ViewGene

Locus Name:
GeneID:
Location:

GeneID:6093
TrivialName: PA14_30960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30960
PAO1 Ortholog Locus:
Sequence Length:2001
Protein Length:666
Start: 2690485
Stop: 2688485
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD61149.1| (AJ536756) putative conjugal transfer protein [Ralstonia oxalatica]
Identities = 624/667 (93%), Positives = 644/667 (96%), Gaps = 1/667 (0%)
Sequence:
ATGCAAGGGACGAACGTGCTGTTCGGTCAGATCGCCGTGGTATTCGGCATCGTGATCGCCGGAGTGTGGGGC
GCCACACAATGGACAGCAGCAGCCCTTGGCTATCAGCTACGCCTTGGCTCGCCCTGGTTCGATTTTCTTGGC
ACGCCGATCTACTACCCGTGGAAGCTGTTTGAGTGGTGGTTCTCTTACGGCGCCTATACCCCGGAAATCTTC
GACACGGGCGGAGCCATCGCCGGTGGCAGCGGCATGGTCGCCGTGGCCGTCGCCATTGCCATGTCGGTCTGG
CGCTCGCGACAGGCACGCCTGGTCACGACCTACGGTTCGGCCCGTTGGGCGAATGCGCAGGACATTCGCAAG
GCGGGCCTCACGCAGCCGGTCGGCGTGTTCCTCGGCCAGTACGATCGCCAGTACCTGCGCCATGAAGGGCCA
GAGCATGTTCTGACCTTCGCGCCCACACGCTCGGGCAAGGGCGTCGGCCTGGTGGTTCCCACCTTGTTGAGC
TGGCCGGCCTCGGCGGTCATCCACGACATCAAGGGGGAGAACTGGCAGATCACCGCCGGCTGGCGCAGCCGT
TTCAGCCACTGCCTGCTGTTCAACCCGACCGATGCAAAGTCGGCGGCCTACAACCCGCTGCTGGAGGTACGG
CGCGGCGCGCATGAAGTGCGCGACGTGCAGAACATCGCGGACATTCTAGTCGATCCCGAAGGCGCGCTGGAG
AAGCGCAACCATTGGGAGAAGACCTCGCACGCGCTGCTGGTCGGGGCGATCCTGCATGTGCTCTATGCGGGC
GAGGACAAGACGCTGCGCGGCGTCGCCAACTTCCTCAGCGACCCGGCCAGCCCCTTCGAGCTGACCTTGCAC
CGGATGATGACCACGCCCCACCTGGGCGATGGGCCGCATCCGGTGGTGGCATCCGCTGCGCGCGAAGTGCTC
AACAAGTCGGACAACGAGCGTTCTGGCGTCTTGAGCACCGCCATGTCGTTCCTCGGCCTGTACCGCGATCCC
ACGGTGGCCGAAGTCACGTCGCGCTGCGACTGGCGCATTGCCGACCTCATATCCGCCGAGCATCCCGTATCG
CTGTACCTGGTGGTGCCGCCTTCGGACATTTCGCGCACCAAGCCGCTCATCCGCCTGATCCTCAACCAGATC
GGGCGGCGCTTGACCGAATCGCTCGACGGCTCTGACGGCATCGAACGCCGCCACAAGCTGCTGCTGATGCTC
GATGAGTTTCCGGCCCTGGGCCGGCTCGACTTCTTCGAGACGGCGCTCGCATTCATGGCGGGCTACGGCATC
CGCAGCTTCTTGATTGCGCAGTCGCTCAACCAGATCGACAAAGCCTACGGCCAGAACCATTCGATTCTGGAC
AACTGCCATGTGCGCGTGACGTTCGCCACGAACGACGAGCGCACCGCCAAACGCATCTCCGAGACGCTGGGC
ACGGCCACCGAGCTGCGCGCACAGCGCAACTACGCGGGCCACCGGCTCGCGCCGTGGCTGGGGCACCTCATG
GTGTCGCGCCAGGAGACGGCCCGCCCGCTGCTGACACCGGGCGAAGTCATGCAGCTTCCGCCCGATGAGGCG
GTGGTGATGGTGTCCAGCGTGGCGCCGATCAAGGCCCGGAAGCTGCGCTATTACGCCGACGCCAATTTCAAG
CGGCGCGTGTTGCCGCCGCCCGCGCTGGCGGACTGCCAATACGCCGACGCGCCGCCGCTGCGCGCCGACGAC
TGGAGCGGGCTGGCAATCCCACCAACGCCCACCGCACCAGCCACGGCATCCGCCGATGGCCTCGGTTCCGCC
GACGACGGCGGCCCACGCCGTCAGCCCGAACTCTCCGAAGCCGTCGCCTACGACCCCGAGCTGGCCGCGCCC
GCGGCCGACCTCGGTTTGCTCGATGACGACGACGACCTGCCGCTTCCCCTTCCTCGCCAGCTTGATCCGGCC
ATGCAGCGCACGGCCCGGCTGGCTTCCCTCGACCCCAACGACGGAATTGAGCTATGA
Translation:
MQGTNVLFGQIAVVFGIVIAGVWGATQWTAAALGYQLRLGSPWFDFLGTPIYYPWKLFEWWFSYGAYTPEIF
DTGGAIAGGSGMVAVAVAIAMSVWRSRQARLVTTYGSARWANAQDIRKAGLTQPVGVFLGQYDRQYLRHEGP
EHVLTFAPTRSGKGVGLVVPTLLSWPASAVIHDIKGENWQITAGWRSRFSHCLLFNPTDAKSAAYNPLLEVR
RGAHEVRDVQNIADILVDPEGALEKRNHWEKTSHALLVGAILHVLYAGEDKTLRGVANFLSDPASPFELTLH
RMMTTPHLGDGPHPVVASAAREVLNKSDNERSGVLSTAMSFLGLYRDPTVAEVTSRCDWRIADLISAEHPVS
LYLVVPPSDISRTKPLIRLILNQIGRRLTESLDGSDGIERRHKLLLMLDEFPALGRLDFFETALAFMAGYGI
RSFLIAQSLNQIDKAYGQNHSILDNCHVRVTFATNDERTAKRISETLGTATELRAQRNYAGHRLAPWLGHLM
VSRQETARPLLTPGEVMQLPPDEAVVMVSSVAPIKARKLRYYADANFKRRVLPPPALADCQYADAPPLRADD
WSGLAIPPTPTAPATASADGLGSADDGGPRRQPELSEAVAYDPELAAPAADLGLLDDDDDLPLPLPRQLDPA
MQRTARLASLDPNDGIEL*
AnnotationID:6094GeneID:6093
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 13:01:57
Gene Name:
Confidence Code:3
GeneProduct:TraG-like protein
Cell Localization:()
Synonyms:traG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3505, cd01126, pfam02534
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|68527807|gb|EAN50773.1|  TRAG protein [Ralstonia metallidurans CH34]
     Length=669
     Score = 1280 bits (3313),  Expect = 0.0
     Identities = 633/669 (94%), Positives = 648/669 (96%), Gaps = 3/669 (0%)

