ViewGene

Locus Name:
GeneID:
Location:

GeneID:610
TrivialName: PA14_09300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09300
PAO1 Ortholog Locus:PA4223
Sequence Length:1713
Protein Length:570
Start: 796493
Stop: 798205
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07611.1|AE004839_4 (AE004839) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 562/570 (98%), Positives = 564/570 (98%)
Sequence:
GTGACCCCGGTGCTGTGGCGCCTGCTGCGCACCTATCGCTGGCGGCTGGCGGCGGCCATGGGGTTGCAGGCC
CTGGCCGGGCTCTGCTCGCTGTTGCCCTGGATGCTTCTCGCCTGGCTCGCCGAGCCGCTGGCGCGCGGCCAG
GCGCAGCCGGCCCTGCTGGCCCTGGTGCTGCTGGCGGTGCTGGCTTGGTTGGGCTGCCAGGCGCTGGCCGCG
CACCTGGCCCACCGGGTCGACGCGGACCTCTGCAACGACCTGCGCCTGCGCCTGCTGGCGCACCTGCAACGG
CTACCGCTGGACTGGTTCGGTCGCCAGGGTCCGGACGGCGTGGCGCGCCTCGTGGAGCAGGACGTGCGGGCC
CTGCACCAACTGATCGCGCACGCTCCCAACGATCTCAGCAACCTGTTGGTGGTGCCGCTCGTCGCGTTGCTC
TGGCTGGCCTGGCTGCACCCCTGGCTGCTGCTGTTCTGCCTGCTGCCGCTGGTGCTGGCCGCCGCCGGCTTC
CTGCTGCTGCGCTCGGCGTGCTACCGCGACCAGGTGCTGCGGCGCAACGCTGCGCTGGAAAGGCTCTCGGCG
GACTATGGCGAATTCGCCCACAACCTGCTGCTGGCCCGACAGTACCCCGGCGCCGGCATACAACAGGGCGCC
GAGGCGTCGGCGGCGGCCTTCGGCGAAGCGTTCGGCGCCTGGGTGAAGCGGGTCGGCCACCTCGCCGCGCTG
GTCTACGTGCAGTTGTCGACGCCCTGGCTGCTGGCCTGGGTCCTGCTCGGCACGCTGGCTCTGGATGCCCTC
GGCGTGCCGCTGGCGCTCGGCCAGGCCTGCGCCTTCCTGCTCCTGCTGCGGGCCCTGGCCGCCCCGGTGCAG
GCGCTCGGCCACGGCGGCGACGCGCTGCTGGGCGCGCGCGCCGCCGCCGAGCGCCTGCAGCAGGTGTTCGAC
CAGGCGCCGCTGGCCGAGGGCCGCTCGACCCGCGAGCTGGTCGATGGCGCGGTGGCGCTGCGCGGCCTGGGC
CATGCCTACGAGGGCGTGGAGGTCCTGGCCGATATCGACCTGGAGCTGAAGGATGGCAGCCTGGTGGCCCTG
GTCGGTCCCTCGGGCTCCGGCAAGAGCACCCTGCTGCACCTGCTGGCGCGCTACATGGACGCGCAGCGCGGC
GAACTGGAGATTGGCGGCCTGGCACTGAAGGACATGCCCGATGCCGTGCGCCATCGGCATATCGCGCTGGTC
GGCCAGCAGGCGGCGGCGCTGGAGATATCCCTGGCCGACAACATCGCCCTGTTCCGCCCCGATGCCGATCTC
CAGGAGATTCGCCAGGCGGCCCGTGACGCCTGCCTCGACGAGCGCATCATGGCCCTGCCGCGTGGCTACGAC
AGCGTGCCGGGACGCGACCTGCAACTGTCCGGCGGCGAACTGCAACGACTGGCCCTGGCCCGTGCGCTGCTA
TCGCCGGCGCGCCTGTTGCTGCTCGACGAGCCGACCTCGGCGCTGGATCCGCAGACCGCCCGGCAGGTCCTG
CGCAACCTGCGCGAACGCGGCGGCGGCCGGACCCGGGTGATCGTCGCCCATCGTCTGGCCGAAGTCAGCGAT
GCCGACCTGATCCTGGTGCTGGTCGCTGGCCGTCTGGTCGAACGCGGCGAGCACGCGGCGCTGTTGGCGGCG
GACGGCGCCTATGCGCGCTTGTGGCGTGAACAGAACGGCGCGGAGGTGGCGGCATGA
Translation:
MTPVLWRLLRTYRWRLAAAMGLQALAGLCSLLPWMLLAWLAEPLARGQAQPALLALVLLAVLAWLGCQALAA
HLAHRVDADLCNDLRLRLLAHLQRLPLDWFGRQGPDGVARLVEQDVRALHQLIAHAPNDLSNLLVVPLVALL
WLAWLHPWLLLFCLLPLVLAAAGFLLLRSACYRDQVLRRNAALERLSADYGEFAHNLLLARQYPGAGIQQGA
EASAAAFGEAFGAWVKRVGHLAALVYVQLSTPWLLAWVLLGTLALDALGVPLALGQACAFLLLLRALAAPVQ
ALGHGGDALLGARAAAERLQQVFDQAPLAEGRSTRELVDGAVALRGLGHAYEGVEVLADIDLELKDGSLVAL
VGPSGSGKSTLLHLLARYMDAQRGELEIGGLALKDMPDAVRHRHIALVGQQAAALEISLADNIALFRPDADL
QEIRQAARDACLDERIMALPRGYDSVPGRDLQLSGGELQRLALARALLSPARLLLLDEPTSALDPQTARQVL
RNLRERGGGRTRVIVAHRLAEVSDADLILVLVAGRLVERGEHAALLAADGAYARLWREQNGAEVAA*
AnnotationID:619GeneID:610
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 07:07:02
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:pchH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1132,COG4988,COG4987
Secondary Functional Category(ies):energy production and conversion
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC17506.1| (AL939132) putative ABC transporter ATP-binding protein
           [Streptomyces coelicolor A3(2)]
          Length = 608

