ViewGene
Locus Name:
GeneID:
Location:

GeneID:6084
TrivialName: PA14_31070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31070
PAO1 Ortholog Locus:
Sequence Length:2361
Protein Length:786
Start: 2703530
Stop: 2701170
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD16308.1| (AL646070) HYPOTHETICAL/UNKNOWN PROTEIN [Ralstonia solanacearum]
Identities = 604/682 (88%), Positives = 643/682 (94%), Gaps = 4/682 (0%)
Sequence:
ATGTCGTCGCGCGTGCAGTGCGAGCGCCGATCCTACGTATCGGGTGCCGCACTTCGCGCTGCCTTCCCATGT
GCAGGCGTCTTGCCTCGAACGCTGCCGGCCTATGGCCGTCGCCGCGTTCGCCGGCGCGCTGGCTGCTCGCGC
AGCAGCGCCGCCGGGCCGCCGCTGCCCGGAGCGCCAGCGAGGGGCAAAGGCGGAAGGCAAGACAAAAGGACG
CGGCACCGGGCCGCGTCGAAAGCCAGTCTGCACGTGGGGTTGGCGCGGCACGGCGCGGCTTTGCCGCCGTGC
CGCGTGGGGCGCGAGGCCCGCGCCAATGCAGGCATGTCCGCGTGCTTCGCACGACAGGACACGCCAGAGCTT
GCAGGGAGCGCAGCCATGAGCGACCGCCGCGACGACGATTTCCGCGTGCGCCCCAGCGCCCCGAAGAACCGG
GGCAAGGGCCAGGGACAGAGCTTCGTTTCCAAGGTGCTCAAGCAGACGGGCAAGGCCAGCGGCGGCAAGTCC
ACGGTGCGCCGTTCTGGCGCAGCGCGTGGCACCGGCCAGCGTCCCGGCTCGCGCCTGGGCCGCGGCCATACG
GCGGCGCGCTTCGCGGGCGCGAAGCTGACACCCATGTCGCGGCGCGTGACCATCAAGACGCTGCTGGTCAAC
CAGCGCCAGGCCAGCCCGCAATCGCTCGCCAAGCACCTTCGCTATATCGAACGTGATGGCGTGGGGCGCGAC
GGCGAGCCGGGCCAAGCCTACGGGCCGCAGACCGACGCCGCCGACCTCGACGCCTTCAAGGAACGCTGCGCC
GACGACCGGCACCATTTCCGCTTCATCCTCTCGCCCGAGGATGGCGCGGAACTGGAAGACCTGCGCACCTAT
ACGCGGCACCTCATGGGCCGCATGGAAGCCGACCTGGGCACAGGCCTCGATTGGGTGGCCGTGAACCACTGG
AACACCGACAACCCGCACATGCACATCGTCGTGCGCGGGCGCGACGACACCGGCAAAGACCTCATCATCGCG
GGCGACTACATCGCCGATGGTTTCCGCCACCGCGCCGCCGAGCTGGCGACCGAATGGCTGGGGCCGCGCACC
GAACTGGAGATCCAGCAGACTTTGCAGCGCGAGGTGGAACAGGAACGGTGGACGAGCCTGGATCGCACCTTG
AAGCGCGAGGCCGGCGACCATGGCCTGGTGCATGTCGAACGGCTCAACGAACCCCGCTTGCAGCGCCAACGC
CTGCTGCTGATCGGCCGCCTGCAACGCTTGCAGCGCCTGGGCCTGGCCGACGAGACGCAGCCCGGCACCTGG
GCCGTCCATGCCGATGCGGAAAAGACCTTGCGCGCCCTGGGCGAGCGCGGCGACATCATCCGCACGATGCAG
CGGGCCATGCGCGGCGAGCCGCGCGAGCTGGCGGTGTTCGAGCCTGGAGACGATGGCCGAACCATCCTCGGG
CGCGTGGCCGCGAAGGGACTGGCCGACGAGCTGCGCGACCGGGGCTATCTGGTCATCGACGGCGTGGACGGC
AAGGCCCACTACGTCGCGCTCAACGCCCGCGACGAGCTGGCGAACTATCCGACCGGGGCCGTGGTGGAGGTG