gi|27817722|emb|CAD61149.1|  putative conjugal transfer protein [Cupriavidus oxalaticus]
     Length=667
     Score = 1271 bits (3290),  Expect = 0.0
     Identities = 624/667 (93%), Positives = 644/667 (96%), Gaps = 1/667 (0%)

gi|67088817|gb|EAM08283.1|  TRAG protein [Azotobacter vinelandii AvOP]
     Length=666
     Score = 1223 bits (3164),  Expect = 0.0
     Identities = 602/666 (90%), Positives = 624/666 (93%), Gaps = 0/666 (0%)

gi|72607438|gb|EAO43398.1|  TRAG protein [Burkholderia ambifaria AMMD]
     Length=665
     Score = 1216 bits (3145),  Expect = 0.0
     Identities = 604/666 (90%), Positives = 620/666 (93%), Gaps = 1/666 (0%)

gi|17547305|ref|NP_520707.1|  PROBABLE PLASMID CONJUGATION TRAG TRANSMEMBRANE PROTEIN 
[Ralstonia solanacearum GMI1000]
     Length=675
     Score = 1211 bits (3134),  Expect = 0.0
     Identities = 602/675 (89%), Positives = 624/675 (92%), Gaps = 9/675 (1%)

gi|20803859|emb|CAD31437.1|  PROBABLE TRAG CONJUGAL TRANSFER TRANSMEMBRANE 
PROTEIN [Mesorhizobium loti]
     Length=783
     Score =  893 bits (2307),  Expect = 0.0
     Identities = 448/652 (68%), Positives = 512/652 (78%), Gaps = 13/652 (1%)
Structural Features:
COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].
             CD-Length = 596 residues,  96.6% aligned
             Score =  557 bits (1437), Expect = 1e-159

cd01126, TraG_VirD4, The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in 
type IV secretion. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
             CD-Length = 384 residues, 100.0% aligned
             Score =  370 bits (951), Expect = 3e-103

pfam02534, TRAG, TraG/TraD family. The TraG/TraD family are bacterial conjugation proteins.
             CD-Length = 468 residues,  98.5% aligned
             Score =  328 bits (842), Expect = 1e-90
Genomic Context:
Comment:
ReferenceID:12064
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29306
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6093

