ViewGene
Locus Name:
GeneID:
Location:

GeneID:609
TrivialName: PA14_38200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38200
PAO1 Ortholog Locus:PA2035
Sequence Length:1659
Protein Length:552
Start: 3408055
Stop: 3409713
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05423.1|AE004629_12 (AE004629) probable decarboxylase [Pseudomonas aeruginosa PAO1]
Identities = 547/552 (99%), Positives = 550/552 (99%)
Sequence:
ATGTCCGACTCCCTTCCCCAGCGCAACGGCGGGCAGATCCTGGTAGAGGCATTGCGGCGCAATGCCGTCGAT
ACCGTCTACTGCATCCCCGGGGAAAGCTACCTGCCGGTGCTCGACGCGCTGTACGACGCCGACGGCATCCGC
ACCATCGTCACCCGCCACGAGGGTGCCGCCTCGAACATGGCCGATGCCTACGGCAAGCTGACCGGCCGACCA
GGCATCTGCTTCGTCACCCGCGGCCCCGGTGCCACCCATGCGGCGAATGGCGTGCACACGGCGCAGCAGGAC
TCGACGCCGATGATCCTGTTCGTCGGCCAGGTGGAAAGCGCCTTCAAGGGCCGCGAGGCATTCCAGGAAGTC
GACTACGTGCAGATGTTCTCGGGCCTGGCCAAGTGGGCCGTGGAAATCGACCGTATCGAACGCATCCCGGAG
CTCGTCGGCCGCGCCTTCAGCGTCGCCACCTCGGGCCGACCGGGGCCGGTCGTGGTCGCCCTGCCCGAGGAA
ATCCTCTTCGGTTCCGCGCAGGTCGCCGATGCGCCGGTGCCAAGGGTGCTTCCGGGGCGGCCGGGCGCCACG
GCGATGGCGGAACTGCGCGAACTGCTGGCGAACGCCAGGCGCCCCCTGCTGGTACTTGGCGGCAGCGGCTGG
GACAGCGCCGCCAGGAAACGGCTAGGCGCCTTCGTCGAGGCCAATGGCCTGCCGGTGGCCACATCGTTCCGT
CGCCAGGACCTGTTCGACAACCGCGACCCGCACTACGCCGGGCAACTGGGCTTCGGCGCGGCGCCGGCGCTA
TTGGAGCGGCTGCGCCAGGCCGACCTGCTGCTGGTGGTCGGGGCGCGCCTGGGCGAAACGCCGAGCGCTGGC
TACAGCCTGGTGCGTAGTCCGGCCCCCGCGCAGACGCTGATCCACGTGCATCCGGACAGCGCGGAATTGAAC
CGCGTCTACCTGGCGCGACTGCCGATCCAGGCCACCCCGTGTGCCTTCGCCGAGGCCCTGGCCGACCTCGCT
CCGTTGCCCTCGAGCACCTGGCAGGACTGGCGCGAAGCCGCCCATGCCGACTACCTGGCCTACTCGACCCCG
GCCGCGAGCGACCCCGCCATCCAGGGCGTCGACCTGGCGTCCGTGGTCGCGTACCTCAGCGAAAACCTGCCG
GACGACGCGGTGATCGCCAACGGTGCCGGCAATTATGCCGTCTGGGTGCATCGCTTCTACCGCTATCGCCAG
GCCCGCACGCAGTTGGCGCCGACCAACGGCGCCATGGGCTACGGCCTGCCCGCCGCGATCGCCGCCAGCCTA
CGCGATCCGCAGCGCAGCGTGGTGTGCTTCGCCGGCGACGGCTGTTTCATGATGTATCCGCAGGAGCTGGCG
ACCGCCGCGCAGTTCGGCGCGACGCCGGTGGTGATCGTGGTCAACAACGGCATGCTCGGCACCATCCGCATG
CATCAGGAACGCGAATATCCCGGGCGGGTATCCGCCACCCGCCTGGACAACCCCGACTTCGTCGCCCTGGCG
CGAGCCTTCGGCGCCCACGCCGAACGAGTGGAATGCAGCGCCGACTTCCCCGCCGCGTTCCGCCGCGCCCGC
GAAAGCGGACGCCCGGCGCTGCTGGAGCTGCTGACCGACCCACGCCAGATCACGCCGCAGGCGCGCCTCGCC
TGA
Translation:
MSDSLPQRNGGQILVEALRRNAVDTVYCIPGESYLPVLDALYDADGIRTIVTRHEGAASNMADAYGKLTGRP
GICFVTRGPGATHAANGVHTAQQDSTPMILFVGQVESAFKGREAFQEVDYVQMFSGLAKWAVEIDRIERIPE
LVGRAFSVATSGRPGPVVVALPEEILFGSAQVADAPVPRVLPGRPGATAMAELRELLANARRPLLVLGGSGW
DSAARKRLGAFVEANGLPVATSFRRQDLFDNRDPHYAGQLGFGAAPALLERLRQADLLLVVGARLGETPSAG
YSLVRSPAPAQTLIHVHPDSAELNRVYLARLPIQATPCAFAEALADLAPLPSSTWQDWREAAHADYLAYSTP
AASDPAIQGVDLASVVAYLSENLPDDAVIANGAGNYAVWVHRFYRYRQARTQLAPTNGAMGYGLPAAIAASL
RDPQRSVVCFAGDGCFMMYPQELATAAQFGATPVVIVVNNGMLGTIRMHQEREYPGRVSATRLDNPDFVALA
RAFGAHAERVECSADFPAAFRRARESGRPALLELLTDPRQITPQARLA*
AnnotationID:618GeneID:609
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:06
Gene Name:
Confidence Code:3
GeneProduct:putative phosphonopyruvate decarboxylase
Cell Localization:()
Synonyms:ilvG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative acetolactate synthase large subunit
Functional Category Confidence Code:5
COGs:COG0028
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL53593.1| (AE009672) ACETOLACTATE SYNTHASE LARGE SUBUNIT [Brucella melitensis
           16M]
          Length = 564

