ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6097

TrivialName: PA14_30910

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_30910

PAO1 Ortholog Locus:

Sequence Length: 2454

Protein Length: 817

Start: 2686286

Stop: 2683833

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAD61153.1| (AJ536756) putative mating pair formation protein [Ralstonia oxalatica] Identities = 759/819 (92%), Positives = 771/819 (94%), Gaps = 4/819 (0%)

Sequence:

ATGCTGAACCTTGCCGAATACCGCCAGCGGCCCGCGCTGCTCGCCGACTGGCTGCCTTGGGCCGGACTGGTC
GCGCCAGGCGTCGTCTTGAACAAGGACGGCAGTTTCCAGCGCACGGCCCGGTTTCGCGGGCCTGACCTCGAC
AGCGCCACGCAAGGCGAGCTGATCGCCACGTCGGCACGCTTGAACAACGCGCTGCGCCGGCTGGGTTCGGGC
TGGGCGCTGTTCATCGAGGCCGAGCGCCGCGCCGCTGCCGACTACCCGCACTCCGAGTTTCCCGAGCCGCTG
TCTTGGCTGGTGGACGAAGAACGCCGGGCCACCTTCGAGGAATCGGGCAACCACTTCGAGAGCGGCTACCAC
CTGACGCTGGTGTACCTGCCGCCCGAGGAATCGCGCGCCCGTGCCGCCAAGATGCTCTACGAGAACACGCCG
ACGAATGGCGTGGACTGGCGCGAGCGGCTGCAAGCCTTCGTCGCGGAAACGGATCGGGTCTTTGACCTGCTC
GAAGGCGTGATGCCGGAAATCGCCTGGCTCGATGACGCGCAGACCCTGACCTACCTGCACGCGACCATCTCG
ACGCGGCGCTACCGCGTGGGCGTACCCGAAGTGCCGTTCCACATCGACGCGCTGCTGACCGATTCGCCGCTG
GTCGGTGGCCTCGCGCCCATGCTGGGCGACCGGCACCTGCGCGTGGTGTCGGTGCGTGGCTTTCCGACCTCG
ACCTGGCCGGGGATTCTGGACGACCTCAACCGCCTGGGATTTGGGTATCGCTGGAGTACGCGCTTTCTGTGC
CTCGACAAATCCGAGGCGGAACGGGAATTGGGGCGCTTGCGCCGCCAGTGGTTCGCCAAGCGCAAGAACGTC
ATCGCGCTGTTGCGCGAAACGATCTTCCAGCAGGAAAGCCCGCTGGTCGATACCGATGCGAACAACAAGGCG
GCGGACGCGGATGCGGCCTTGCAGGAGCTGGGCAGCGATCAAGTCGCCTTCGGCTACCTGACGGCGACCGTC
ACCGTCATGGACGCGGACGCCAGCGCAGCGGACGAGAAGCTGCGCATGGTGGAGCGCGTCATTCAGGGGCGC
GGGTTCGTCACCATCCCCGAAACGCTCAACGCCGTGGATGCGTGGCTGTCCTCGCTTCCGGGCAACGCCTAC
GCCAATGTGCGCCAGCCCATCGTCTCGACGCTGAACCTGGCGCACATGATGCCGGTGTCGGCGGTATGGGCC
GGGCCGGAGAAGAACGACCACCTGGGCGGCCCGCCGCTGATCGTCACGCGCACCGATGGCGCGACGCCGTTC
CGGCTGGTGACGCACATCGGCGACGTGGGCCACACGCTGGTCGCCGGCCCGACCGGCATGGGCAAGTCGGTC
TTGCTCGCCACGCTGGCGATGCAGTTTCGCCGCTATCGCGGCTCGCGCATCTTCGCGTTCGACATGGGCTGC
TCGATGCGCGCCACGATCCTCGGGCTGGGCGGCGAGCACTACGACCTGGGCACGGATGGCGAAATCGCTTTC
CAGCCGCTTGCCCGTATCGACCGTGAAGGCTACCGCACCTGGGCGGCCGAATGGATCGAAGGCCGCTTGCTG
CATGAAGGCGTGACGGTCGGCCCCGATGAGAAGGCCGCCATCTGGTCGGCGCTGGGGAGCCTGGCCGGTGCG
CCGGTGGAGCAGCGCACGATGACCGGGCTTTCCGTGCTGTTGCAGAGCAATGTGCTGCGCCAGGCGCTCGCG
CCCTATGTGCTGGGCGGCGCGCACGGCAAGCTGCTGGACGCCGATCACGACCGGCTGGGCATGGCCGACGTG
CAGTGCTTCGAGATGGAGGAGCTGATGCACAGCAAGGCCGCCGTCATGGCCGTGCTGCATTACCTCTTTGCG
CGTTTCGATGAACGCTTTGACGGTGCGCCCACGCTGCTGATCCTCGATGAAGCGTGGCTGTTCCTCGATGAC
GCGGTGTTCGCGGCGCGCATCCGCCAGTGGCTCAAGACGCTGCGCAAGAAGAACGTCAGCGTCATCTTCGCC
ACGCAGTCGCTTGCGGACATCAAGGATTCGAGCATCGCGCCCGCGATCATCGAAAGCTGCGCAAGCCGCATC
TTCCTGCCGAACCCGCAGGCGACCGAGCCGCAGATTCGCACGATCTACGAGGGCTTCGGCCTCAACAGGCGG
CAGATCGAGATCGTCGCCACCGCGCAGCCCAAGCGCGACTACTACTACCAATCCCGCCTCGGCAACCGCCTG
TTCGACCTCGACCTGGGACTGGCGACGCTGGCCTTCGCGGGCGCTTCCACGCCGCAAGACCAGCGCGACATG
GATCGCGTGCTGCTGGACGCCGGCACGCCCGGCTTCGCGGGCGCATGGCTGCGCCATCGCGGCCTCGATTGG
GCGGCTGACCTGCTGCCCTCGTTCCCCGGCCTCGCGCCGGTTTCCTTCGCTGACCAACCACTGGAGAACCTG
CCATGA

