Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: emb|CAD61149.1| (AJ536756) putative conjugal transfer protein [Ralstonia oxalatica]
Identities = 624/667 (93%), Positives = 644/667 (96%), Gaps = 1/667 (0%)
Sequence:
ATGCAAGGGACGAACGTGCTGTTCGGTCAGATCGCCGTGGTATTCGGCATCGTGATCGCCGGAGTGTGGGGC
GCCACACAATGGACAGCAGCAGCCCTTGGCTATCAGCTACGCCTTGGCTCGCCCTGGTTCGATTTTCTTGGC
ACGCCGATCTACTACCCGTGGAAGCTGTTTGAGTGGTGGTTCTCTTACGGCGCCTATACCCCGGAAATCTTC
GACACGGGCGGAGCCATCGCCGGTGGCAGCGGCATGGTCGCCGTGGCCGTCGCCATTGCCATGTCGGTCTGG
CGCTCGCGACAGGCACGCCTGGTCACGACCTACGGTTCGGCCCGTTGGGCGAATGCGCAGGACATTCGCAAG
GCGGGCCTCACGCAGCCGGTCGGCGTGTTCCTCGGCCAGTACGATCGCCAGTACCTGCGCCATGAAGGGCCA
GAGCATGTTCTGACCTTCGCGCCCACACGCTCGGGCAAGGGCGTCGGCCTGGTGGTTCCCACCTTGTTGAGC
TGGCCGGCCTCGGCGGTCATCCACGACATCAAGGGGGAGAACTGGCAGATCACCGCCGGCTGGCGCAGCCGT
TTCAGCCACTGCCTGCTGTTCAACCCGACCGATGCAAAGTCGGCGGCCTACAACCCGCTGCTGGAGGTACGG
CGCGGCGCGCATGAAGTGCGCGACGTGCAGAACATCGCGGACATTCTAGTCGATCCCGAAGGCGCGCTGGAG
AAGCGCAACCATTGGGAGAAGACCTCGCACGCGCTGCTGGTCGGGGCGATCCTGCATGTGCTCTATGCGGGC
GAGGACAAGACGCTGCGCGGCGTCGCCAACTTCCTCAGCGACCCGGCCAGCCCCTTCGAGCTGACCTTGCAC
CGGATGATGACCACGCCCCACCTGGGCGATGGGCCGCATCCGGTGGTGGCATCCGCTGCGCGCGAAGTGCTC
AACAAGTCGGACAACGAGCGTTCTGGCGTCTTGAGCACCGCCATGTCGTTCCTCGGCCTGTACCGCGATCCC
ACGGTGGCCGAAGTCACGTCGCGCTGCGACTGGCGCATTGCCGACCTCATATCCGCCGAGCATCCCGTATCG
CTGTACCTGGTGGTGCCGCCTTCGGACATTTCGCGCACCAAGCCGCTCATCCGCCTGATCCTCAACCAGATC
GGGCGGCGCTTGACCGAATCGCTCGACGGCTCTGACGGCATCGAACGCCGCCACAAGCTGCTGCTGATGCTC
GATGAGTTTCCGGCCCTGGGCCGGCTCGACTTCTTCGAGACGGCGCTCGCATTCATGGCGGGCTACGGCATC
CGCAGCTTCTTGATTGCGCAGTCGCTCAACCAGATCGACAAAGCCTACGGCCAGAACCATTCGATTCTGGAC
AACTGCCATGTGCGCGTGACGTTCGCCACGAACGACGAGCGCACCGCCAAACGCATCTCCGAGACGCTGGGC
ACGGCCACCGAGCTGCGCGCACAGCGCAACTACGCGGGCCACCGGCTCGCGCCGTGGCTGGGGCACCTCATG
GTGTCGCGCCAGGAGACGGCCCGCCCGCTGCTGACACCGGGCGAAGTCATGCAGCTTCCGCCCGATGAGGCG
GTGGTGATGGTGTCCAGCGTGGCGCCGATCAAGGCCCGGAAGCTGCGCTATTACGCCGACGCCAATTTCAAG
CGGCGCGTGTTGCCGCCGCCCGCGCTGGCGGACTGCCAATACGCCGACGCGCCGCCGCTGCGCGCCGACGAC
TGGAGCGGGCTGGCAATCCCACCAACGCCCACCGCACCAGCCACGGCATCCGCCGATGGCCTCGGTTCCGCC
GACGACGGCGGCCCACGCCGTCAGCCCGAACTCTCCGAAGCCGTCGCCTACGACCCCGAGCTGGCCGCGCCC
GCGGCCGACCTCGGTTTGCTCGATGACGACGACGACCTGCCGCTTCCCCTTCCTCGCCAGCTTGATCCGGCC
ATGCAGCGCACGGCCCGGCTGGCTTCCCTCGACCCCAACGACGGAATTGAGCTATGA
Translation:
MQGTNVLFGQIAVVFGIVIAGVWGATQWTAAALGYQLRLGSPWFDFLGTPIYYPWKLFEWWFSYGAYTPEIF
DTGGAIAGGSGMVAVAVAIAMSVWRSRQARLVTTYGSARWANAQDIRKAGLTQPVGVFLGQYDRQYLRHEGP
EHVLTFAPTRSGKGVGLVVPTLLSWPASAVIHDIKGENWQITAGWRSRFSHCLLFNPTDAKSAAYNPLLEVR
