ViewGene
Locus Name:
GeneID:
Location:

GeneID:6094
TrivialName: PA14_30950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30950
PAO1 Ortholog Locus:
Sequence Length:465
Protein Length:154
Start: 2688488
Stop: 2688024
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD61150.1| (AJ536756) hypothetical protein [Ralstonia oxalatica]
Identities = 150/154 (97%), Positives = 153/154 (99%)
Sequence:
ATGAGCCACTACCGCCTGAACCTCTTTATCCAGCCCGAGCACGCCCAGCGGCTTGATGAACTGGCCGCCAAG
AAAGGCGTATCCAAGTCGTCCATCGTCGCGGCGGCGCTCGCATCGTGGCTATCGCCCGATGCTGCTGACCAG
CGCGAAGCGGCCATCGCCAAGCGGCTCGACCGGCTGTCGCGCCAGGCCGAGCGCATGGAGCGCGACCAGAAC
ATCGCCATCGAGACGCTGGCGCTGTTCATCCGCTACTACCTGACCGTCAGCACGCCGGTTCCCGAGGCGCAT
CAAGAGGCAGCTCGCGCCCAGGGCAAGGCGCGCTTCGAGCAGTTCACCGAGCAGCTTGGCCGCCACCTGATG
CGCGGACGCAGCTTGGTGCGCGACGTGGTGGAAGAACTGCATCCCGACCCGATGCGGATGGAGGACGCGGCG
GCAGCCGCCCAGGCGCGGGAGCGTGCGTCATGA
Translation:
MSHYRLNLFIQPEHAQRLDELAAKKGVSKSSIVAAALASWLSPDAADQREAAIAKRLDRLSRQAERMERDQN
IAIETLALFIRYYLTVSTPVPEAHQEAARAQGKARFEQFTEQLGRHLMRGRSLVRDVVEELHPDPMRMEDAA
AAAQARERAS*
AnnotationID:6095GeneID:6094
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 13:01:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|27817723|emb|CAD61150.1|  hypothetical protein [Cupriavidus oxalaticus]
     Length=154
     Score =  293 bits (749),  Expect = 1e-78
     Identities = 150/154 (97%), Positives = 153/154 (99%), Gaps = 0/154 (0%)


gi|68527808|gb|EAN50774.1|  conserved hypothetical/unknown protein [Ralstonia metallidurans CH34]
     Length=154
     Score =  288 bits (736),  Expect = 5e-77
     Identities = 148/154 (96%), Positives = 152/154 (98%), Gaps = 0/154 (0%)

gi|67088816|gb|EAM08282.1|  conserved hypothetical/unknown protein [Azotobacter vinelandii AvOP]
     Length=154
     Score =  273 bits (697),  Expect = 2e-72
     Identities = 138/154 (89%), Positives = 148/154 (96%), Gaps = 0/154 (0%)

gi|72607437|gb|EAO43397.1|  Helix-turn-helix protein, CopG [Burkholderia ambifaria AMMD]
     Length=158
     Score =  269 bits (687),  Expect = 2e-71
     Identities = 137/154 (88%), Positives = 146/154 (94%), Gaps = 0/154 (0%)

gi|17547304|ref|NP_520706.1|  HYPOTHETICAL/UNKNOWN PROTEIN [Ralstonia solanacearum GMI1000]
     Length=158
     Score =  259 bits (661),  Expect = 2e-68
     Identities = 135/158 (85%), Positives = 144/158 (91%), Gaps = 4/158 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:12066




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29308




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6094
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198398
                           emb|CAD61150.1|
                           (AJ536756) hypothetical protein [Ralstonia oxalatica]
                           154
                           97.40
                           99.35
                           0
                           749.0
     

     
     
198399
                           emb|CAD16292.1|
                           (AL646070) HYPOTHETICAL/UNKNOWN PROTEIN [Ralstonia solanacearum]
                           158
                           85.44
                           91.13
                           4
                           664.0
     

     
     
198401
                           dbj|BAC45307.1|
                           (AP005935) bll0042 [Bradyrhizobium japonicum USDA 110]
                           158
                           37.34
                           59.49
                           16
                           277.0
     

     
     
198400
                           emb|CAE27675.1|
                           (BX572600) conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
                           167
                           37.12
                           57.48
                           33
                           288.0
     

     
     
198402
                           dbj|BAB54920.1|
                           (AP003017) unknown protein [Mesorhizobium loti]
                           163
                           35.58
                           57.05
                           23
                           277.0
     

     






      

          
GC ORFID: 49096How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2265438Stop: 2265902

          
Length: 465


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAGCCACTACCGCCTGAACCTCTTTATCCAGCCCGAGCACGCCCAGCGGCTTGATGAACTGGCCGCCAAG 
AAAGGCGTATCCAAGTCGTCCATCGTCGCGGCGGCGCTCGCATCGTGGCTATCGCCCGATGCTGCTGACCAG 
CGCGAAGCGGCCATCGCCAAGCGGCTCGACCGGCTGTCGCGCCAGGCCGAGCGCATGGAGCGCGACCAGAAC 
ATCGCCATCGAGACGCTGGCGCTGTTCATCCGCTACTACCTGACCGTCAGCACGCCGGTTCCCGAGGCGCAT 
CAAGAGGCAGCTCGCGCCCAGGGCAAGGCGCGCTTCGAGCAGTTCACCGAGCAGCTTGGCCGCCACCTGATG 
CGCGGACGCAGCTTGGTGCGCGACGTGGTGGAAGAACTGCATCCCGACCCGATGCGGATGGAGGACGCGGCG 
GCAGCCGCCCAGGCGCGGGAGCGTGCGTCATGA