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198388 emb|CAD61149.1| (AJ536756) putative conjugal transfer protein [Ralstonia oxalatica] 667 93.55 96.55 1 3292.0
198389 emb|CAD16293.1| (AL646070) PROBABLE PLASMID CONJUGATION TRAG TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 675 89.18 92.44 9 3143.0
198392 emb|CAE27676.1| (BX572600) plasmid transfer factor, traG protein [Rhodopseudomonas palustris CGA009] 672 66.81 77.38 11 2307.0
198395 emb|CAE29573.1| (BX572606) plasmid transfer factor, traG [Rhodopseudomonas palustris CGA009] 672 65.77 76.33 14 2233.0
198394 dbj|BAC45308.1| (AP005935) conjugal transfer protein [Bradyrhizobium japonicum USDA 110] 688 63.51 74.56 35 2238.0
GC ORFID: 49095How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2263441Stop: 2265441
Length: 2001
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCAAGGGACGAACGTGCTGTTCGGTCAGATCGCCGTGGTATTCGGCATCGTGATCGCCGGAGTGTGGGGC
GCCACACAATGGACAGCAGCAGCCCTTGGCTATCAGCTACGCCTTGGCTCGCCCTGGTTCGATTTTCTTGGC
ACGCCGATCTACTACCCGTGGAAGCTGTTTGAGTGGTGGTTCTCTTACGGCGCCTATACCCCGGAAATCTTC
GACACGGGCGGAGCCATCGCCGGTGGCAGCGGCATGGTCGCCGTGGCCGTCGCCATTGCCATGTCGGTCTGG
CGCTCGCGACAGGCACGCCTGGTCACGACCTACGGTTCGGCCCGTTGGGCGAATGCGCAGGACATTCGCAAG
GCGGGCCTCACGCAGCCGGTCGGCGTGTTCCTCGGCCAGTACGATCGCCAGTACCTGCGCCATGAAGGGCCA
GAGCATGTTCTGACCTTCGCGCCCACACGCTCGGGCAAGGGCGTCGGCCTGGTGGTTCCCACCTTGTTGAGC
TGGCCGGCCTCGGCGGTCATCCACGACATCAAGGGGGAGAACTGGCAGATCACCGCCGGCTGGCGCAGCCGT
TTCAGCCACTGCCTGCTGTTCAACCCGACCGATGCAAAGTCGGCGGCCTACAACCCGCTGCTGGAGGTACGG
CGCGGCGCGCATGAAGTGCGCGACGTGCAGAACATCGCGGACATTCTAGTCGATCCCGAAGGCGCGCTGGAG
AAGCGCAACCATTGGGAGAAGACCTCGCACGCGCTGCTGGTCGGGGCGATCCTGCATGTGCTCTATGCGGGC
GAGGACAAGACGCTGCGCGGCGTCGCCAACTTCCTCAGCGACCCGGCCAGCCCCTTCGAGCTGACCTTGCAC
CGGATGATGACCACGCCCCACCTGGGCGATGGGCCGCATCCGGTGGTGGCATCCGCTGCGCGCGAAGTGCTC
AACAAGTCGGACAACGAGCGTTCTGGCGTCTTGAGCACCGCCATGTCGTTCCTCGGCCTGTACCGCGATCCC
ACGGTGGCCGAAGTCACGTCGCGCTGCGACTGGCGCATTGCCGACCTCATATCCGCCGAGCATCCCGTATCG
CTGTACCTGGTGGTGCCGCCTTCGGACATTTCGCGCACCAAGCCGCTCATCCGCCTGATCCTCAACCAGATC
GGGCGGCGCTTGACCGAATCGCTCGACGGCTCTGACGGCATCGAACGCCGCCACAAGCTGCTGCTGATGCTC
GATGAGTTTCCGGCCCTGGGCCGGCTCGACTTCTTCGAGACGGCGCTCGCATTCATGGCGGGCTACGGCATC
CGCAGCTTCTTGATTGCGCAGTCGCTCAACCAGATCGACAAAGCCTACGGCCAGAACCATTCGATTCTGGAC
AACTGCCATGTGCGCGTGACGTTCGCCACGAACGACGAGCGCACCGCCAAACGCATCTCCGAGACGCTGGGC
ACGGCCACCGAGCTGCGCGCACAGCGCAACTACGCGGGCCACCGGCTCGCGCCGTGGCTGGGGCACCTCATG
GTGTCGCGCCAGGAGACGGCCCGCCCGCTGCTGACACCGGGCGAAGTCATGCAGCTTCCGCCCGATGAGGCG
GTGGTGATGGTGTCCAGCGTGGCGCCGATCAAGGCCCGGAAGCTGCGCTATTACGCCGACGCCAATTTCAAG
CGGCGCGTGTTGCCGCCGCCCGCGCTGGCGGACTGCCAATACGCCGACGCGCCGCCGCTGCGCGCCGACGAC
TGGAGCGGGCTGGCAATCCCACCAACGCCCACCGCACCAGCCACGGCATCCGCCGATGGCCTCGGTTCCGCC
GACGACGGCGGCCCACGCCGTCAGCCCGAACTCTCCGAAGCCGTCGCCTACGACCCCGAGCTGGCCGCGCCC
GCGGCCGACCTCGGTTTGCTCGATGACGACGACGACCTGCCGCTTCCCCTTCCTCGCCAGCTTGATCCGGCC
ATGCAGCGCACGGCCCGGCTGGCTTCCCTCGACCCCAACGACGGAATTGAGCTATGA