPPLFVIGAQGDGQLV
NYRFRAPYYIVDRLFGAAELRLGGDKGDVVRIERTDGARRN*
AnnotationID:6104GeneID:6103
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 11:11:49
Gene Name:
Confidence Code:3
GeneProduct:TrbG-like protein
Cell Localization:()
Synonyms:trbG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3504, pfam03524
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|27817731|emb|CAD61158.1|  putative mating pair formation protein [Cupriavidus oxalaticus]
     Length=326
     Score =  489 bits (1258),  Expect = 7e-137
     Identities = 295/329 (89%), Positives = 307/329 (93%), Gaps = 3/329 (0%)

gi|68526028|gb|EAN49002.1|  Conjugal transfer protein TrbG/VirB9/CagX [Ralstonia metallidurans 
            CH34]
     Length=330
     Score =  468 bits (1205),  Expect = 1e-130
     Identities = 296/330 (89%), Positives = 314/330 (95%), Gaps = 1/330 (0%)

gi|17547295|ref|NP_520697.1|  PROBABLE CONJUGAL TRANSFER LIPOPROTEIN TRBG [Ralstonia 
solanacearum GMI1000]
     Length=334
     Score =  468 bits (1205),  Expect = 1e-130
     Identities = 299/334 (89%), Positives = 312/334 (93%), Gaps = 5/334 (1%)

gi|67088807|gb|EAM08273.1|  Conjugal transfer protein TrbG/VirB9/CagX [Azotobacter vinelandii AvOP]
     Length=333
     Score =  467 bits (1201),  Expect = 3e-130
     Identities = 296/325 (91%), Positives = 308/325 (94%), Gaps = 0/325 (0%






 
Structural Features:
COG3504, VirB9, Type IV secretory pathway, VirB9 components [Intracellular trafficking and secretion].
             CD-Length = 265 residues,  90.6% aligned
             Score =  209 bits (532), Expect = 4e-55

pfam03524, CagX, Conjugal transfer protein. This family includes type IV secretion system
CagX conjugation protein. Other members of this family are involved in conjugal transfer 
to plant cells of T-DNA.
             CD-Length = 214 residues, 100.0% aligned
             Score =  200 bits (509), Expect = 3e-52






   
Genomic Context:






   
Comment:


















    ReferenceID:12082




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29325




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6103
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198487
                           emb|CAD61158.1|
                           (AJ536756) putative mating pair formation protein [Ralstonia oxalatica]
                           329
                           91.48
                           94.52
                           3
                           1550.0
     

     
     
198488
                           emb|CAD16283.1|
                           (AL646070) PROBABLE CONJUGAL TRANSFER LIPOPROTEIN TRBG [Ralstonia solanacearum]
                           334
                           89.52
                           93.41
                           5
                           1525.0
     

     
     
198489
                           emb|CAE29557.1|
                           (BX572606) conjugal transfer protein trbG [Rhodopseudomonas palustris CGA009]
                           354
                           57.34
                           71.18
                           33
                           1016.0
     

     
     
198492
                           emb|CAE27666.1|
                           (BX572600) probable conjugal transfer protein trbG [Rhodopseudomonas palustris CGA009]
                           343
                           55.10
                           69.09
                           24
                           915.0
     

     
     
198491
                           dbj|BAB52708.1|
                           (AP003009) conjugal transfer protein; TrbG [Mesorhizobium loti]
                           349
                           54.44
                           66.47
                           37
                           916.0
     

     






      

          
GC ORFID: 49105How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2273228Stop: 2274217

          
Length: 990


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAATGATGTTTTCCGCAAATCCGCCTTGCCGCTGATCCTGCTGGCCCTCGCGGGCTGCGCCACGCAGGGC 
AAGCCGCCGCCGACCATCTCGCTCGATGAGCCGGTGCAGGCGCAGCCGCTGCCGGAGCCGCCCGCGCCGGTG 
GAGGTGGTCAAGGTGCCCGAGCCGCTGGCGCTGCCGGCGCAGTTGAAGCCATTGCCCGAAGCCGAGGCTGCC 
AAGCCCGTCCCTGAACCTGCCGACGAAACCGTGCGCGTCTCGCGTGCCAACGCCGAGGCCCGCATCGCGCCC 
ACGCGCGAGGGCTACGTCAATGCGATTCAGGTGTGGCCCTACACCGATGGCGCGCTGTATCAGGTCTATGCG 
GCCGTGGGCCGCGTGACCGTGATCACGCTCCAGCCGGGCGAGGAACTGGTGACGGTCGCCGCTGGCGACACT 
GTGCGCTGGATCGTGGGCGACACATCCAGCGGCAGCGGTGATGCGCTGCGCGTGAACGTGATGGTGAAGCCC 
ATCCGCTCGGGCCTCAAGACGAATCTGGTCATCACCACCAGCCGGCGCACCTACCTGCTGGAGCTGACCTCG 
ACAGAGAAGACGTGGATGGCGTCAGTGTCGTGGGAGTACCCGAAGGACAAGATGCTGGCCTTGCAGCGCCAG 
GCGCAGGCGGCCAGCGCCGCCGCGCCAGTCGATACCGGCTTGTCGCTGGAGAAGATCCGCTTCCGCTACGCG 
ATCAGCGGCAGCAATCCGCCGTGGAAGCCGCTGCGCGCCTTCGATGACGGCGAGAAGGTCTATATCCAGTTC 
CCGCCGGGCATCGCGCAAGGCGAGCTGCCGCCGCTGTTCGTCATCGGCGCGCAGGGCGACGGGCAACTGGTG 
AACTACCGCTTCCGTGCGCCGTACTACATCGTGGATCGCCTCTTTGGGGCGGCGGAGCTGCGCTTGGGCGGC 
GACAAGGGCGACGTGGTGCGGATCGAGCGCACGGACGGCGCGCGGAGGAACTGA