 Score =  300 bits (767), Expect = 2e-80
 Identities = 216/574 (37%), Positives = 306/574 (53%), Gaps = 19/574 (3%)
Structural Features:
COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components 
[Defense mechanisms]
CD-Length = 567 residues,  99.6% aligned
Score =  310 bits (796), Expect = 2e-85
Identities = 194/568 (34%), Positives = 288/568 (50%), Gaps = 8/568 (1%)

COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, 
ATPase and permease components 
[Energy production and conversion / 
Posttranslational modification, protein turnover, chaperones]
CD-Length = 559 residues,  99.5% aligned
Score =  218 bits (558), Expect = 9e-58
Identities = 174/572 (30%), Positives = 269/572 (47%), Gaps = 38/572 (6%)

COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, 
fused ATPase and permease components 
[Energy production and conversion / 
Posttranslational modification, protein turnover, chaperones]
CD-Length = 573 residues,  98.3% aligned
Score =  200 bits (509), Expect = 5e-52
Identities = 173/570 (30%), Positives = 255/570 (44%), Gaps = 22/570 (3%)
Genomic Context:
Comment:
ReferenceID:14177
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18365
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36922
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:610_cdd.html
URL:
ReferenceID:37011
Author/Investigator(s): Reimmann C, Patel HM, Serino L, Barone M, Walsh CT, Haas D.
Title: Essential PchG-dependent reduction in pyochelin biosynthesis of Pseudomonas aeruginosa.
PubMed: 11208777
MedLine:
Source:
J Bacteriol. 2001 Feb;183(3):813-20.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11208777
Homologs By Global Alignment
Gene ID:610

