ViewGene
Locus Name:
GeneID:
Location:

GeneID:6101
TrivialName: PA14_30880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30880
PAO1 Ortholog Locus:
Sequence Length:1371
Protein Length:456
Start: 2682782
Stop: 2681412
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD16285.1| (AL646070) PUTATIVE CONJUGAL TRANSFER TRBL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
Identities = 386/457 (84%), Positives = 417/457 (91%), Gaps = 2/457 (0%)
Sequence:
ATGAATGACGTGACGATCATCGACCAGTTCCTCAACACCTTCGCCACCTACATCGACTCGGGTTTCGGGCTG
CTGCGCGGCGAAGTGGCGTTCCTCACGGCCACGCTGATCGTCATCGACATGACGATCGCCGGGTTGTATTGG
GCCATGAGCCATGCCACCGGCCAGGGCGAGGACGTGATCGCCAAGCTGCTGCGCAAGGTGCTGTACGTCGGT
GCCTTCGCCTACATCATCAACAACTTCAACTGGCTGGCCAGCATCGTGTTCCGCTCGTTCGCGGGACTGGGT
ATCACCGCCACCGGCTCGACTATCACGATGGAAGACTTCTTGCAGCCGGGCCGGCTGGCGAAGGCCGGCCTT
GATGCGGGCGGGCCGATCTTCCTGCAACTCGATGACCTGATGGGATTTCCCGAGGTGTTCTTGAACCTCGAT
GCCATCTTGGTGCTGTTCCTCGCATGGCTAGTCGTGGTGCTGTGCTTCTTCGTGCTGGCGATCCAGCTTTTC
ATCACGCTGATCGAGTTCAAGTTGACGACGCTGGCTGGCTTCGTGCTGGTGCCGTTCGCGCTGTGGAACAAG
ACCTCGTTCCTGGCCGAAAAGGTGCTGGGCAACGTGGTATCCGCTGGCGTCAAGGTGCTGGTTCTGGCTGTG
ATCGTCGGTATCGGCTCGGGCCTTTTCGCGCAGTTCCAAGTCCATCCTGACGAGCCTTCTATCGACCACGCG
CTGGTCATCATGCTGGCCTCGCTCACCTTGCTGGCGCTCGGGATCTTCGGCCCCGGCATCGCCACGGGCCTC
GTGTCCGGTGCGCCCCAGCTCGGCGCGGGCGCGATGGCCGGTGCCGCTATCGGCGCAGCCGGAACGGCAGTG
GCTGTCGGTGCTGCCGCGACGGGCGTGGGCGGTGCGGTGGCCGCTGGTGCCCGCATGGCCCCGGCCGCCGCC
AAGCTGGCCGGCAGCGGCGCGCGTGCCGCCACGTCGGCGGCTGGCAGCGCGAAGTCGGCGTTCCAGGCCGGT
TCCGCAGCAGCAGGCGGCGGTGCCAAAGGCGCGATGGCGGGCTTGGGCAACGTCGCCAAGACCGGCGCGCAG
TCCGCCGGACGCGCTGCCGCATCCCGCGCTTCCGCTGCTGGGCAGCGCATGGCCGCGCCGTTCCGCGCTGGC
TGGAAAGGCGACGCTGGCGCGTCAGCCGGCCAAGCCGCCACCAGCGAAGCCCCCGCAGGCGCTGCCGCTGCA
CAGACGCCCGAGCAACCCGCCTGGGCCAAGCGGCTGCAACGCCGCCAGCAACTCACTCATGCCGCGACCACC
ACCGCCCACACGCTGCGCGGTGGCGATGGCGGCGGCTCCGGCCAAGGGCCGAGCCTGCGCGATTCCGACTCA
TAA
Translation:
MNDVTIIDQFLNTFATYIDSGFGLLRGEVAFLTATLIVIDMTIAGLYWAMSHATGQGEDVIAKLLRKVLYVG
AFAYIINNFNWLASIVFRSFAGLGITATGSTITMEDFLQPGRLAKAGLDAGGPIFLQLDDLMGFPEVFLNLD
AILVLFLAWLVVVLCFFVLAIQLFITLIEFKLTTLAGFVLVPFALWNKTSFLAEKVLGNVVSAGVKVLVLAV
IVGIGSGLFAQFQVHPDEPSIDHALVIMLASLTLLALGIFGPGIATGLVSGAPQLGAGAMAGAAIGAAGTAV
AVGAAATGVGGAVAAGARMAPAAAKLAGSGARAATSAAGSAKSAFQAGSAAAGGGAKGAMAGLGNVAKTGAQ
SAGRAAASRASAAGQRMAAPFRAGWKGDAGASAGQAATSEAPAGAAAAQTPEQPAWAKRLQRRQQLTHAATT
TAHTLRGGDGGGSGQGPSLRDSDS*
AnnotationID:6102GeneID:6101
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 12:12:26
Gene Name:
Confidence Code:3
GeneProduct:TrbG-like protein
Cell Localization:()
Synonyms:trbL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3846, pfam04610
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68526026|gb|EAN49000.1|  TrbL/VirB6 plasmid conjugal transfer protein [Ralstonia metallidurans CH34]
     Length=459
     Score =  812 bits (2098),  Expect = 0.0
     Identities = 421/458 (91%), Positives = 437/458 (95%), Gaps = 3/458 (0%)

gi|67088809|gb|EAM08275.1|  TrbL/VirB6 plasmid conjugal transfer protein [Azotobacter vinelandii 
            AvOP]
     Length=457
     Score =  751 bits (1940),  Expect = 0.0
     Identities = 389/457 (85%), Positives = 416/457 (91%), Gaps = 2/457 (0%)

gi|17547297|ref|NP_520699.1|  PUTATIVE CONJUGAL TRANSFER TRBL TRANSMEMBRANE PROTEIN [Ralstonia 
            solanacearum GMI1000]
     Length=457
     Score =  751 bits (1939),  Expect = 0.0
     Identities = 386/457 (84%), Positives = 417/457 (91%), Gaps = 2/457 (0%)