Translation:

MLNLAEYRQRPALLADWLPWAGLVAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSG
WALFIEAERRAAADYPHSEFPEPLSWLVDEERRATFEESGNHFESGYHLTLVYLPPEESRARAAKMLYENTP
TNGVDWRERLQAFVAETDRVFDLLEGVMPEIAWLDDAQTLTYLHATISTRRYRVGVPEVPFHIDALLTDSPL
VGGLAPMLGDRHLRVVSVRGFPTSTWPGILDDLNRLGFGYRWSTRFLCLDKSEAERELGRLRRQWFAKRKNV
IALLRETIFQQESPLVDTDANNKAADADAALQELGSDQVAFGYLTATVTVMDADASAADEKLRMVERVIQGR
GFVTIPETLNAVDAWLSSLPGNAYANVRQPIVSTLNLAHMMPVSAVWAGPEKNDHLGGPPLIVTRTDGATPF
RLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYRGSRIFAFDMGCSMRATILGLGGEHYDLGTDGEIAF
QPLARIDREGYRTWAAEWIEGRLLHEGVTVGPDEKAAIWSALGSLAGAPVEQRTMTGLSVLLQSNVLRQALA
PYVLGGAHGKLLDADHDRLGMADVQCFEMEELMHSKAAVMAVLHYLFARFDERFDGAPTLLILDEAWLFLDD
AVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQIRTIYEGFGLNRR
QIEIVATAQPKRDYYYQSRLGNRLFDLDLGLATLAFAGASTPQDQRDMDRVLLDAGTPGFAGAWLRHRGLDW
AADLLPSFPGLAPVSFADQPLENLP*

AnnotationID:6098 GeneID:6097

AnnotatorUID: danlee

Modification Date/Time: 2005-09-30 12:12:10

Gene Name:

Confidence Code: 3

GeneProduct: TrbE-like protein

Cell Localization: ()

Synonyms: trbE

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (22) Related to phage, transposon, or plasmid

