ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6095

TrivialName: PA14_30940

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_30940

PAO1 Ortholog Locus:

Sequence Length: 1071

Protein Length: 356

Start: 2688027

Stop: 2686957

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAD61151.1| (AJ536756) putative mating pair formation protein [Ralstonia oxalatica] Identities = 322/346 (93%), Positives = 332/346 (95%), Gaps = 5/346 (1%)

Sequence:

ATGAGCGCCGTTTCGCAGTTGCCACCCGAGCCACGCTCGTCCGCTGCGGCCTCGCTCGACCGGCGCATCCAG
ATGCTGCGCACGGCGATGGGGCCGCTGATCGCCACTGCGCTCGAAGACCCCGACGTGGTGGAAATCATGCTC
AACCCGGATCGTACCCTTTGGGTGGATCGGCTTTCGAGTGGGCGCGCGCCGATGGGCGTGGAGATGCCCGAG
GCCGATGGCGAGCGAATCATCCGCCTGGTCGCGGCCCACGTCGGCGCGGAGGTGCATCGCGGCCAGCCGCTG
CTATCGGCCGAGCTGCCCGAGACGGGCGAACGCTTCGAGGGCATCTTGCCGCCCGCCGCGCCAGGGCCGGCC
TTCGCGCTGCGCAAGCGCGCCATCGGCGTGATCCCGCTGGAGCGGTATGTCGTGGACGGAATGATGACCGCC
GCCCAGGCGGGCTTTCTGGTGCGCGCCGTGCGCGAGCGTCAGAACGTCCTGATCGCCGGGGCCACCAGCAGC
GGCAAGACCACGCTCGCCAATGCCTTGCTCGCCGAAATCGCCGCCACGGGCGACCGCGTGTTGGTGCTCGAA
GACACGGTGGAGCTGCAATGCGCGGCCCGCGACCACGTTCCGCTGCGCACGCGCGCGGGCGTGGTGTCGATG
ACCGAGCTGGTGCGCTCGTCCATGCGGCTGCGGCCGGATCGCGTGGTGGTTGGCGAGGTGCGCGGCGCCGAG
GCGCTGGATCTCATCAAGGTGTGGGGAACGGGCCACCCCGGCGGGATCGCCACGATCCATGCCGGCTCCGCG
TTGGGCGCGCTGCTGCGCATGGAGCAACTGATTCTCGAAGTGGCGGTGAACCCGCCGCGTGCGCTGATCGCC
GAGGCGGTCAACGTGGTGATCCACATCGCCGGACGCGGGCGCAAGCGCCGCATCGAGAGCATCGCCCGCGTC
GTCGGCTCCGACGGCGTGGGCTACCAACTGGCGGACGCGCTGGAGACGCCGTTTCCCGAACTGCCGCTATTT
CCCGAAGCCGCACCCGCTGCGGCGACTTCCCCGTCCCCTGACCAACCTGGAGAACTGCCATGA

Translation:

MSAVSQLPPEPRSSAAASLDRRIQMLRTAMGPLIATALEDPDVVEIMLNPDRTLWVDRLSSGRAPMGVEMPE
ADGERIIRLVAAHVGAEVHRGQPLLSAELPETGERFEGILPPAAPGPAFALRKRAIGVIPLERYVVDGMMTA
AQAGFLVRAVRERQNVLIAGATSSGKTTLANALLAEIAATGDRVLVLEDTVELQCAARDHVPLRTRAGVVSM
TELVRSSMRLRPDRVVVGEVRGAEALDLIKVWGTGHPGGIATIHAGSALGALLRMEQLILEVAVNPPRALIA
EAVNVVIHIAGRGRKRRIESIARVVGSDGVGYQLADALETPFPELPLFPEAAPAAATSPSPDQPGELP*

AnnotationID:6096 GeneID:6095

AnnotatorUID: danlee

Modification Date/Time: 2005-09-30 13:01:35

Gene Name:

Confidence Code: 3

GeneProduct: putative conjugal transfer protein

Cell Localization: ()

Synonyms: trbB

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (22) Related to phage, transposon, or plasmid

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG4962, pfam00437, cd01130

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|68527809|gb|EAN50775.1|  type II secretion system protein E [Ralstonia metallidurans CH34]
     Length=358
     Score =  628 bits (1620),  Expect = 8e-179
     Identities = 328/351 (93%), Positives = 337/351 (96%), Gaps = 4/351 (1%)

gi|27817724|emb|CAD61151.1|  putative mating pair formation protein [Cupriavidus oxalaticus]
     Length=345
     Score =  618 bits (1593),  Expect = 1e-175
     Identities = 322/346 (93%), Positives = 332/346 (95%), Gaps = 5/346 (1%)

gi|17547303|ref|NP_520705.1|  PROBABLE CONJUGAL TRANSFER PROTEIN TRBB [Ralstonia 
solanacearum GMI1000]
     Length=355
     Score =  610 bits (1572),  Expect = 3e-173
     Identities = 315/356 (88%), Positives = 333/356 (93%), Gaps = 1/356 (0%)

