ViewGene

Locus Name:
GeneID:
Location:

GeneID:6092
TrivialName: PA14_30970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30970
PAO1 Ortholog Locus:
Sequence Length:996
Protein Length:331
Start: 2692000
Stop: 2691005
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD61148.1| (AJ536756) transcription regulator [Ralstonia oxalatica]
Identities = 269/323 (83%), Positives = 288/323 (89%), Gaps = 1/323 (0%)
Sequence:
ATGGCTCTAGCATTAACCGAGAAGCAAGTGCTATGTCGGCTCGGAGGGAATGAATATTCTATGGAGTTGAGA
CACCTGAAGTATTTTCTCGCCGTAGCTGAGGAGCTTCGCTTCGCCCGTGCCGCAGAGAAGCTGCACATTGAG
CAATCGCCCTTGTCCCGAGCCATCAAGGAACTGGAAGAAGAACTGGGTGTTGTGCTGTTTGCCCGCACCACC
CGCAGCACCAGGCTAACCCGCGCTGGCAAGTTGTTCTTGGAGCACGTTCGTCGCGTACTCGCTGCTGTGGAA
CAGGCTCGCGAGAGCGTCAAGGCTGCGGCCAACGGCTTTCACGGGCAGTTGCGCGTGGCGTTGTCCGATGGC
ATCACGCCATCGCGTCTATCTGCCTTGCTCGTACTTTGTCGCCAGGAAGAACCTGAGGTAGAAATCCGATTC
TTCGAGGTGCCCCTGTCACAGCAGATCAAAGGGCTTCATAGCGATCTGTACGACGTGGGATTCGCCCAGTCC
AACGAGGTTGGTGATGGCATCGTCACCGTACCTGCCTGGAGCGATACGCTGATGGTCGCGGTTCCTGGCCGG
CATCCGCTGCTGGCCCACAAACGCATCCCCTTGGATGAGCTGCTGCGCTACCCATTGGTCTTGTGCGATCCG
CAAGTGTGCGAAGGCCACGCCAAGCATGTCGAACGAGTGCTTCGCCATACTGAGATGGAGCCTTTGATTGCA
GAACGTGTTGCTTCTTGCGACCTGATGATGGCGCTGGTATCGGCTGGTTTCGCGCTCGGGCTGGCCGGCGCC
GCACACATTGCCGCCAGCCGTGAGCCAGGTGTCGTGGCCCGTCCGCTGGCGCAGCGCGTGCCACCGTTGACG
ACGTACTTGCTTCATCTTGACGGTGATCTATCCGACGAACTGGCAAGATTCATTGAGCGCGTACAGACCATC
GAATCTCTGGAACCCCCAAGGCCGATACGAGGTCGAAATCCCGATGCTTCGGAGGAATGA
Translation:
MALALTEKQVLCRLGGNEYSMELRHLKYFLAVAEELRFARAAEKLHIEQSPLSRAIKELEEELGVVLFARTT
RSTRLTRAGKLFLEHVRRVLAAVEQARESVKAAANGFHGQLRVALSDGITPSRLSALLVLCRQEEPEVEIRF
FEVPLSQQIKGLHSDLYDVGFAQSNEVGDGIVTVPAWSDTLMVAVPGRHPLLAHKRIPLDELLRYPLVLCDP
QVCEGHAKHVERVLRHTEMEPLIAERVASCDLMMALVSAGFALGLAGAAHIAASREPGVVARPLAQRVPPLT
TYLLHLDGDLSDELARFIERVQTIESLEPPRPIRGRNPDASEE*
AnnotationID:6093GeneID:6092
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 14:02:51
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:bphR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583, pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|27817721|emb|CAD61148.1|  transcription regulator [Cupriavidus oxalaticus]
     Length=347
     Score =  528 bits (1361),  Expect = 8e-149
     Identities = 269/323 (83%), Positives = 288/323 (89%), Gaps = 1/323 (0%)

