ViewGene

Locus Name:
GeneID:
Location:

GeneID:6099
TrivialName: PA14_30900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30900
PAO1 Ortholog Locus:
Sequence Length:726
Protein Length:241
Start: 2683836
Stop: 2683111
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD61154.1| (AJ536756) putative mating pair formation protein [Ralstonia oxalatica]
Identities = 199/239 (83%), Positives = 215/239 (89%), Gaps = 4/239 (1%)
Sequence:
ATGAAGAAGCGCCTTGTCGCCGCTGCCATCGCGGCCATGCTTTGCACCGCCACCGCCCATGCGCAATGGGTC
GTGATCGACCCCACGAACCTCGTGCAGAACACGCTGACCGCGATCCGCACGCTGGAACAGATCAACAACCAA
ATCCAGCAGCTTCAGAACGAAGCGCAGATGCTGATGAATCAGGCGCGCAACCTCGCCAGCCTGCCGTCCAGC
GTCGTCGGCCAGTTGCGCGCCAACCTGGCGACCACCGAGCGGCTGATCGCCCAAGCGCGCGGCTTGGCCTAC
GACGTGACGAATCTGGATCGGGAGTTCGCGCGCCTGTACCCGGAGCAGTACGCCGCCACCGTCAGCGGCGAC
CAGATGTACCGCGACGCCCAAGAGCGGTGGAAGAACACGCTCAACGGCTTGCAGACCACCATGCAGATGCAG
GCGCAGGTGTCGCAGAACCTGGGCGAAGACGAAAGCGTGCTGGCCGATCTGGTCGGCAAGAGCCAGTCAGCG
CAAGGCGCGCTGCAAGCGATGCAGGCCATGAACCAGTTGCTCGCCTTGCAGGCCAAGCAGTCGATCCAGTCG
CAGCGGCTCCAGATCACGCAAGACCGGGCCGCCTCGCTGGAACTGGCGCGGCAGGCGGCGGCCACCGAGCGC
GCCCGCGAAGTGCGGCGGCGCTTCCTCGGGGAAGGCACGCCGTACACGCCGCAGTCCGTCAACTTCTACCGC
GACTGA
Translation:
MKKRLVAAAIAAMLCTATAHAQWVVIDPTNLVQNTLTAIRTLEQINNQIQQLQNEAQMLMNQARNLASLPSS
VVGQLRANLATTERLIAQARGLAYDVTNLDREFARLYPEQYAATVSGDQMYRDAQERWKNTLNGLQTTMQMQ
AQVSQNLGEDESVLADLVGKSQSAQGALQAMQAMNQLLALQAKQSIQSQRLQITQDRAASLELARQAAATER
AREVRRRFLGEGTPYTPQSVNFYRD*
AnnotationID:6100GeneID:6099
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 12:12:04
Gene Name:
Confidence Code:3
GeneProduct:TrbJ-like protein
Cell Localization:()
Synonyms:trbJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5314
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|68527813|gb|EAN50779.1|  probable conjugal transfer trbJ signal peptide protein [Ralstonia metallidurans CH34]
     Length=241
     Score =  433 bits (1114),  Expect = 2e-120
     Identities = 226/239 (94%), Positives = 231/239 (96%), Gaps = 0/239 (0%)

gi|27817727|emb|CAD61154.1|  putative mating pair formation protein [Cupriavidus oxalaticus]
     Length=251
     Score =  379 bits (974),  Expect = 3e-104
     Identities = 199/239 (83%), Positives = 215/239 (89%), Gaps = 4/239 (1%)

gi|17547299|ref|NP_520701.1|  PROBABLE CONJUGAL TRANSFER TRBJ SIGNAL PEPTIDE PROTEIN [Ralstonia 
solanacearum GMI1000]
     Length=245
     Score =  352 bits (902),  Expect = 8e-96
     Identities = 184/245 (75%), Positives = 209/245 (85%), Gaps = 4/245 (1%)

gi|67088811|gb|EAM08277.1|  probable conjugal transfer trbJ signal peptide protein [Azotobacter vinelandii AvOP]
     Length=245
     Score =  350 bits (899),  Expect = 2e-95
     Identities = 183/234 (78%), Positives = 207/234 (88%), Gaps = 0/234 (0%)
Structural Features:
COG5314, Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion].
             CD-Length = 252 residues,  85.7% aligned
             Score =  137 bits (346), Expect = 1e-33
Genomic Context:
Comment:
ReferenceID:12075
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29318
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6099

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198460 emb|CAD61154.1| (AJ536756) putative mating pair formation protein [Ralstonia oxalatica] 255 79.21 86.27 18 971.0
198461 emb|CAD16287.1| (AL646070) PROBABLE CONJUGAL TRANSFER TRBJ SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum] 245 75.10 85.30 4 905.0
198466 emb|CAE27670.1| (BX572600) putative conjugal transfer protein trbJ [Rhodopseudomonas palustris CGA009] 249 46.18 61.44 10 477.0
198463 emb|CAE29561.1| (BX572606) possible conjugal transfer protein trbJ [Rhodopseudomonas palustris CGA009] 246 45.12 61.78 6 486.0
198462 emb|CAD31431.1| (AL672112) PROBABLE TRBJ CONJUGAL TRANSFER PROTEIN [Mesorhizobium loti] 249 44.17 59.43 16 494.0
GC ORFID: 49101How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2270090Stop: 2270815
Length: 726
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAAGAAGCGCCTTGTCGCCGCTGCCATCGCGGCCATGCTTTGCACCGCCACCGCCCATGCGCAATGGGTC
GTGATCGACCCCACGAACCTCGTGCAGAACACGCTGACCGCGATCCGCACGCTGGAACAGATCAACAACCAA
ATCCAGCAGCTTCAGAACGAAGCGCAGATGCTGATGAATCAGGCGCGCAACCTCGCCAGCCTGCCGTCCAGC
GTCGTCGGCCAGTTGCGCGCCAACCTGGCGACCACCGAGCGGCTGATCGCCCAAGCGCGCGGCTTGGCCTAC
GACGTGACGAATCTGGATCGGGAGTTCGCGCGCCTGTACCCGGAGCAGTACGCCGCCACCGTCAGCGGCGAC
CAGATGTACCGCGACGCCCAAGAGCGGTGGAAGAACACGCTCAACGGCTTGCAGACCACCATGCAGATGCAG
GCGCAGGTGTCGCAGAACCTGGGCGAAGACGAAAGCGTGCTGGCCGATCTGGTCGGCAAGAGCCAGTCAGCG
CAAGGCGCGCTGCAAGCGATGCAGGCCATGAACCAGTTGCTCGCCTTGCAGGCCAAGCAGTCGATCCAGTCG
CAGCGGCTCCAGATCACGCAAGACCGGGCCGCCTCGCTGGAACTGGCGCGGCAGGCGGCGGCCACCGAGCGC
GCCCGCGAAGTGCGGCGGCGCTTCCTCGGGGAAGGCACGCCGTACACGCCGCAGTCCGTCAACTTCTACCGC
GACTGA