AAGGGATCGGCCGACGTGCGCGCGGCCGACAGGAACATCGCCGCGCTGGCGAGCGATGGCCTGTACCGCACC
GACCATCACCTCGCCATCGCGCAGGGCCAGGTCGTCCCCGGACGCGACCCGCAGGAGGTTGTGGCGGCCCAT
ATCCGCAGGCTGGAAGCCCTACGCCGGGCGGGCATCGTGGAGCGCGTGGCCGAGGGGCTATGGAAGGTGCCG
GGCGATCTGCCCGAGCAGGGCCGCCGCTACGACGCGCAGCGCATGGGCGGTGTGGCCGTGGAGCTGAAATCT
CACCTGCCCATCGAGCGGCAGGCCCGCGTAATCGGGGCCACCTGGCTAGATCAGCAGTTGATCGGTGGCGGC
TCGGGCCTGGGCGACCTGGGTTTCGGTAGCGAGGCCAGGCAGGCGATGCAGCAGCGCGCCGACTTCCTGGCC
GAACAGGGGCTGGCCGAGCGGCGCGGGCAGCGTGTGATCCTGGCGCGCAACCTGCTGGGCACGCTGCGCAAC
CGGGAACTGGCACAGGCCGCCAAAGACATTGCCGCCGATACCGGCCTGGAGCATCGCCCGGTGGCCGACGGG
CAGCGCGTGTCCGGCATCTACCGGCGCTCCGTCATGCTCGCCAGCGGGCGCTACGCGATGCTCGATGACGGC
ATGGGCTTCTCGCTGGTGCCGTGGAAGCCGGTGATCGAGCAGCGGCTGGGGCAGCAGCTTGCGGCAACCGTG
CGCGGTGGCGGGGTGTCCTGGGAGATTGGGCGGCAACGCGGGCCTACTGTCGCTTGA
Translation:
MSSRVQCERRSYVSGAALRAAFPCAGVLPRTLPAYGRRRVRRRAGCSRSSAAGPPLPGAPARGKGGRQDKRT
RHRAASKASLHVGLARHGAALPPCRVGREARANAGMSACFARQDTPELAGSAAMSDRRDDDFRVRPSAPKNR
GKGQGQSFVSKVLKQTGKASGGKSTVRRSGAARGTGQRPGSRLGRGHTAARFAGAKLTPMSRRVTIKTLLVN
QRQASPQSLAKHLRYIERDGVGRDGEPGQAYGPQTDAADLDAFKERCADDRHHFRFILSPEDGAELEDLRTY
TRHLMGRMEADLGTGLDWVAVNHWNTDNPHMHIVVRGRDDTGKDLIIAGDYIADGFRHRAAELATEWLGPRT
ELEIQQTLQREVEQERWTSLDRTLKREAGDHGLVHVERLNEPRLQRQRLLLIGRLQRLQRLGLADETQPGTW
AVHADAEKTLRALGERGDIIRTMQRAMRGEPRELAVFEPGDDGRTILGRVAAKGLADELRDRGYLVIDGVDG
KAHYVALNARDELANYPTGAVVEVKGSADVRAADRNIAALASDGLYRTDHHLAIAQGQVVPGRDPQEVVAAH
IRRLEALRRAGIVERVAEGLWKVPGDLPEQGRRYDAQRMGGVAVELKSHLPIERQARVIGATWLDQQLIGGG
SGLGDLGFGSEARQAMQQRADFLAEQGLAERRGQRVILARNLLGTLRNRELAQAAKDIAADTGLEHRPVADG
QRVSGIYRRSVMLASGRYAMLDDGMGFSLVPWKPVIEQRLGQQLAATVRGGGVSWEIGRQRGPTVA*
AnnotationID:6085GeneID:6084
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 16:04:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3843
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68526162|gb|EAN49136.1|  conserved hypothetical/unknown protein [Ralstonia metallidurans CH34]
     Length=700
     Score = 1283 bits (3319),  Expect = 0.0
     Identities = 641/702 (91%), Positives = 667/702 (95%), Gaps = 7/702 (0%)