Structural Features:

COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].
             CD-Length = 355 residues,  92.4% aligned
             Score =  283 bits (726), Expect = 2e-77

pfam00437, GSPII_E, Type II/IV secretion system protein. This family contains both 
type II and type IV pathway secretion proteins from bacteria.
             CD-Length = 283 residues, 100.0% aligned
             Score =  243 bits (621), Expect = 3e-65

cd01130, VirB11-like_ATPase, Type IV secretory pathway component VirB11, and related ATPases. 
This alignment contains the C-terminal domain, which is the ATPase.
             CD-Length = 186 residues, 100.0% aligned
             Score =  188 bits (480), Expect = 6e-49

COG0630, VirB11, Type IV secretory pathway, VirB11 components, and related ATPases involved in 
archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion].
             CD-Length = 312 residues,  93.9% aligned
             Score =  141 bits (357), Expect = 1e-34

Genomic Context:

Comment:

ReferenceID:12068

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29310

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:6095

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

198406 emb|CAD61151.1| (AJ536756) putative mating pair formation protein [Ralstonia oxalatica] 356 91.29 94.38 11 1600.0

198407 emb|CAD16291.1| (AL646070) PROBABLE CONJUGAL TRANSFER PROTEIN TRBB [Ralstonia solanacearum] 356 88.48 93.53 1 1574.0

198410 emb|CAE27674.1| (BX572600) conjugal transfer protein trbB [Rhodopseudomonas palustris CGA009] 357 54.62 68.06 31 925.0

198408 emb|CAE29565.1| (BX572606) conjugal transfer protein trbB [Rhodopseudomonas palustris CGA009] 357 53.50 67.78 36 951.0

198409 dbj|BAC53553.1| (AP005965) conjugal transfer protein [Bradyrhizobium japonicum USDA 110] 365 53.42 64.93 42 949.0

GC ORFID: `49097`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2265899`	Stop: `2266969`
Length: `1071`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAGCGCCGTTTCGCAGTTGCCACCCGAGCCACGCTCGTCCGCTGCGGCCTCGCTCGACCGGCGCATCCAG ATGCTGCGCACGGCGATGGGGCCGCTGATCGCCACTGCGCTCGAAGACCCCGACGTGGTGGAAATCATGCTC AACCCGGATCGTACCCTTTGGGTGGATCGGCTTTCGAGTGGGCGCGCGCCGATGGGCGTGGAGATGCCCGAG GCCGATGGCGAGCGAATCATCCGCCTGGTCGCGGCCCACGTCGGCGCGGAGGTGCATCGCGGCCAGCCGCTG CTATCGGCCGAGCTGCCCGAGACGGGCGAACGCTTCGAGGGCATCTTGCCGCCCGCCGCGCCAGGGCCGGCC TTCGCGCTGCGCAAGCGCGCCATCGGCGTGATCCCGCTGGAGCGGTATGTCGTGGACGGAATGATGACCGCC GCCCAGGCGGGCTTTCTGGTGCGCGCCGTGCGCGAGCGTCAGAACGTCCTGATCGCCGGGGCCACCAGCAGC GGCAAGACCACGCTCGCCAATGCCTTGCTCGCCGAAATCGCCGCCACGGGCGACCGCGTGTTGGTGCTCGAA GACACGGTGGAGCTGCAATGCGCGGCCCGCGACCACGTTCCGCTGCGCACGCGCGCGGGCGTGGTGTCGATG ACCGAGCTGGTGCGCTCGTCCATGCGGCTGCGGCCGGATCGCGTGGTGGTTGGCGAGGTGCGCGGCGCCGAG GCGCTGGATCTCATCAAGGTGTGGGGAACGGGCCACCCCGGCGGGATCGCCACGATCCATGCCGGCTCCGCG TTGGGCGCGCTGCTGCGCATGGAGCAACTGATTCTCGAAGTGGCGGTGAACCCGCCGCGTGCGCTGATCGCC GAGGCGGTCAACGTGGTGATCCACATCGCCGGACGCGGGCGCAAGCGCCGCATCGAGAGCATCGCCCGCGTC GTCGGCTCCGACGGCGTGGGCTACCAACTGGCGGACGCGCTGGAGACGCCGTTTCCCGAACTGCCGCTATTT CCCGAAGCCGCACCCGCTGCGGCGACTTCCCCGTCCCCTGACCAACCTGGAGAACTGCCATGA