ViewGene
Locus Name:
GeneID:
Location:

GeneID:6087
TrivialName: PA14_31030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31030
PAO1 Ortholog Locus:
Sequence Length:1230
Protein Length:409
Start: 2698281
Stop: 2697052
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK24360.1| (AE005908) cation efflux system protein, putative [Caulobacter crescentus CB15]
Identities = 200/408 (49%), Positives = 267/408 (65%), Gaps = 5/408 (1%)
Sequence:
ATGATTCGCATTCTTTCCCTGCTGCTCCTTTGCGTGTTCGCCGCTGCGTGCAGCCCTGGTGGCGACAAGCCC
AAAGAGGAGGCCAGCGCCCAAGCCAGCGGAAGCTATGAGCGTGGGCCAAACAATGGCCGACTACTCCGTGAT
GGAGACTTCGCCCTCGAAGTCACCATCTACGAAACCAATGCGCCCCCGCACTACAGGCTATTTGCCTACCGC
GACGGCAAGCCTGTCGCCCCCGCCGATGTTGTTGCGACCATCAAGCTCTCCCGCCTGGATGGCGAGGTCAAC
CAATTCACGTTCACGCCGGAGAACAACTATCTAGTCGGCAGTGGCGAAGTGACCGAGCCGCATTCGTTCGAC
GTGGCCGTATCCGCCGAGCATGCCGGAAAGAAGTCCACATGGTCTTACGAGTCCTACGAGGGGCGCGTCAGC
ATTCCTGCCAGTATCGCCAAGGATGCCGGCATCAAGACCGAATCGGCGGGGCCGGCAGTCATCCGAGACGTT
GTGCGACTAATGGGAACTGTTGTTCTGGATGCCGACAGGCACGCAGCGGTTCGTGCGCGCTTCCCCGGCATC
GTGCGCTCTGTGAACGTGCAGCAAGGCGAGCGCGTCCGCCGCGGCCAGACGCTGGCCGTCGTCGAGGGCAAT
GACAGTATGCGTACCTACCCGATCACGGCGCCGTTCGATGGCGTCGTGCTCGCGCGCAATACGAATGTGGGC
GACGTGGCCGAAGCTGGTGCGCTGTTCGAGCTGGCCGACCCGTCCAATGTATGGATCGACCTGCGTGCCATC
GGCACAGACGCCGAAGTTCTACAGCCAGGCCAAGCCGTGCGAATCCGGTCAGCGACCGGAAAGACCGAAGCC
AGTGGAAAGATTCAACGGCTGTTGCCGGTGGCCGGCAGCGGCCAGAGCGTCATTGCCCGCGTCAGCATCCCG
AACCCGGAGGGGCGCTGGCGTCCCGGTATGACCGTGGCCGCCGAGGTCACAGTAGGCACGCGCAACGTATCG
CTTGCGGTGAAGGAGTCGGGATTGCAGCGATTCCGCGACTTCACCGTGGTATTCGCACAGGTCGGCGAAACC
TACGAAGTGCGAATGCTTGAGCTTGGGGAGCGGGATGGCGAATACGTTGAAGTGACCGGCGGACTCAAGCCC
GGCACGAACTACGTGGCCGAGCAAAGTTTCCTGATACGCCAAGACATCGAAAAGTCTGGCGCCAGCCACGAT
CACTGA
Translation:
MIRILSLLLLCVFAAACSPGGDKPKEEASAQASGSYERGPNNGRLLRDGDFALEVTIYETNAPPHYRLFAYR
DGKPVAPADVVATIKLSRLDGEVNQFTFTPENNYLVGSGEVTEPHSFDVAVSAEHAGKKSTWSYESYEGRVS
IPASIAKDAGIKTESAGPAVIRDVVRLMGTVVLDADRHAAVRARFPGIVRSVNVQQGERVRRGQTLAVVEGN
DSMRTYPITAPFDGVVLARNTNVGDVAEAGALFELADPSNVWIDLRAIGTDAEVLQPGQAVRIRSATGKTEA
SGKIQRLLPVAGSGQSVIARVSIPNPEGRWRPGMTVAAEVTVGTRNVSLAVKESGLQRFRDFTVVFAQVGET
YEVRMLELGERDGEYVEVTGGLKPGTNYVAEQSFLIRQDIEKSGASHDH*
AnnotationID:6088GeneID:6087
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 15:03:50
Gene Name:
Confidence Code:3
GeneProduct:putative cation efflux system protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|13423924|gb|AAK24360.1|  cation efflux system protein, putative [Caulobacter crescentus CB15]
     Length=420
     Score =  380 bits (976),  Expect = 5e-104
     Identities = 200/408 (49%), Positives = 267/408 (65%), Gaps = 5/408 (1%)