 Score =  613 bits (1581), Expect = e-175
 Identities = 311/547 (56%), Positives = 388/547 (70%), Gaps = 6/547 (1%)

>emb|CAE42145.1| (BX640416) acetolactate synthase large subunit [Bordetella
           pertussis]
          Length = 569

 Score =  545 bits (1403), Expect = e-154
 Identities = 290/549 (52%), Positives = 368/549 (67%), Gaps = 8/549 (1%)








 
Structural Features:
COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes 
[acetolactate synthase, pyruvate dehydrogenase (cytochrome),
glyoxylate carboligase, phosphonopyruvate decarboxylase]
[Amino acid transport and metabolism / Coenzyme metabolism]
CD-Length = 550 residues,  97.6% aligned
Score =  513 bits (1322), Expect = 2e-146
Identities = 219/545 (40%), Positives = 293/545 (53%), Gaps = 12/545 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1221




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18363




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32667




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:609_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:609
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1039
                           PA2035_tr
                           translation of PA2035
                           552
                           99.09
                           99.63
                           0
                           2823.0
     

     
     
40486
                           gb|AAG05423.1|AE004629_12
                           (AE004629) probable decarboxylase [Pseudomonas aeruginosa PAO1]
                           552
                           99.09
                           99.63
                           0
                           2823.0
     

     
     
40490
                           emb|CAE43716.1|
                           (BX640421) putative acetolactate synthase large subunit [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           558
                           58.78
                           69.35
                           11
                           1583.0
     

     
     
40489
                           emb|CAE31422.1|
                           (BX640439) putative acetolactate synthase large subunit [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           558
                           58.78
                           69.35
                           11
                           1584.0
     

     
     
40491
                           emb|CAE40238.1|
                           (BX640425) putative acetolactate synthase large subunit [Bordetella parapertussis]
                           570
                           57.01
                           67.36
                           23
                           1564.0
     

     






      

          
GC ORFID: 43611How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2035Glimmer Score: 

