ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6086

TrivialName: PA14_31040

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_31040

PAO1 Ortholog Locus:

Sequence Length: 1248

Protein Length: 415

Start: 2699525

Stop: 2698278

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAM38997.1| (AE012066) cation efflux system protein [Xanthomonas axonopodis pv. citri str. 306] Identities = 146/407 (35%), Positives = 212/407 (52%), Gaps = 3/407 (0%)

Sequence:

ATGAAATTGATCCGCTTAGTGGCCTTGGTGTTCGTCGGGGCCTGCGGCACATCCGCAGCCCTAGCCGCCGAA
CCCCTGCGGCTGGAGGAGGCAGTCTCCCGCGCGCTCGCTGCCCATCCCTCCATCACAGCCGAAACGGCGCAG
CTCCAGGCTGTTCGTGCCCGCACCCAGCGCGAAGCCCTGCCACCGCCTTACACGATTGGCGGTGAGATGGAA
AACGTCGCCGGGAACGGCAATCTGCGGGGTATTCGTTCGGCTGAAACGACATTGCGCATCGGCCGAGTTATC
GAACTCGGCGGCAAGCGCGAGGCTCGTCAAACATTAGGGCAAGCCGAACTGAGGGAACAAGAGCATCAGGCC
ACCAAAGCGCGGATCGACTTGGCCAGCACGACCGCGGCTCGATTCATTGAAGTGCTCGCTAGGCAACAGCGA
TTGGCCTATGCCGAGGAGCGCGTTGAGCAGGCAGAACGCACCCGACAGGAGGTTGCAGCCTGGGTGAAAGCC
GCTCGCAATCCCGATTCTGATTTGCAGGCCGCCAATATTGCAGTCGCAGAGGCGCAGCTTAACCGCGAGAGT
GCAGAACACGAATTGGCAAGCGCCAAGATGACCTTGGCAGCGAGTTGGGGCGCGTTGACGCCGGACTTCGGT
GAAGTCGTCGGCGACCTGCAAACCTTGCCGACCGTAGCGCCATTCGAGACGTTGGCCGCTCGTTTGCCCATG
ACCCCCGAGCTATGGGCGTCGCGCTTGCGAGCCGACACCATCGGCGCCCGTCGCCGGCTCGCGGAGGCCGAG
GCCAAACCCAATCTGGACGTTAGCTTGGGTGTACGTCGTTTTGAGGCCACCAGGGATCACGCCGTGGTGGCG
TCAATCTCGATCCCGCTTGGTGGGCCGACACGCTCTGGATACGCGGTGTCCCAGGCCAACGCCGAACTGGCT
GCGCTGGAGGCACGGCGCGATGCCGAACGCTTCGAGCGCCACCAGGCACTGTTCGACAAGTATCAGGAACTC
ACGCACGCACGTCACGAACTGGGGTCGTTGCGCGAACGGATGCTGCCTATGGCCGAAAGTGCCTTGGCAACG
ACTCGTCGTGGCTTTGAGCAAGGCCGCTTCTCCTATTTGTCGCTGGCCCAAGCACAGCGAACGCTTTTCGAT
CTTCGCTCGCGTGCTGTCGAAGCCGCCGCTCGCTATCACCTTCTGCTGGTCGAGGTGGAACGCCTCACCGCC
ACCGTTGAGGAAAACGCACCATGA

Translation:

MKLIRLVALVFVGACGTSAALAAEPLRLEEAVSRALAAHPSITAETAQLQAVRARTQREALPPPYTIGGEME
NVAGNGNLRGIRSAETTLRIGRVIELGGKREARQTLGQAELREQEHQATKARIDLASTTAARFIEVLARQQR
LAYAEERVEQAERTRQEVAAWVKAARNPDSDLQAANIAVAEAQLNRESAEHELASAKMTLAASWGALTPDFG
EVVGDLQTLPTVAPFETLAARLPMTPELWASRLRADTIGARRRLAEAEAKPNLDVSLGVRRFEATRDHAVVA
SISIPLGGPTRSGYAVSQANAELAALEARRDAERFERHQALFDKYQELTHARHELGSLRERMLPMAESALAT
TRRGFEQGRFSYLSLAQAQRTLFDLRSRAVEAAARYHLLLVEVERLTATVEENAP*

AnnotationID:6087 GeneID:6086

AnnotatorUID: danlee

Modification Date/Time: 2005-09-30 15:03:11

Gene Name:

Confidence Code: 3

GeneProduct: putative cation efflux system protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (19) Protein secretion/export apparatus

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1538, pfam02321

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|21244879|ref|NP_644461.1|  cation efflux system protein [Xanthomonas axonopodis pv. citri str. 306]
     Length=423
     Score =  233 bits (594),  Expect = 9e-60
     Identities = 146/407 (35%), Positives = 212/407 (52%), Gaps = 3/407 (0%)

gi|21233460|ref|NP_639377.1|  cation efflux system protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66770424|ref|YP_245186.1|  cation efflux system protein [Xanthomonas campestris pv. campestris str. 8004]
gi|66575756|gb|AAY51166.1|  cation efflux system protein [Xanthomonas campestris pv. campestris str. 8004]
gi|21115306|gb|AAM43259.1|  cation efflux system protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
     Length=421
     Score =  221 bits (563),  Expect = 4e-56
     Identities = 138/407 (33%), Positives = 209/407 (51%), Gaps = 3/407 (0%)

Structural Features:

COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, 
outer membrane / Intracellular trafficking and secretion].
             CD-Length = 457 residues,  86.7% aligned
             Score = 76.3 bits (187), Expect = 6e-15

pfam02321, OEP, Outer membrane efflux protein. 
             CD-Length = 188 residues,  97.9% aligned
             Score = 41.2 bits (96), Expect = 2e-04

Genomic Context:

Comment:

protein expressed

ReferenceID:12052

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29292