gi|17547320|ref|NP_520722.1|  HYPOTHETICAL/UNKNOWN PROTEIN [Ralstonia solanacearum GMI1000]
     Length=683
     Score = 1221 bits (3159),  Expect = 0.0
     Identities = 604/682 (88%), Positives = 643/682 (94%), Gaps = 4/682 (0%)

gi|67088835|gb|EAM08301.1|  conserved hypothetical/unknown protein [Azotobacter vinelandii AvOP]
     Length=661
     Score = 1192 bits (3083),  Expect = 0.0
     Identities = 588/660 (89%), Positives = 623/660 (94%), Gaps = 0/660 (0%)

gi|72607449|gb|EAO43409.1|  conserved hypothetical/unknown protein [Burkholderia ambifaria  AMMD]
     Length=667
     Score = 1165 bits (3015),  Expect = 0.0
     Identities = 582/667 (87%), Positives = 617/667 (92%), Gaps = 7/667 (1%)








 
Structural Features:
COG3843, VirD2, Type IV secretory pathway, VirD2 components (relaxase) [Intracellular 
trafficking and secretion].
             CD-Length = 326 residues,  98.2% aligned
             Score =  253 bits (647), Expect = 6e-68






   
Genomic Context:






   
Comment:
putative Type IV secretion pathway component


















    ReferenceID:12048




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29288




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6084
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198359
                           emb|CAD16308.1|
                           (AL646070) HYPOTHETICAL/UNKNOWN PROTEIN [Ralstonia solanacearum]
                           790
                           76.45
                           81.39
                           111
                           3162.0
     

     
     
198360
                           emb|CAD61135.1|
                           (AJ536756) hypothetical protein [Ralstonia oxalatica]
                           818
                           50.24
                           51.58
                           333
                           2016.0
     

     
     
198362
                           emb|CAD31511.1|
                           (AL672112) HYPOTHETICAL PROTEIN [Mesorhizobium loti]
                           816
                           34.92
                           49.14
                           190
                           1258.0
     

     
     
198364
                           emb|CAE27677.1|
                           (BX572600) conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
                           812
                           34.60
                           47.04
                           254
                           1254.0
     

     
     
198361
                           dbj|BAB52523.1|
                           (AP003008) unknown protein [Mesorhizobium loti]
                           812
                           34.60
                           49.13
                           182
                           1253.0
     

     






      

          
GC ORFID: 49086How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2250396Stop: 2252756