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3451

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|68526023|gb|EAN48997.1|  ATPas [Ralstonia metallidurans CH34]
     Length=819
     Score = 1561 bits (4041),  Expect = 0.0
     Identities = 777/817 (95%), Positives = 794/817 (97%), Gaps = 2/817 (0%)

gi|27817726|emb|CAD61153.1|  putative mating pair formation protein [Cupriavidus oxalaticus]
     Length=817
     Score = 1509 bits (3906),  Expect = 0.0
     Identities = 759/819 (92%), Positives = 771/819 (94%), Gaps = 4/819 (0%)

gi|17547300|ref|NP_520702.1|  PROBABLE CONJUGAL TRANSFER PROTEIN TRBE [Ralstonia 
solanacearum GMI1000]
     Length=816
     Score = 1462 bits (3785),  Expect = 0.0
     Identities = 729/817 (89%), Positives = 760/817 (93%), Gaps = 1/817 (0%)

gi|20803854|emb|CAD31432.1|  PROBABLE TRBE CONJUGAL TRANSFER PROTEIN [Mesorhizobium loti]
     Length=816
     Score = 1024 bits (2648),  Expect = 0.0
     Identities = 513/808 (63%), Positives = 609/808 (75%), Gaps = 7/808 (0%)

gi|27356571|dbj|BAC53550.1|  trbE [Bradyrhizobium japonicum USDA 110]
     Length=812
     Score =  982 bits (2539),  Expect = 0.0
     Identities = 494/809 (61%), Positives = 602/809 (74%), Gaps = 7/809 (0%)

Structural Features:

COG3451, VirB4, Type IV secretory pathway, VirB4 components [Intracellular trafficking 
and secretion].
             CD-Length = 796 residues,  99.7% aligned
             Score =  684 bits (1766), Expect = 0.0

Genomic Context:

Comment:

ReferenceID:12072

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29314

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:6097

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

198445 emb|CAD61153.1| (AJ536756) putative mating pair formation protein [Ralstonia oxalatica] 821 92.57 94.03 8 3913.0

198446 emb|CAD16288.1| (AL646070) PROBABLE CONJUGAL TRANSFER PROTEIN TRBE [Ralstonia solanacearum] 817 89.22 93.02 1 3787.0

198448 dbj|BAB52704.1| (AP003009) conjugal transfer protein; TrbE [Mesorhizobium loti] 825 62.54 74.18 17 2638.0

198447 emb|CAD31432.1| (AL672112) PROBABLE TRBE CONJUGAL TRANSFER PROTEIN [Mesorhizobium loti] 825 62.42 74.18 17 2649.0

198449 dbj|BAB54803.1| (AP003017) conjugal transfer protein; TrbE [Mesorhizobium loti] 827 60.33 73.63 21 2566.0