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1040 PA4223_tr translation of PA4223 570 98.59 98.94 0 2823.0
40505 gb|AAG07611.1|AE004839_4 (AE004839) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1] 570 98.42 98.94 0 2820.0
40506 gb|AAK01464.1| (AF074705) ABC transporter [Pseudomonas aeruginosa] 570 98.42 98.94 0 2820.0
40507 gb|AAQ58500.1| (AE016912) transport ATP-binding protein msbA [Chromobacterium violaceum ATCC 12472] 626 31.15 44.40 98 536.0
40517 dbj|BAC89241.1| (AP006572) HlyB/MsbA family ABC transporter [Gloeobacter violaceus PCC 7421] 634 29.33 43.21 121 444.0
GC ORFID: 43612How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4223Glimmer Score:
Start: 4157444Stop: 4155732
Length: 1713
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4223 translation of PA4223Homolog Bit Score 1092.0
Other Homologs: t_PA4223 (ORF: GLIMMER)
GC ORF Sequence
GTGACCCCGGTGCTGTGGCGCCTGCTGCGCACCTATCGCTGGCGGCTGGCGGCGGCCATGGGGTTGCAGGCC
CTGGCCGGGCTCTGCTCGCTGTTGCCCTGGATGCTTCTCGCCTGGCTCGCCGAGCCGCTGGCGCGCGGCCAG
GCGCAGCCGGCCCTGCTGGCCCTGGTGCTGCTGGCGGTGCTGGCTTGGTTGGGCTGCCAGGCGCTGGCCGCG
CACCTGGCCCACCGGGTCGACGCGGACCTCTGCAACGACCTGCGCCTGCGCCTGCTGGCGCACCTGCAACGG
CTACCGCTGGACTGGTTCGGTCGCCAGGGTCCGGACGGCGTGGCGCGCCTCGTGGAGCAGGACGTGCGGGCC
CTGCACCAACTGATCGCGCACGCTCCCAACGATCTCAGCAACCTGTTGGTGGTGCCGCTCGTCGCGTTGCTC
TGGCTGGCCTGGCTGCACCCCTGGCTGCTGCTGTTCTGCCTGCTGCCGCTGGTGCTGGCCGCCGCCGGCTTC
CTGCTGCTGCGCTCGGCGTGCTACCGCGACCAGGTGCTGCGGCGCAACGCTGCGCTGGAAAGGCTCTCGGCG
GACTATGGCGAATTCGCCCACAACCTGCTGCTGGCCCGACAGTACCCCGGCGCCGGCATACAACAGGGCGCC
GAGGCGTCGGCGGCGGCCTTCGGCGAAGCGTTCGGCGCCTGGGTGAAGCGGGTCGGCCACCTCGCCGCGCTG
GTCTACGTGCAGTTGTCGACGCCCTGGCTGCTGGCCTGGGTCCTGCTCGGCACGCTGGCTCTGGATGCCCTC
GGCGTGCCGCTGGCGCTCGGCCAGGCCTGCGCCTTCCTGCTCCTGCTGCGGGCCCTGGCCGCCCCGGTGCAG
GCGCTCGGCCACGGCGGCGACGCGCTGCTGGGCGCGCGCGCCGCCGCCGAGCGCCTGCAGCAGGTGTTCGAC
CAGGCGCCGCTGGCCGAGGGCCGCTCGACCCGCGAGCTGGTCGATGGCGCGGTGGCGCTGCGCGGCCTGGGC
CATGCCTACGAGGGCGTGGAGGTCCTGGCCGATATCGACCTGGAGCTGAAGGATGGCAGCCTGGTGGCCCTG
GTCGGTCCCTCGGGCTCCGGCAAGAGCACCCTGCTGCACCTGCTGGCGCGCTACATGGACGCGCAGCGCGGC
GAACTGGAGATTGGCGGCCTGGCACTGAAGGACATGCCCGATGCCGTGCGCCATCGGCATATCGCGCTGGTC
GGCCAGCAGGCGGCGGCGCTGGAGATATCCCTGGCCGACAACATCGCCCTGTTCCGCCCCGATGCCGATCTC
CAGGAGATTCGCCAGGCGGCCCGTGACGCCTGCCTCGACGAGCGCATCATGGCCCTGCCGCGTGGCTACGAC
AGCGTGCCGGGACGCGACCTGCAACTGTCCGGCGGCGAACTGCAACGACTGGCCCTGGCCCGTGCGCTGCTA
TCGCCGGCGCGCCTGTTGCTGCTCGACGAGCCGACCTCGGCGCTGGATCCGCAGACCGCCCGGCAGGTCCTG
CGCAACCTGCGCGAACGCGGCGGCGGCCGGACCCGGGTGATCGTCGCCCATCGTCTGGCCGAAGTCAGCGAT
GCCGACCTGATCCTGGTGCTGGTCGCTGGCCGTCTGGTCGAACGCGGCGAGCACGCGGCGCTGTTGGCGGCG
GACGGCGCCTATGCGCGCTTGTGGCGTGAACAGAACGGCGCGGAGGTGGCGGCATGA