ViewGene

Locus Name:
GeneID:
Location:

GeneID:6089
TrivialName: PA14_31000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31000
PAO1 Ortholog Locus:
Sequence Length:744
Protein Length:247
Start: 2693907
Stop: 2693164
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA72438.1| (L31491) ORF1; putative [Plasmid pTOM9]
Identities = 149/242 (61%), Positives = 194/242 (80%), Gaps = 5/242 (2%)
Sequence:
GTGAGCCGGTGCCCATTCCCATTTCCCTTGGAGGTTCCCTTGTTGTCACGCATGTTCCGTTTCCCCGACCGA
AGCCAATGGCTGATGGTGCTGGTGCTGTCCCTGTTGCCACTGTGGGCGTTTGCCCACGGTGTCACCGGCGAT
GATCAGGCGTTTCTTGAGCAGAACACCGGCCGTAATTTGCTGGTGTTCACCTACCTCGGGGCCAAGCACATG
GTCACTGGCTACGACCATCTGCTGTTCCTGCTGGGCGTGGTGTTCTTCCTGTACCGGATGCGCGACGTCGGC
ACCTACGTCACCCTGTTCGCGGTCGGCCACAGCGTCACCTTGTTGCTGGGCGTGCTGGGCGGGTTCCACGTC
AACGCCTATCTCGTCGATGCCATCATCGGCCTGTCGGTGGTTTACAAGGCGCTGGACAACCTCGGTGCGTTC
AAGCGTTGGTTCGGCTTCCAACCCAACACCAAGGCCGCCGTGCTGATCTTCGGTTTCTTCCACGGTTTCGGT
CTGGCGACCAAGTTGCAGGATTTCGCGCTGTCGCGTGATGGTCTGGTGCCCAACATGCTCGCGTTCAACGTC
GGCGTGGAGTTGGGCCAGTTGCTGGCCCTGGCCGGCATCCTGATCGTGATGGGTTTCTGGCGGCGCACTGCC
GCTTTCCCGCGCCAGGCCTTCGCAGCCAACACCGTCCTGATGACCGCCGGCTTTGTGCTGATCGGCTACCAA
CTCACCGGCTATTTCGTTTCCTGA
Translation:
MSRCPFPFPLEVPLLSRMFRFPDRSQWLMVLVLSLLPLWAFAHGVTGDDQAFLEQNTGRNLLVFTYLGAKHM
VTGYDHLLFLLGVVFFLYRMRDVGTYVTLFAVGHSVTLLLGVLGGFHVNAYLVDAIIGLSVVYKALDNLGAF
KRWFGFQPNTKAAVLIFGFFHGFGLATKLQDFALSRDGLVPNMLAFNVGVELGQLLALAGILIVMGFWRRTA
AFPRQAFAANTVLMTAGFVLIGYQLTGYFVS*
AnnotationID:6090GeneID:6089
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 15:03:15
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|468277|gb|AAA72438.1|  ORF1; putative [Plasmid pTOM9]
     Length=295
     Score =  305 bits (781),  Expect = 9e-82
     Identities = 149/242 (61%), Positives = 194/242 (80%), Gaps = 5/242 (2%)

gi|71161319|gb|EAO11115.1|  conserved hypothetical protein [Psychrobacter cryohalolentis K5]
     Length=246
     Score =  291 bits (746),  Expect = 1e-77
     Identities = 133/208 (63%), Positives = 174/208 (83%), Gaps = 0/208 (0%)

gi|48849159|ref|ZP_00303403.1|  hypothetical protein Saro02002422 [Novosphingobium 
aromaticivorans DSM 12444]
     Length=240
     Score =  291 bits (745),  Expect = 1e-77
     Identities = 145/215 (67%), Positives = 169/215 (78%), Gaps = 0/215 (0%)

gi|30138445|emb|CAD84455.1|  putative ORF1 [Plasmid pTOM9] [Nitrosomonas europaea ATCC 19718]
     Length=251
     Score =  269 bits (688),  Expect = 5e-71
     Identities = 123/205 (60%), Positives = 163/205 (79%), Gaps = 0/205 (0%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:15921
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29298
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6089

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198372 gb|AAA72438.1| (L31491) ORF1; putative [Plasmid pTOM9] 296 51.35 66.55 50 775.0
198373 emb|CAD84455.1| (BX321857) putative ORF1 [Plasmid pTOM9] [Nitrosomonas europaea ATCC 19718] 256 50.00 69.53 14 677.0
198374 gb|AAN05251.1| (AF416331) RC178 [Ruegeria sp. PR1b] 295 46.10 60.67 58 673.0
GC ORFID: 49091How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2260019Stop: 2260762
Length: 744
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGAGCCGGTGCCCATTCCCATTTCCCTTGGAGGTTCCCTTGTTGTCACGCATGTTCCGTTTCCCCGACCGA
AGCCAATGGCTGATGGTGCTGGTGCTGTCCCTGTTGCCACTGTGGGCGTTTGCCCACGGTGTCACCGGCGAT
GATCAGGCGTTTCTTGAGCAGAACACCGGCCGTAATTTGCTGGTGTTCACCTACCTCGGGGCCAAGCACATG
GTCACTGGCTACGACCATCTGCTGTTCCTGCTGGGCGTGGTGTTCTTCCTGTACCGGATGCGCGACGTCGGC
ACCTACGTCACCCTGTTCGCGGTCGGCCACAGCGTCACCTTGTTGCTGGGCGTGCTGGGCGGGTTCCACGTC
AACGCCTATCTCGTCGATGCCATCATCGGCCTGTCGGTGGTTTACAAGGCGCTGGACAACCTCGGTGCGTTC
AAGCGTTGGTTCGGCTTCCAACCCAACACCAAGGCCGCCGTGCTGATCTTCGGTTTCTTCCACGGTTTCGGT
CTGGCGACCAAGTTGCAGGATTTCGCGCTGTCGCGTGATGGTCTGGTGCCCAACATGCTCGCGTTCAACGTC
GGCGTGGAGTTGGGCCAGTTGCTGGCCCTGGCCGGCATCCTGATCGTGATGGGTTTCTGGCGGCGCACTGCC
GCTTTCCCGCGCCAGGCCTTCGCAGCCAACACCGTCCTGATGACCGCCGGCTTTGTGCTGATCGGCTACCAA
CTCACCGGCTATTTCGTTTCCTGA