RGAHEVRDVQNIADILVDPEGALEKRNHWEKTSHALLVGAILHVLYAGEDKTLRGVANFLSDPASPFELTLH
RMMTTPHLGDGPHPVVASAAREVLNKSDNERSGVLSTAMSFLGLYRDPTVAEVTSRCDWRIADLISAEHPVS
LYLVVPPSDISRTKPLIRLILNQIGRRLTESLDGSDGIERRHKLLLMLDEFPALGRLDFFETALAFMAGYGI
RSFLIAQSLNQIDKAYGQNHSILDNCHVRVTFATNDERTAKRISETLGTATELRAQRNYAGHRLAPWLGHLM
VSRQETARPLLTPGEVMQLPPDEAVVMVSSVAPIKARKLRYYADANFKRRVLPPPALADCQYADAPPLRADD
WSGLAIPPTPTAPATASADGLGSADDGGPRRQPELSEAVAYDPELAAPAADLGLLDDDDDLPLPLPRQLDPA
MQRTARLASLDPNDGIEL*
AnnotationID:6094 GeneID:6093
Modification Date/Time:
2005-09-30 13:01:57
GeneProduct: TraG-like protein
Cell Localization Confidence Code: 5
Functional Category: (22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: gi|68527807| gb|EAN50773.1| TRAG protein [Ralstonia metallidurans CH34]
Length=669
Score = 1280 bits (3313), Expect = 0.0
Identities = 633/669 (94%), Positives = 648/669 (96%), Gaps = 3/669 (0%)
gi|27817722| emb|CAD61149.1| putative conjugal transfer protein [Cupriavidus oxalaticus]
Length=667
Score = 1271 bits (3290), Expect = 0.0
Identities = 624/667 (93%), Positives = 644/667 (96%), Gaps = 1/667 (0%)
gi|67088817| gb|EAM08283.1| TRAG protein [Azotobacter vinelandii AvOP]
Length=666
Score = 1223 bits (3164), Expect = 0.0
Identities = 602/666 (90%), Positives = 624/666 (93%), Gaps = 0/666 (0%)
gi|72607438| gb|EAO43398.1| TRAG protein [Burkholderia ambifaria AMMD]
Length=665
Score = 1216 bits (3145), Expect = 0.0
Identities = 604/666 (90%), Positives = 620/666 (93%), Gaps = 1/666 (0%)
gi|17547305| ref|NP_520707.1| PROBABLE PLASMID CONJUGATION TRAG TRANSMEMBRANE PROTEIN
[Ralstonia solanacearum GMI1000]
Length=675
Score = 1211 bits (3134), Expect = 0.0
Identities = 602/675 (89%), Positives = 624/675 (92%), Gaps = 9/675 (1%)
gi|20803859| emb|CAD31437.1| PROBABLE TRAG CONJUGAL TRANSFER TRANSMEMBRANE
PROTEIN [Mesorhizobium loti]
Length=783
Score = 893 bits (2307), Expect = 0.0
Identities = 448/652 (68%), Positives = 512/652 (78%), Gaps = 13/652 (1%)
Structural Features: COG3505 , VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].
CD-Length = 596 residues, 96.6% aligned
Score = 557 bits (1437), Expect = 1e-159
cd01126 , TraG_VirD4, The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in
type IV secretion. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
CD-Length = 384 residues, 100.0% aligned
Score = 370 bits (951), Expect = 3e-103
pfam02534 , TRAG, TraG/TraD family. The TraG/TraD family are bacterial conjugation proteins.
CD-Length = 468 residues, 98.5% aligned
Score = 328 bits (842), Expect = 1e-90