ViewGene
Locus Name:
GeneID:
Location:

GeneID:6090
TrivialName: PA14_30990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30990
PAO1 Ortholog Locus:
Sequence Length:669
Protein Length:222
Start: 2693151
Stop: 2692483
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA72439.1| (L31491) ORF2; putative [Plasmid pTOM9]
Identities = 91/246 (36%), Positives = 124/246 (50%), Gaps = 38/246 (15%)
Sequence:
ATGTCCTACATTCCTGCTCCGCAATCGCTTCCCAGCACCGCCCGCCTGCTCAAGGCCACCGGGCTGGCCATC
GCCGTGGCATCCGTCCTGCTGGTGACGGTCGTGCTTCCCGCCGAATACGGCATCGACCCGACCGGCATCGGC
ACCCGGCTGGGGTTGGACGTGCTGGGTGCCAAGGCCGAAACCAAAGCCGCGCAAGCACCGGCATTGGCCGCG
CCCACTTCTGACAAGACAGCGGCAACGCTGCCGGCAACTGAAGCCGAACTGGAAGCCAAGGCCATTGCGGCC
TTCGGCAAACGTTCGCTGGGGCAATCGCTGGACGTGCGTGCCATGTCGCCCAGCGCCAATGCCGTGCGCAGC
GACACCCTCAGCCTGACGCTGGAGCCGGGCAAGGGTGCGGAGGTGAAGATGCACCTCAAGCAAGGTGAGGGC
GTGGTCTTCCAGTGGAAGGCCTCGAACGCTGTCCTGCTCGACATGCACGGCGAACGTCCGAACGCGAAGGGC
GAGTGGACGAGCTATTCCATCGAGCCGGCGCAAAACGAGGCTCGCGGCACTTTCGTGGCCCCGTTCGAGGGA
AGCCACGGCTGGTACTGGAAGAACGAGAACGATGAACCGGTCACGGTCGAAGTGGCCGTGACCGGCTTCCAG
CCCGATTTGCATCAACCCTGA
Translation:
MSYIPAPQSLPSTARLLKATGLAIAVASVLLVTVVLPAEYGIDPTGIGTRLGLDVLGAKAETKAAQAPALAA
PTSDKTAATLPATEAELEAKAIAAFGKRSLGQSLDVRAMSPSANAVRSDTLSLTLEPGKGAEVKMHLKQGEG
VVFQWKASNAVLLDMHGERPNAKGEWTSYSIEPAQNEARGTFVAPFEGSHGWYWKNENDEPVTVEVAVTGFQ
PDLHQP*
AnnotationID:6091GeneID:6090
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 15:03:55
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|48849158|ref|ZP_00303402.1|  hypothetical protein Saro02002421 [Novosphingobium 
aromaticivorans DSM 12444]
     Length=208
     Score =  140 bits (352),  Expect = 4e-32
     Identities = 86/204 (42%), Positives = 113/204 (55%), Gaps = 26/204 (12%)

gi|468278|gb|AAA72439.1|  ORF2; putative [Plasmid pTOM9]
     Length=256
     Score =  129 bits (325),  Expect = 5e-29
     Identities = 91/246 (36%), Positives = 124/246 (50%), Gaps = 38/246 (15%)







 
Structural Features:






   
Genomic Context:






   
Comment:
protein expressed


















    ReferenceID:12059




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29300




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49092How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2260775Stop: 2261443

          
Length: 669


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTCCTACATTCCTGCTCCGCAATCGCTTCCCAGCACCGCCCGCCTGCTCAAGGCCACCGGGCTGGCCATC 
GCCGTGGCATCCGTCCTGCTGGTGACGGTCGTGCTTCCCGCCGAATACGGCATCGACCCGACCGGCATCGGC 
ACCCGGCTGGGGTTGGACGTGCTGGGTGCCAAGGCCGAAACCAAAGCCGCGCAAGCACCGGCATTGGCCGCG 
CCCACTTCTGACAAGACAGCGGCAACGCTGCCGGCAACTGAAGCCGAACTGGAAGCCAAGGCCATTGCGGCC 
TTCGGCAAACGTTCGCTGGGGCAATCGCTGGACGTGCGTGCCATGTCGCCCAGCGCCAATGCCGTGCGCAGC 
GACACCCTCAGCCTGACGCTGGAGCCGGGCAAGGGTGCGGAGGTGAAGATGCACCTCAAGCAAGGTGAGGGC 
GTGGTCTTCCAGTGGAAGGCCTCGAACGCTGTCCTGCTCGACATGCACGGCGAACGTCCGAACGCGAAGGGC 
GAGTGGACGAGCTATTCCATCGAGCCGGCGCAAAACGAGGCTCGCGGCACTTTCGTGGCCCCGTTCGAGGGA 
AGCCACGGCTGGTACTGGAAGAACGAGAACGATGAACCGGTCACGGTCGAAGTGGCCGTGACCGGCTTCCAG 
CCCGATTTGCATCAACCCTGA