gi|6911703|emb|CAB72138.1|  BphR protein [Cupriavidus necator]
     Length=313
     Score =  526 bits (1356),  Expect = 3e-148
     Identities = 267/311 (85%), Positives = 284/311 (91%), Gaps = 1/311 (0%)

gi|1213585|dbj|BAA07613.1|  regulatory protein bphR [Pseudomonas sp.]
     Length=314
     Score =  520 bits (1339),  Expect = 3e-146
     Identities = 266/311 (85%), Positives = 283/311 (90%), Gaps = 0/311 (0%)
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription].
             CD-Length = 297 residues, only  76.1% aligned
             Score = 97.0 bits (240), Expect = 3e-21

pfam03466, LysR_substrate, LysR substrate binding domain. The structure of this domain is
known and is similar to the periplasmic binding proteins..
             CD-Length = 209 residues,  98.1% aligned
             Score = 77.3 bits (190), Expect = 2e-15
Genomic Context:
Comment:
ReferenceID:12062
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29304
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6092

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198376 emb|CAB72138.1| (AJ011922) BphR protein [Ralstonia eutropha] 334 79.94 85.02 24 1358.0
198377 dbj|BAA07613.1| (D38633) regulatory protein bphR [Pseudomonas sp.] 334 79.64 84.73 23 1339.0
198375 emb|CAD61148.1| (AJ536756) transcription regulator [Ralstonia oxalatica] 351 76.92 82.62 24 1354.0
198378 emb|CAD16295.1| (AL646070) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] 334 70.95 78.14 23 1187.0
198379 emb|CAE15166.1| (BX571868) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 332 48.19 66.26 36 841.0
GC ORFID: 49094How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2261926Stop: 2262921
Length: 996
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCTCTAGCATTAACCGAGAAGCAAGTGCTATGTCGGCTCGGAGGGAATGAATATTCTATGGAGTTGAGA
CACCTGAAGTATTTTCTCGCCGTAGCTGAGGAGCTTCGCTTCGCCCGTGCCGCAGAGAAGCTGCACATTGAG
CAATCGCCCTTGTCCCGAGCCATCAAGGAACTGGAAGAAGAACTGGGTGTTGTGCTGTTTGCCCGCACCACC
CGCAGCACCAGGCTAACCCGCGCTGGCAAGTTGTTCTTGGAGCACGTTCGTCGCGTACTCGCTGCTGTGGAA
CAGGCTCGCGAGAGCGTCAAGGCTGCGGCCAACGGCTTTCACGGGCAGTTGCGCGTGGCGTTGTCCGATGGC
ATCACGCCATCGCGTCTATCTGCCTTGCTCGTACTTTGTCGCCAGGAAGAACCTGAGGTAGAAATCCGATTC
TTCGAGGTGCCCCTGTCACAGCAGATCAAAGGGCTTCATAGCGATCTGTACGACGTGGGATTCGCCCAGTCC
AACGAGGTTGGTGATGGCATCGTCACCGTACCTGCCTGGAGCGATACGCTGATGGTCGCGGTTCCTGGCCGG
CATCCGCTGCTGGCCCACAAACGCATCCCCTTGGATGAGCTGCTGCGCTACCCATTGGTCTTGTGCGATCCG
CAAGTGTGCGAAGGCCACGCCAAGCATGTCGAACGAGTGCTTCGCCATACTGAGATGGAGCCTTTGATTGCA
GAACGTGTTGCTTCTTGCGACCTGATGATGGCGCTGGTATCGGCTGGTTTCGCGCTCGGGCTGGCCGGCGCC
GCACACATTGCCGCCAGCCGTGAGCCAGGTGTCGTGGCCCGTCCGCTGGCGCAGCGCGTGCCACCGTTGACG
ACGTACTTGCTTCATCTTGACGGTGATCTATCCGACGAACTGGCAAGATTCATTGAGCGCGTACAGACCATC
GAATCTCTGGAACCCCCAAGGCCGATACGAGGTCGAAATCCCGATGCTTCGGAGGAATGA