GC ORFID: `49099`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2267640`	Stop: `2270093`
Length: `2454`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCTGAACCTTGCCGAATACCGCCAGCGGCCCGCGCTGCTCGCCGACTGGCTGCCTTGGGCCGGACTGGTC GCGCCAGGCGTCGTCTTGAACAAGGACGGCAGTTTCCAGCGCACGGCCCGGTTTCGCGGGCCTGACCTCGAC AGCGCCACGCAAGGCGAGCTGATCGCCACGTCGGCACGCTTGAACAACGCGCTGCGCCGGCTGGGTTCGGGC TGGGCGCTGTTCATCGAGGCCGAGCGCCGCGCCGCTGCCGACTACCCGCACTCCGAGTTTCCCGAGCCGCTG TCTTGGCTGGTGGACGAAGAACGCCGGGCCACCTTCGAGGAATCGGGCAACCACTTCGAGAGCGGCTACCAC CTGACGCTGGTGTACCTGCCGCCCGAGGAATCGCGCGCCCGTGCCGCCAAGATGCTCTACGAGAACACGCCG ACGAATGGCGTGGACTGGCGCGAGCGGCTGCAAGCCTTCGTCGCGGAAACGGATCGGGTCTTTGACCTGCTC GAAGGCGTGATGCCGGAAATCGCCTGGCTCGATGACGCGCAGACCCTGACCTACCTGCACGCGACCATCTCG ACGCGGCGCTACCGCGTGGGCGTACCCGAAGTGCCGTTCCACATCGACGCGCTGCTGACCGATTCGCCGCTG GTCGGTGGCCTCGCGCCCATGCTGGGCGACCGGCACCTGCGCGTGGTGTCGGTGCGTGGCTTTCCGACCTCG ACCTGGCCGGGGATTCTGGACGACCTCAACCGCCTGGGATTTGGGTATCGCTGGAGTACGCGCTTTCTGTGC CTCGACAAATCCGAGGCGGAACGGGAATTGGGGCGCTTGCGCCGCCAGTGGTTCGCCAAGCGCAAGAACGTC ATCGCGCTGTTGCGCGAAACGATCTTCCAGCAGGAAAGCCCGCTGGTCGATACCGATGCGAACAACAAGGCG GCGGACGCGGATGCGGCCTTGCAGGAGCTGGGCAGCGATCAAGTCGCCTTCGGCTACCTGACGGCGACCGTC ACCGTCATGGACGCGGACGCCAGCGCAGCGGACGAGAAGCTGCGCATGGTGGAGCGCGTCATTCAGGGGCGC GGGTTCGTCACCATCCCCGAAACGCTCAACGCCGTGGATGCGTGGCTGTCCTCGCTTCCGGGCAACGCCTAC GCCAATGTGCGCCAGCCCATCGTCTCGACGCTGAACCTGGCGCACATGATGCCGGTGTCGGCGGTATGGGCC GGGCCGGAGAAGAACGACCACCTGGGCGGCCCGCCGCTGATCGTCACGCGCACCGATGGCGCGACGCCGTTC CGGCTGGTGACGCACATCGGCGACGTGGGCCACACGCTGGTCGCCGGCCCGACCGGCATGGGCAAGTCGGTC TTGCTCGCCACGCTGGCGATGCAGTTTCGCCGCTATCGCGGCTCGCGCATCTTCGCGTTCGACATGGGCTGC TCGATGCGCGCCACGATCCTCGGGCTGGGCGGCGAGCACTACGACCTGGGCACGGATGGCGAAATCGCTTTC CAGCCGCTTGCCCGTATCGACCGTGAAGGCTACCGCACCTGGGCGGCCGAATGGATCGAAGGCCGCTTGCTG CATGAAGGCGTGACGGTCGGCCCCGATGAGAAGGCCGCCATCTGGTCGGCGCTGGGGAGCCTGGCCGGTGCG CCGGTGGAGCAGCGCACGATGACCGGGCTTTCCGTGCTGTTGCAGAGCAATGTGCTGCGCCAGGCGCTCGCG CCCTATGTGCTGGGCGGCGCGCACGGCAAGCTGCTGGACGCCGATCACGACCGGCTGGGCATGGCCGACGTG CAGTGCTTCGAGATGGAGGAGCTGATGCACAGCAAGGCCGCCGTCATGGCCGTGCTGCATTACCTCTTTGCG CGTTTCGATGAACGCTTTGACGGTGCGCCCACGCTGCTGATCCTCGATGAAGCGTGGCTGTTCCTCGATGAC GCGGTGTTCGCGGCGCGCATCCGCCAGTGGCTCAAGACGCTGCGCAAGAAGAACGTCAGCGTCATCTTCGCC ACGCAGTCGCTTGCGGACATCAAGGATTCGAGCATCGCGCCCGCGATCATCGAAAGCTGCGCAAGCCGCATC TTCCTGCCGAACCCGCAGGCGACCGAGCCGCAGATTCGCACGATCTACGAGGGCTTCGGCCTCAACAGGCGG CAGATCGAGATCGTCGCCACCGCGCAGCCCAAGCGCGACTACTACTACCAATCCCGCCTCGGCAACCGCCTG TTCGACCTCGACCTGGGACTGGCGACGCTGGCCTTCGCGGGCGCTTCCACGCCGCAAGACCAGCGCGACATG GATCGCGTGCTGCTGGACGCCGGCACGCCCGGCTTCGCGGGCGCATGGCTGCGCCATCGCGGCCTCGATTGG GCGGCTGACCTGCTGCCCTCGTTCCCCGGCCTCGCGCCGGTTTCCTTCGCTGACCAACCACTGGAGAACCTG CCATGA