 
Structural Features:
COG3846, TrbL, Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion].
             CD-Length = 452 residues, only  56.6% aligned
             Score =  207 bits (527), Expect = 3e-54

pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein..
             CD-Length = 244 residues,  94.3% aligned
             Score = 59.5 bits (144), Expect = 8e-10








   
Genomic Context:






   
Comment:


















    ReferenceID:12078




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29321




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6101
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198468
                           emb|CAD16285.1|
                           (AL646070) PUTATIVE CONJUGAL TRANSFER TRBL TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           458
                           84.27
                           91.04
                           3
                           1943.0
     

     
     
198469
                           emb|CAD61156.1|
                           (AJ536756) putative mating pair formation transmembrane protein [Ralstonia oxalatica]
                           457
                           81.40
                           89.05
                           9
                           1849.0
     

     
     
198471
                           emb|CAE27668.1|
                           (BX572600) putative CONJUGAL TRANSFER protein trbL [Rhodopseudomonas palustris CGA009]
                           457
                           52.29
                           66.73
                           26
                           1112.0
     

     
     
198470
                           dbj|BAC53547.1|
                           (AP005965) trbL [Bradyrhizobium japonicum USDA 110]
                           474
                           51.89
                           66.66
                           39
                           1149.0
     

     
     
198473
                           emb|CAE29559.1|
                           (BX572606) conjugal transfer protein trbL [Rhodopseudomonas palustris CGA009]
                           461
                           50.10
                           65.50
                           35
                           1080.0
     

     






      

          
GC ORFID: 49103How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2271144Stop: 2272514

          
Length: 1371


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAATGACGTGACGATCATCGACCAGTTCCTCAACACCTTCGCCACCTACATCGACTCGGGTTTCGGGCTG 
CTGCGCGGCGAAGTGGCGTTCCTCACGGCCACGCTGATCGTCATCGACATGACGATCGCCGGGTTGTATTGG 
GCCATGAGCCATGCCACCGGCCAGGGCGAGGACGTGATCGCCAAGCTGCTGCGCAAGGTGCTGTACGTCGGT 
GCCTTCGCCTACATCATCAACAACTTCAACTGGCTGGCCAGCATCGTGTTCCGCTCGTTCGCGGGACTGGGT 
ATCACCGCCACCGGCTCGACTATCACGATGGAAGACTTCTTGCAGCCGGGCCGGCTGGCGAAGGCCGGCCTT 
GATGCGGGCGGGCCGATCTTCCTGCAACTCGATGACCTGATGGGATTTCCCGAGGTGTTCTTGAACCTCGAT 
GCCATCTTGGTGCTGTTCCTCGCATGGCTAGTCGTGGTGCTGTGCTTCTTCGTGCTGGCGATCCAGCTTTTC 
ATCACGCTGATCGAGTTCAAGTTGACGACGCTGGCTGGCTTCGTGCTGGTGCCGTTCGCGCTGTGGAACAAG 
ACCTCGTTCCTGGCCGAAAAGGTGCTGGGCAACGTGGTATCCGCTGGCGTCAAGGTGCTGGTTCTGGCTGTG 
ATCGTCGGTATCGGCTCGGGCCTTTTCGCGCAGTTCCAAGTCCATCCTGACGAGCCTTCTATCGACCACGCG 
CTGGTCATCATGCTGGCCTCGCTCACCTTGCTGGCGCTCGGGATCTTCGGCCCCGGCATCGCCACGGGCCTC 
GTGTCCGGTGCGCCCCAGCTCGGCGCGGGCGCGATGGCCGGTGCCGCTATCGGCGCAGCCGGAACGGCAGTG 
GCTGTCGGTGCTGCCGCGACGGGCGTGGGCGGTGCGGTGGCCGCTGGTGCCCGCATGGCCCCGGCCGCCGCC 
AAGCTGGCCGGCAGCGGCGCGCGTGCCGCCACGTCGGCGGCTGGCAGCGCGAAGTCGGCGTTCCAGGCCGGT 
TCCGCAGCAGCAGGCGGCGGTGCCAAAGGCGCGATGGCGGGCTTGGGCAACGTCGCCAAGACCGGCGCGCAG 
TCCGCCGGACGCGCTGCCGCATCCCGCGCTTCCGCTGCTGGGCAGCGCATGGCCGCGCCGTTCCGCGCTGGC 
TGGAAAGGCGACGCTGGCGCGTCAGCCGGCCAAGCCGCCACCAGCGAAGCCCCCGCAGGCGCTGCCGCTGCA 
CAGACGCCCGAGCAACCCGCCTGGGCCAAGCGGCTGCAACGCCGCCAGCAACTCACTCATGCCGCGACCACC 
ACCGCCCACACGCTGCGCGGTGGCGATGGCGGCGGCTCCGGCCAAGGGCCGAGCCTGCGCGATTCCGACTCA 
TAA