Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: emb|CAD61148.1| (AJ536756) transcription regulator [Ralstonia oxalatica]
Identities = 269/323 (83%), Positives = 288/323 (89%), Gaps = 1/323 (0%)
Sequence:
ATGGCTCTAGCATTAACCGAGAAGCAAGTGCTATGTCGGCTCGGAGGGAATGAATATTCTATGGAGTTGAGA
CACCTGAAGTATTTTCTCGCCGTAGCTGAGGAGCTTCGCTTCGCCCGTGCCGCAGAGAAGCTGCACATTGAG
CAATCGCCCTTGTCCCGAGCCATCAAGGAACTGGAAGAAGAACTGGGTGTTGTGCTGTTTGCCCGCACCACC
CGCAGCACCAGGCTAACCCGCGCTGGCAAGTTGTTCTTGGAGCACGTTCGTCGCGTACTCGCTGCTGTGGAA
CAGGCTCGCGAGAGCGTCAAGGCTGCGGCCAACGGCTTTCACGGGCAGTTGCGCGTGGCGTTGTCCGATGGC
ATCACGCCATCGCGTCTATCTGCCTTGCTCGTACTTTGTCGCCAGGAAGAACCTGAGGTAGAAATCCGATTC
TTCGAGGTGCCCCTGTCACAGCAGATCAAAGGGCTTCATAGCGATCTGTACGACGTGGGATTCGCCCAGTCC
AACGAGGTTGGTGATGGCATCGTCACCGTACCTGCCTGGAGCGATACGCTGATGGTCGCGGTTCCTGGCCGG
CATCCGCTGCTGGCCCACAAACGCATCCCCTTGGATGAGCTGCTGCGCTACCCATTGGTCTTGTGCGATCCG
CAAGTGTGCGAAGGCCACGCCAAGCATGTCGAACGAGTGCTTCGCCATACTGAGATGGAGCCTTTGATTGCA
GAACGTGTTGCTTCTTGCGACCTGATGATGGCGCTGGTATCGGCTGGTTTCGCGCTCGGGCTGGCCGGCGCC
GCACACATTGCCGCCAGCCGTGAGCCAGGTGTCGTGGCCCGTCCGCTGGCGCAGCGCGTGCCACCGTTGACG
ACGTACTTGCTTCATCTTGACGGTGATCTATCCGACGAACTGGCAAGATTCATTGAGCGCGTACAGACCATC
GAATCTCTGGAACCCCCAAGGCCGATACGAGGTCGAAATCCCGATGCTTCGGAGGAATGA
Translation:
MALALTEKQVLCRLGGNEYSMELRHLKYFLAVAEELRFARAAEKLHIEQSPLSRAIKELEEELGVVLFARTT
RSTRLTRAGKLFLEHVRRVLAAVEQARESVKAAANGFHGQLRVALSDGITPSRLSALLVLCRQEEPEVEIRF
FEVPLSQQIKGLHSDLYDVGFAQSNEVGDGIVTVPAWSDTLMVAVPGRHPLLAHKRIPLDELLRYPLVLCDP
QVCEGHAKHVERVLRHTEMEPLIAERVASCDLMMALVSAGFALGLAGAAHIAASREPGVVARPLAQRVPPLT
TYLLHLDGDLSDELARFIERVQTIESLEPPRPIRGRNPDASEE*
AnnotationID:6093 GeneID:6092
Modification Date/Time:
2005-09-30 14:02:51
GeneProduct: putative transcriptional regulator
Cell Localization Confidence Code: 5
Functional Category: (25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: gi|27817721| emb|CAD61148.1| transcription regulator [Cupriavidus oxalaticus]
Length=347
Score = 528 bits (1361), Expect = 8e-149
Identities = 269/323 (83%), Positives = 288/323 (89%), Gaps = 1/323 (0%)
gi|6911703| emb|CAB72138.1| BphR protein [Cupriavidus necator]
Length=313
Score = 526 bits (1356), Expect = 3e-148
Identities = 267/311 (85%), Positives = 284/311 (91%), Gaps = 1/311 (0%)
gi|1213585| dbj|BAA07613.1| regulatory protein bphR [Pseudomonas sp.]
Length=314
Score = 520 bits (1339), Expect = 3e-146
Identities = 266/311 (85%), Positives = 283/311 (90%), Gaps = 0/311 (0%)
Structural Features: COG0583 , LysR, Transcriptional regulator [Transcription].
CD-Length = 297 residues, only 76.1% aligned
Score = 97.0 bits (240), Expect = 3e-21
pfam03466 , LysR_substrate, LysR substrate binding domain. The structure of this domain is
known and is similar to the periplasmic binding proteins..
CD-Length = 209 residues, 98.1% aligned
Score = 77.3 bits (190), Expect = 2e-15