gi|67088285|gb|EAM07751.1|  Secretion protein HlyD [Azotobacter vinelandii AvOP]
     Length=419
     Score =  316 bits (809),  Expect = 1e-84
     Identities = 176/414 (42%), Positives = 242/414 (58%), Gaps = 9/414 (2%)

gi|21115305|gb|AAM43258.1|  cation efflux system protein [Xanthomonas campestris 
pv. campestris str. ATCC 33913]
     Length=493
     Score =  302 bits (774),  Expect = 1e-80
     Identities = 178/414 (42%), Positives = 236/414 (57%), Gaps = 14/414 (3%)

gi|21244878|ref|NP_644460.1|  cation efflux system protein [Xanthomonas axonopodis pv. citri str. 306]
     Length=423
     Score =  301 bits (770),  Expect = 4e-80
     Identities = 180/421 (42%), Positives = 239/421 (56%), Gaps = 17/421 (4%)






 
Structural Features:
COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane].
             CD-Length = 372 residues, only  61.8% aligned
             Score = 74.4 bits (181), Expect = 2e-14








   
Genomic Context:






   
Comment:
protein expressed


















    ReferenceID:12054




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29294




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6087
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198369
                           gb|AAK24360.1|
                           (AE005908) cation efflux system protein, putative [Caulobacter crescentus CB15]
                           420
                           47.61
                           64.04
                           11
                           982.0
     

     
     
198371
                           gb|AAM38996.1|
                           (AE012066) cation efflux system protein [Xanthomonas axonopodis pv. citri str. 306]
                           425
                           42.58
                           56.70
                           18
                           789.0
     

     
     
198370
                           gb|AAM43258.1|
                           (AE012525) cation efflux system protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           499
                           36.07
                           48.29
                           96
                           788.0
     

     






      

          
GC ORFID: 49089How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2255645Stop: 2256874

          
Length: 1230


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGATTCGCATTCTTTCCCTGCTGCTCCTTTGCGTGTTCGCCGCTGCGTGCAGCCCTGGTGGCGACAAGCCC 
AAAGAGGAGGCCAGCGCCCAAGCCAGCGGAAGCTATGAGCGTGGGCCAAACAATGGCCGACTACTCCGTGAT 
GGAGACTTCGCCCTCGAAGTCACCATCTACGAAACCAATGCGCCCCCGCACTACAGGCTATTTGCCTACCGC 
GACGGCAAGCCTGTCGCCCCCGCCGATGTTGTTGCGACCATCAAGCTCTCCCGCCTGGATGGCGAGGTCAAC 
CAATTCACGTTCACGCCGGAGAACAACTATCTAGTCGGCAGTGGCGAAGTGACCGAGCCGCATTCGTTCGAC 
GTGGCCGTATCCGCCGAGCATGCCGGAAAGAAGTCCACATGGTCTTACGAGTCCTACGAGGGGCGCGTCAGC 
ATTCCTGCCAGTATCGCCAAGGATGCCGGCATCAAGACCGAATCGGCGGGGCCGGCAGTCATCCGAGACGTT 
GTGCGACTAATGGGAACTGTTGTTCTGGATGCCGACAGGCACGCAGCGGTTCGTGCGCGCTTCCCCGGCATC 
GTGCGCTCTGTGAACGTGCAGCAAGGCGAGCGCGTCCGCCGCGGCCAGACGCTGGCCGTCGTCGAGGGCAAT 
GACAGTATGCGTACCTACCCGATCACGGCGCCGTTCGATGGCGTCGTGCTCGCGCGCAATACGAATGTGGGC 
GACGTGGCCGAAGCTGGTGCGCTGTTCGAGCTGGCCGACCCGTCCAATGTATGGATCGACCTGCGTGCCATC 
GGCACAGACGCCGAAGTTCTACAGCCAGGCCAAGCCGTGCGAATCCGGTCAGCGACCGGAAAGACCGAAGCC 
AGTGGAAAGATTCAACGGCTGTTGCCGGTGGCCGGCAGCGGCCAGAGCGTCATTGCCCGCGTCAGCATCCCG 
AACCCGGAGGGGCGCTGGCGTCCCGGTATGACCGTGGCCGCCGAGGTCACAGTAGGCACGCGCAACGTATCG 
CTTGCGGTGAAGGAGTCGGGATTGCAGCGATTCCGCGACTTCACCGTGGTATTCGCACAGGTCGGCGAAACC 
TACGAAGTGCGAATGCTTGAGCTTGGGGAGCGGGATGGCGAATACGTTGAAGTGACCGGCGGACTCAAGCCC 
GGCACGAACTACGTGGCCGAGCAAAGTTTCCTGATACGCCAAGACATCGAAAAGTCTGGCGCCAGCCACGAT 
CACTGA