          
Start: 1545855Stop: 1544197

          
Length: 1659


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2035 translation of PA2035Homolog Bit Score 1092.0

          
Other Homologs:  t_PA2035 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGACTCCCTTCCCCAGCGCAACGGCGGGCAGATCCTGGTAGAGGCATTGCGGCGCAATGCCGTCGAT 
ACCGTCTACTGCATCCCCGGGGAAAGCTACCTGCCGGTGCTCGACGCGCTGTACGACGCCGACGGCATCCGC 
ACCATCGTCACCCGCCACGAGGGTGCCGCCTCGAACATGGCCGATGCCTACGGCAAGCTGACCGGCCGACCA 
GGCATCTGCTTCGTCACCCGCGGCCCCGGTGCCACCCATGCGGCGAATGGCGTGCACACGGCGCAGCAGGAC 
TCGACGCCGATGATCCTGTTCGTCGGCCAGGTGGAAAGCGCCTTCAAGGGCCGCGAGGCATTCCAGGAAGTC 
GACTACGTGCAGATGTTCTCGGGCCTGGCCAAGTGGGCCGTGGAAATCGACCGTATCGAACGCATCCCGGAG 
CTCGTCGGCCGCGCCTTCAGCGTCGCCACCTCGGGCCGACCGGGGCCGGTCGTGGTCGCCCTGCCCGAGGAA 
ATCCTCTTCGGTTCCGCGCAGGTCGCCGATGCGCCGGTGCCAAGGGTGCTTCCGGGGCGGCCGGGCGCCACG 
GCGATGGCGGAACTGCGCGAACTGCTGGCGAACGCCAGGCGCCCCCTGCTGGTACTTGGCGGCAGCGGCTGG 
GACAGCGCCGCCAGGAAACGGCTAGGCGCCTTCGTCGAGGCCAATGGCCTGCCGGTGGCCACATCGTTCCGT 
CGCCAGGACCTGTTCGACAACCGCGACCCGCACTACGCCGGGCAACTGGGCTTCGGCGCGGCGCCGGCGCTA 
TTGGAGCGGCTGCGCCAGGCCGACCTGCTGCTGGTGGTCGGGGCGCGCCTGGGCGAAACGCCGAGCGCTGGC 
TACAGCCTGGTGCGTAGTCCGGCCCCCGCGCAGACGCTGATCCACGTGCATCCGGACAGCGCGGAATTGAAC 
CGCGTCTACCTGGCGCGACTGCCGATCCAGGCCACCCCGTGTGCCTTCGCCGAGGCCCTGGCCGACCTCGCT 
CCGTTGCCCTCGAGCACCTGGCAGGACTGGCGCGAAGCCGCCCATGCCGACTACCTGGCCTACTCGACCCCG 
GCCGCGAGCGACCCCGCCATCCAGGGCGTCGACCTGGCGTCCGTGGTCGCGTACCTCAGCGAAAACCTGCCG 
GACGACGCGGTGATCGCCAACGGTGCCGGCAATTATGCCGTCTGGGTGCATCGCTTCTACCGCTATCGCCAG 
GCCCGCACGCAGTTGGCGCCGACCAACGGCGCCATGGGCTACGGCCTGCCCGCCGCGATCGCCGCCAGCCTA 
CGCGATCCGCAGCGCAGCGTGGTGTGCTTCGCCGGCGACGGCTGTTTCATGATGTATCCGCAGGAGCTGGCG 
ACCGCCGCGCAGTTCGGCGCGACGCCGGTGGTGATCGTGGTCAACAACGGCATGCTCGGCACCATCCGCATG 
CATCAGGAACGCGAATATCCCGGGCGGGTATCCGCCACCCGCCTGGACAACCCCGACTTCGTCGCCCTGGCG 
CGAGCCTTCGGCGCCCACGCCGAACGAGTGGAATGCAGCGCCGACTTCCCCGCCGCGTTCCGCCGCGCCCGC 
GAAAGCGGACGCCCGGCGCTGCTGGAGCTGCTGACCGACCCACGCCAGATCACGCCGCAGGCGCGCCTCGCC 
TGA