          
Length: 2361


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTCGTCGCGCGTGCAGTGCGAGCGCCGATCCTACGTATCGGGTGCCGCACTTCGCGCTGCCTTCCCATGT 
GCAGGCGTCTTGCCTCGAACGCTGCCGGCCTATGGCCGTCGCCGCGTTCGCCGGCGCGCTGGCTGCTCGCGC 
AGCAGCGCCGCCGGGCCGCCGCTGCCCGGAGCGCCAGCGAGGGGCAAAGGCGGAAGGCAAGACAAAAGGACG 
CGGCACCGGGCCGCGTCGAAAGCCAGTCTGCACGTGGGGTTGGCGCGGCACGGCGCGGCTTTGCCGCCGTGC 
CGCGTGGGGCGCGAGGCCCGCGCCAATGCAGGCATGTCCGCGTGCTTCGCACGACAGGACACGCCAGAGCTT 
GCAGGGAGCGCAGCCATGAGCGACCGCCGCGACGACGATTTCCGCGTGCGCCCCAGCGCCCCGAAGAACCGG 
GGCAAGGGCCAGGGACAGAGCTTCGTTTCCAAGGTGCTCAAGCAGACGGGCAAGGCCAGCGGCGGCAAGTCC 
ACGGTGCGCCGTTCTGGCGCAGCGCGTGGCACCGGCCAGCGTCCCGGCTCGCGCCTGGGCCGCGGCCATACG 
GCGGCGCGCTTCGCGGGCGCGAAGCTGACACCCATGTCGCGGCGCGTGACCATCAAGACGCTGCTGGTCAAC 
CAGCGCCAGGCCAGCCCGCAATCGCTCGCCAAGCACCTTCGCTATATCGAACGTGATGGCGTGGGGCGCGAC 
GGCGAGCCGGGCCAAGCCTACGGGCCGCAGACCGACGCCGCCGACCTCGACGCCTTCAAGGAACGCTGCGCC 
GACGACCGGCACCATTTCCGCTTCATCCTCTCGCCCGAGGATGGCGCGGAACTGGAAGACCTGCGCACCTAT 
ACGCGGCACCTCATGGGCCGCATGGAAGCCGACCTGGGCACAGGCCTCGATTGGGTGGCCGTGAACCACTGG 
AACACCGACAACCCGCACATGCACATCGTCGTGCGCGGGCGCGACGACACCGGCAAAGACCTCATCATCGCG 
GGCGACTACATCGCCGATGGTTTCCGCCACCGCGCCGCCGAGCTGGCGACCGAATGGCTGGGGCCGCGCACC 
GAACTGGAGATCCAGCAGACTTTGCAGCGCGAGGTGGAACAGGAACGGTGGACGAGCCTGGATCGCACCTTG 
AAGCGCGAGGCCGGCGACCATGGCCTGGTGCATGTCGAACGGCTCAACGAACCCCGCTTGCAGCGCCAACGC 
CTGCTGCTGATCGGCCGCCTGCAACGCTTGCAGCGCCTGGGCCTGGCCGACGAGACGCAGCCCGGCACCTGG 
GCCGTCCATGCCGATGCGGAAAAGACCTTGCGCGCCCTGGGCGAGCGCGGCGACATCATCCGCACGATGCAG 
CGGGCCATGCGCGGCGAGCCGCGCGAGCTGGCGGTGTTCGAGCCTGGAGACGATGGCCGAACCATCCTCGGG 
CGCGTGGCCGCGAAGGGACTGGCCGACGAGCTGCGCGACCGGGGCTATCTGGTCATCGACGGCGTGGACGGC 
AAGGCCCACTACGTCGCGCTCAACGCCCGCGACGAGCTGGCGAACTATCCGACCGGGGCCGTGGTGGAGGTG 
AAGGGATCGGCCGACGTGCGCGCGGCCGACAGGAACATCGCCGCGCTGGCGAGCGATGGCCTGTACCGCACC 
GACCATCACCTCGCCATCGCGCAGGGCCAGGTCGTCCCCGGACGCGACCCGCAGGAGGTTGTGGCGGCCCAT 
ATCCGCAGGCTGGAAGCCCTACGCCGGGCGGGCATCGTGGAGCGCGTGGCCGAGGGGCTATGGAAGGTGCCG 
GGCGATCTGCCCGAGCAGGGCCGCCGCTACGACGCGCAGCGCATGGGCGGTGTGGCCGTGGAGCTGAAATCT 
CACCTGCCCATCGAGCGGCAGGCCCGCGTAATCGGGGCCACCTGGCTAGATCAGCAGTTGATCGGTGGCGGC 
TCGGGCCTGGGCGACCTGGGTTTCGGTAGCGAGGCCAGGCAGGCGATGCAGCAGCGCGCCGACTTCCTGGCC 
GAACAGGGGCTGGCCGAGCGGCGCGGGCAGCGTGTGATCCTGGCGCGCAACCTGCTGGGCACGCTGCGCAAC 
CGGGAACTGGCACAGGCCGCCAAAGACATTGCCGCCGATACCGGCCTGGAGCATCGCCCGGTGGCCGACGGG 
CAGCGCGTGTCCGGCATCTACCGGCGCTCCGTCATGCTCGCCAGCGGGCGCTACGCGATGCTCGATGACGGC 
ATGGGCTTCTCGCTGGTGCCGTGGAAGCCGGTGATCGAGCAGCGGCTGGGGCAGCAGCTTGCGGCAACCGTG 
CGCGGTGGCGGGGTGTCCTGGGAGATTGGGCGGCAACGCGGGCCTACTGTCGCTTGA